Wall clock time and date at job start Fri Apr 10 2020 20:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33811 * 124.52244 * 2 1 4 4 C 1.37483 * 115.10101 * 179.85143 * 3 2 1 5 5 C 1.36652 * 113.29264 * 0.42264 * 4 3 2 6 6 C 1.46576 * 125.45397 * 179.79294 * 5 4 3 7 7 O 1.21699 * 120.00326 * 6.26307 * 6 5 4 8 8 N 1.34785 * 119.99780 * 186.26298 * 6 5 4 9 9 C 1.47417 * 125.64720 * 5.24368 * 8 6 5 10 10 C 1.55129 * 104.72248 * 155.81985 * 9 8 6 11 11 C 1.55157 * 101.48299 * 37.29696 * 10 9 8 12 12 H 1.09001 * 110.72239 * 82.69745 * 11 10 9 13 13 N 1.46508 * 110.71855 * 205.96959 * 11 10 9 14 14 C 1.36940 * 119.99568 * 268.52007 * 13 11 10 15 15 H 1.07989 * 120.00485 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99085 * 179.97438 * 14 13 11 17 17 N 1.31629 * 119.99613 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00700 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47143 * 90.00003 * 18 16 14 20 20 H 1.48495 * 109.47355 * 210.00011 * 18 16 14 21 21 H 1.48506 * 109.46909 * 330.00158 * 18 16 14 22 22 C 1.47022 * 125.64844 * 185.56069 * 8 6 5 23 23 H 1.08999 * 109.88555 * 61.43920 * 22 8 6 24 24 C 1.53009 * 109.87897 * 300.43598 * 22 8 6 25 25 S 1.70617 * 124.52045 * 180.29687 * 2 1 3 26 26 H 1.08993 * 109.47324 * 179.72303 * 1 2 3 27 27 H 1.09007 * 109.46822 * 59.72055 * 1 2 3 28 28 H 1.08999 * 109.47243 * 299.72633 * 1 2 3 29 29 H 1.08001 * 122.45255 * 0.02562 * 3 2 1 30 30 H 1.07998 * 123.35204 * 180.17817 * 4 3 2 31 31 H 1.09001 * 110.37330 * 274.75026 * 9 8 6 32 32 H 1.08999 * 110.36874 * 37.07089 * 9 8 6 33 33 H 1.09001 * 111.19586 * 279.19637 * 10 9 8 34 34 H 1.09003 * 110.90825 * 155.27470 * 10 9 8 35 35 H 0.96996 * 119.99604 * 88.52839 * 13 11 10 36 36 H 0.96995 * 120.00097 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47249 * 61.45361 * 24 22 8 38 38 H 1.08995 * 109.46798 * 181.45273 * 24 22 8 39 39 H 1.08999 * 109.46865 * 301.45300 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6216 0.8774 0.0032 5 6 3.9493 -0.4492 -0.0034 6 6 5.3123 -0.9884 -0.0063 7 8 6.2635 -0.2386 0.1123 8 7 5.5121 -2.3146 -0.1402 9 6 4.4650 -3.3192 -0.4001 10 6 5.2119 -4.5031 -1.0688 11 6 6.5536 -4.5016 -0.2896 12 1 6.4512 -5.0344 0.6557 13 7 7.6250 -5.0843 -1.1013 14 6 7.8930 -6.4249 -1.0208 15 1 7.3144 -7.0525 -0.3594 16 6 8.9078 -6.9770 -1.7903 17 7 9.1651 -8.2656 -1.7134 18 14 9.9082 -5.8916 -2.9350 19 1 11.0882 -5.3597 -2.2071 20 1 10.3645 -6.6899 -4.1010 21 1 9.0673 -4.7622 -3.4068 22 6 6.8095 -2.9996 -0.0448 23 1 7.2354 -2.8505 0.9474 24 6 7.7651 -2.4544 -1.1082 25 16 2.4739 -1.4057 -0.0073 26 1 -0.3633 -1.0276 -0.0050 27 1 -0.3633 0.5182 -0.8875 28 1 -0.3634 0.5096 0.8924 29 1 1.8429 2.0964 0.0004 30 1 4.3550 1.6702 0.0064 31 1 4.0045 -3.6379 0.5351 32 1 3.7117 -2.9158 -1.0766 33 1 5.3762 -4.3163 -2.1300 34 1 4.6730 -5.4384 -0.9171 35 1 8.1445 -4.5206 -1.6956 36 1 9.8745 -8.6515 -2.2508 37 1 7.9307 -1.3908 -0.9369 38 1 8.7156 -2.9844 -1.0484 39 1 7.3296 -2.5997 -2.0968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985891100.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:12 Heat of formation + Delta-G solvation = 21.410152 kcal Electronic energy + Delta-G solvation = -21428.432816 eV Core-core repulsion = 18270.387656 eV Total energy + Delta-G solvation = -3158.045160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.17295 -38.37607 -37.21225 -34.40686 -32.45943 -31.67159 -30.87868 -29.63040 -27.23384 -25.57446 -24.03830 -23.15455 -22.66069 -21.03230 -19.17919 -18.52383 -18.12459 -17.68876 -16.10605 -15.88076 -15.79817 -14.83645 -14.68376 -14.25112 -14.09831 -13.83271 -13.46847 -13.33112 -12.98104 -12.73184 -12.56565 -12.41269 -12.28580 -12.15361 -11.89972 -11.82462 -11.47228 -11.24848 -11.02051 -10.74767 -10.57747 -10.36660 -10.11147 -9.84376 -9.59050 -9.02868 -8.89600 -8.73152 -8.47366 -7.37188 -5.84573 -3.21665 0.37161 1.31460 1.73626 2.23984 2.97362 3.21800 3.33368 3.36469 3.42063 4.46092 4.52667 4.54294 4.82668 4.87943 5.09708 5.10374 5.13726 5.14911 5.32830 5.35693 5.43953 5.50930 5.56966 5.61649 5.77821 5.79504 5.86679 5.98091 5.99170 6.13174 6.19429 6.35487 6.43614 6.53608 6.56157 6.79801 7.56743 7.90242 8.17426 8.34247 9.11301 9.83577 10.02205 11.33229 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.031877 B = 0.003801 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.156833 B = 7364.767587 C = 7923.190672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.218 4.218 3 C -0.159 4.159 4 C -0.056 4.056 5 C -0.263 4.263 6 C 0.602 3.398 7 O -0.533 6.533 8 N -0.606 5.606 9 C 0.085 3.915 10 C -0.148 4.148 11 C 0.180 3.820 12 H 0.077 0.923 13 N -0.739 5.739 14 C -0.250 4.250 15 H 0.093 0.907 16 C 0.010 3.990 17 N -0.930 5.930 18 Si 0.878 3.122 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.276 1.276 22 C 0.127 3.873 23 H 0.078 0.922 24 C -0.164 4.164 25 S 0.223 5.777 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.368 0.632 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 16.240 3.438 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.337 4.337 3 C -0.189 4.189 4 C -0.089 4.089 5 C -0.383 4.383 6 C 0.390 3.610 7 O -0.412 6.412 8 N -0.340 5.340 9 C -0.040 4.040 10 C -0.189 4.189 11 C 0.068 3.932 12 H 0.095 0.905 13 N -0.383 5.383 14 C -0.380 4.380 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.577 5.577 18 Si 0.708 3.292 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.202 1.202 22 C 0.024 3.976 23 H 0.096 0.904 24 C -0.222 4.222 25 S 0.491 5.509 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.157 0.843 30 H 0.168 0.832 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.204 0.796 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.664 14.892 3.555 23.376 hybrid contribution 0.902 2.275 -0.932 2.619 sum -16.762 17.167 2.623 24.136 Atomic orbital electron populations 1.20357 0.87700 1.03033 1.03117 1.24639 1.01834 0.99557 1.07707 1.19884 0.92602 0.99516 1.06912 1.20702 0.96138 0.95122 0.96929 1.24585 0.96834 0.97991 1.18913 1.16565 0.86747 0.80709 0.76965 1.90800 1.42006 1.57268 1.51101 1.48412 1.10015 1.05239 1.70300 1.22618 0.90807 0.90131 1.00433 1.23559 0.98481 0.95998 1.00863 1.21156 0.87893 0.89259 0.94869 0.90458 1.42964 1.38688 1.07336 1.49352 1.19067 1.14524 0.82878 1.21501 0.88958 1.24649 0.98789 0.95554 0.99661 1.69692 1.33866 1.10153 1.43977 0.86667 0.80941 0.80231 0.81406 1.20796 1.21526 1.20222 1.21929 0.82669 0.93320 0.99697 0.90384 1.22085 0.99616 1.01953 0.98547 1.83461 0.93649 1.06227 1.67563 0.91332 0.90474 0.90453 0.84282 0.83173 0.90735 0.90756 0.90548 0.89734 0.79551 0.92911 0.91292 0.90971 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.33 36.01 0.37 -0.13 16 2 C -0.22 -1.97 6.28 -35.86 -0.23 -2.20 16 3 C -0.16 -1.52 10.00 -41.41 -0.41 -1.94 16 4 C -0.06 -0.65 10.02 -40.43 -0.41 -1.06 16 5 C -0.26 -3.46 6.34 -36.79 -0.23 -3.69 16 6 C 0.60 9.68 7.62 -12.89 -0.10 9.58 16 7 O -0.53 -10.08 15.57 5.19 0.08 -10.00 16 8 N -0.61 -9.30 3.08 -164.45 -0.51 -9.81 16 9 C 0.08 1.09 5.29 -2.41 -0.01 1.07 16 10 C -0.15 -2.27 6.78 -24.46 -0.17 -2.44 16 11 C 0.18 3.26 3.48 -66.10 -0.23 3.03 16 12 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 13 N -0.74 -16.65 4.74 -51.65 -0.25 -16.90 16 14 C -0.25 -6.73 10.44 -15.06 -0.16 -6.89 16 15 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 16 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 17 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 18 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 22 C 0.13 2.16 3.51 -66.95 -0.24 1.92 16 23 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 24 C -0.16 -2.91 7.92 37.16 0.29 -2.61 16 25 S 0.22 2.23 18.60 -107.50 -2.00 0.23 16 26 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16 32 H 0.07 0.85 5.74 -38.64 -0.22 0.63 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.37 8.28 2.92 -40.82 -0.12 8.16 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 37 H 0.07 1.24 6.58 -51.93 -0.34 0.89 16 38 H 0.07 1.32 6.82 -51.93 -0.35 0.97 16 39 H 0.06 1.00 8.01 -51.93 -0.42 0.59 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -31.88 325.35 -8.57 -40.45 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.26 Total: 7.02 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.61 Total: -5.16 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.02 Total: -54.38 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.00 Total: 0.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.88 -8.57 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985891100.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.863 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds