Wall clock time and date at job start Fri Apr 10 2020 20:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33817 * 124.52473 * 2 1 4 4 C 1.37468 * 115.10253 * 180.02562 * 3 2 1 5 5 C 1.36644 * 113.29972 * 0.22822 * 4 3 2 6 6 C 1.46584 * 125.46260 * 179.76961 * 5 4 3 7 7 O 1.21701 * 119.99664 * 353.40257 * 6 5 4 8 8 N 1.34780 * 119.99978 * 173.39917 * 6 5 4 9 9 C 1.47423 * 125.64978 * 3.58512 * 8 6 5 10 10 C 1.54908 * 104.83149 * 204.09390 * 9 8 6 11 11 C 1.55158 * 101.58336 * 322.99179 * 10 9 8 12 12 H 1.09002 * 110.72140 * 277.14052 * 11 10 9 13 13 N 1.46498 * 110.71941 * 153.86600 * 11 10 9 14 14 C 1.36932 * 120.00034 * 86.45372 * 13 11 10 15 15 H 1.08002 * 120.00262 * 0.02562 * 14 13 11 16 16 C 1.38810 * 119.99931 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00103 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00083 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47276 * 90.00051 * 18 16 14 20 20 H 1.48501 * 109.47371 * 210.00701 * 18 16 14 21 21 H 1.48510 * 109.46949 * 330.00479 * 18 16 14 22 22 C 1.47020 * 125.64279 * 183.28510 * 8 6 5 23 23 H 1.08998 * 109.88100 * 298.38719 * 22 8 6 24 24 C 1.53001 * 109.88791 * 59.55747 * 22 8 6 25 25 S 1.70612 * 124.52266 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47399 * 90.00147 * 1 2 3 27 27 H 1.08996 * 109.47258 * 210.00310 * 1 2 3 28 28 H 1.09001 * 109.47100 * 329.99768 * 1 2 3 29 29 H 1.08000 * 122.44585 * 0.04002 * 3 2 1 30 30 H 1.08000 * 123.35258 * 179.97438 * 4 3 2 31 31 H 1.08996 * 110.36682 * 322.93630 * 9 8 6 32 32 H 1.09001 * 110.35933 * 85.25316 * 9 8 6 33 33 H 1.08996 * 111.00544 * 81.07116 * 10 9 8 34 34 H 1.09007 * 111.00349 * 204.88276 * 10 9 8 35 35 H 0.97000 * 119.99585 * 266.45238 * 13 11 10 36 36 H 0.97004 * 119.99712 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.47018 * 58.54718 * 24 22 8 38 38 H 1.09003 * 109.46987 * 178.54334 * 24 22 8 39 39 H 1.08995 * 109.46979 * 298.54749 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 3.9493 -0.4491 -0.0060 6 6 5.3123 -0.9883 -0.0127 7 8 6.2628 -0.2382 -0.1348 8 7 5.5129 -2.3148 0.1165 9 6 4.4563 -3.3398 0.1969 10 6 5.1154 -4.5317 0.9348 11 6 6.5583 -4.4909 0.3659 12 1 6.6077 -4.9991 -0.5971 13 7 7.5062 -5.0811 1.3143 14 6 7.7289 -6.4322 1.3086 15 1 7.2060 -7.0627 0.6046 16 6 8.6274 -6.9913 2.2068 17 7 9.2650 -6.2228 3.0644 18 14 8.9318 -8.8343 2.1986 19 1 10.0474 -9.1477 1.2700 20 1 9.2870 -9.2836 3.5687 21 1 7.7026 -9.5370 1.7504 22 6 6.8218 -2.9798 0.1944 23 1 7.3834 -2.8013 -0.7226 24 6 7.6036 -2.4506 1.3983 25 16 2.4739 -1.4057 -0.0006 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.8429 2.0964 0.0006 30 1 4.3550 1.6702 -0.0010 31 1 3.6061 -2.9643 0.7663 32 1 4.1418 -3.6394 -0.8029 33 1 5.1157 -4.3718 2.0129 34 1 4.6212 -5.4697 0.6812 35 1 7.9761 -4.5147 1.9462 36 1 9.8927 -6.6137 3.6923 37 1 7.0318 -2.6278 2.3092 38 1 8.5616 -2.9664 1.4646 39 1 7.7744 -1.3808 1.2788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985891105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:16 Heat of formation + Delta-G solvation = 18.057509 kcal Electronic energy + Delta-G solvation = -21364.349099 eV Core-core repulsion = 18206.158557 eV Total energy + Delta-G solvation = -3158.190541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06874 -38.29205 -37.10690 -34.25464 -32.40161 -31.54539 -30.78222 -29.14720 -27.13302 -25.32377 -24.00492 -23.39586 -22.64121 -21.00060 -19.01889 -18.46016 -17.93597 -17.38048 -16.03792 -15.75671 -15.66273 -14.71840 -14.69994 -14.26249 -13.99594 -13.71941 -13.44080 -13.24122 -13.00257 -12.61733 -12.49532 -12.26075 -12.14990 -12.06762 -11.81174 -11.68273 -11.29325 -11.01530 -10.89836 -10.57586 -10.50634 -10.23765 -10.01112 -9.82517 -9.63380 -8.98556 -8.82577 -8.68424 -8.37891 -7.05480 -5.83820 -3.14011 0.43893 1.37451 1.80471 2.31143 3.06093 3.30363 3.40041 3.45353 3.47037 4.51817 4.54167 4.61153 4.91492 4.94244 5.17127 5.19356 5.20240 5.29940 5.40923 5.48197 5.50949 5.60043 5.62311 5.75567 5.85854 5.97520 6.04840 6.08363 6.18717 6.25821 6.27701 6.50535 6.52922 6.67571 6.80124 6.95312 7.64218 7.65894 8.25804 8.34580 9.46262 10.00623 10.35751 11.38551 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.031440 B = 0.003592 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.364903 B = 7793.281606 C = 8422.636929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.224 4.224 3 C -0.157 4.157 4 C -0.057 4.057 5 C -0.260 4.260 6 C 0.601 3.399 7 O -0.533 6.533 8 N -0.605 5.605 9 C 0.089 3.911 10 C -0.148 4.148 11 C 0.174 3.826 12 H 0.065 0.935 13 N -0.716 5.716 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.130 3.870 23 H 0.075 0.925 24 C -0.159 4.159 25 S 0.221 5.779 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.392 0.608 36 H 0.257 0.743 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.618 11.289 -6.523 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.343 4.343 3 C -0.187 4.187 4 C -0.090 4.090 5 C -0.380 4.380 6 C 0.389 3.611 7 O -0.412 6.412 8 N -0.338 5.338 9 C -0.036 4.036 10 C -0.190 4.190 11 C 0.062 3.938 12 H 0.083 0.917 13 N -0.360 5.360 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.027 3.973 23 H 0.093 0.907 24 C -0.217 4.217 25 S 0.489 5.511 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.156 0.844 30 H 0.168 0.832 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.230 0.770 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.407 10.033 -6.597 21.147 hybrid contribution 0.438 0.802 0.310 0.965 sum -16.969 10.835 -6.287 21.092 Atomic orbital electron populations 1.20355 0.87807 1.03242 1.02814 1.24752 1.01888 1.00015 1.07597 1.19899 0.92600 0.99412 1.06838 1.20694 0.96147 0.95136 0.97014 1.24601 0.96789 0.97969 1.18687 1.16566 0.86719 0.80783 0.77017 1.90807 1.42110 1.57383 1.50910 1.48447 1.09054 1.04821 1.71515 1.22599 0.90298 0.89820 1.00913 1.23558 0.99135 0.95484 1.00808 1.21178 0.89037 0.89238 0.94324 0.91721 1.42668 1.48024 1.05819 1.39480 1.19236 1.19853 0.83702 1.14887 0.91001 1.24762 0.99377 0.97967 0.98519 1.69662 1.30910 1.34120 1.23107 0.86173 0.77975 0.85050 0.76834 1.21652 1.21771 1.20692 1.21870 0.82642 0.93458 0.99303 0.90671 1.22012 1.01222 1.01257 0.97251 1.83518 0.93693 1.05951 1.67902 0.90597 0.91190 0.90673 0.84389 0.83165 0.91146 0.90830 0.90391 0.90201 0.77031 0.93339 0.92404 0.89993 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.31 36.00 0.37 -0.18 16 2 C -0.22 -2.16 6.28 -35.86 -0.23 -2.38 16 3 C -0.16 -1.60 9.99 -41.41 -0.41 -2.02 16 4 C -0.06 -0.70 10.02 -40.44 -0.41 -1.11 16 5 C -0.26 -3.62 6.37 -36.79 -0.23 -3.85 16 6 C 0.60 10.17 7.56 -12.89 -0.10 10.07 16 7 O -0.53 -10.56 15.87 5.19 0.08 -10.48 16 8 N -0.61 -9.80 3.08 -164.57 -0.51 -10.31 16 9 C 0.09 1.20 5.61 -2.53 -0.01 1.19 16 10 C -0.15 -2.39 6.77 -24.58 -0.17 -2.56 16 11 C 0.17 3.31 3.45 -66.09 -0.23 3.08 16 12 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 13 N -0.72 -17.09 5.02 -51.64 -0.26 -17.35 16 14 C -0.25 -6.50 9.98 -15.06 -0.15 -6.65 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 18 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.13 2.34 3.47 -66.94 -0.23 2.11 16 23 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 24 C -0.16 -3.03 7.94 37.16 0.29 -2.73 16 25 S 0.22 2.36 18.50 -107.50 -1.99 0.37 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.07 0.86 4.91 -28.10 -0.14 0.73 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 9.90 4.94 -40.82 -0.20 9.70 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 37 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 38 H 0.08 1.67 6.73 -51.93 -0.35 1.32 16 39 H 0.06 1.15 6.85 -51.93 -0.36 0.79 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -30.98 328.50 -8.85 -39.83 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.24 Total: 8.30 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.60 Total: -5.41 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.04 Total: -54.25 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.99 Total: 0.37 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.98 -8.85 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985891105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.890 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds