Wall clock time and date at job start Fri Apr 10 2020 20:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33817 * 124.52473 * 2 1 4 4 C 1.37468 * 115.10253 * 180.02562 * 3 2 1 5 5 C 1.36644 * 113.29972 * 0.22822 * 4 3 2 6 6 C 1.46584 * 125.46260 * 179.76961 * 5 4 3 7 7 O 1.21701 * 119.99664 * 353.40257 * 6 5 4 8 8 N 1.34780 * 119.99978 * 173.39917 * 6 5 4 9 9 C 1.47423 * 125.64978 * 3.58512 * 8 6 5 10 10 C 1.54908 * 104.83149 * 204.09390 * 9 8 6 11 11 C 1.55158 * 101.58336 * 322.99179 * 10 9 8 12 12 H 1.09002 * 110.72140 * 277.14052 * 11 10 9 13 13 N 1.46498 * 110.71941 * 153.86600 * 11 10 9 14 14 C 1.36932 * 120.00034 * 86.45372 * 13 11 10 15 15 H 1.08002 * 120.00262 * 0.02562 * 14 13 11 16 16 C 1.38810 * 119.99931 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00103 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00083 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47276 * 90.00051 * 18 16 14 20 20 H 1.48501 * 109.47371 * 210.00701 * 18 16 14 21 21 H 1.48510 * 109.46949 * 330.00479 * 18 16 14 22 22 C 1.47020 * 125.64279 * 183.28510 * 8 6 5 23 23 H 1.08998 * 109.88100 * 298.38719 * 22 8 6 24 24 C 1.53001 * 109.88791 * 59.55747 * 22 8 6 25 25 S 1.70612 * 124.52266 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47399 * 90.00147 * 1 2 3 27 27 H 1.08996 * 109.47258 * 210.00310 * 1 2 3 28 28 H 1.09001 * 109.47100 * 329.99768 * 1 2 3 29 29 H 1.08000 * 122.44585 * 0.04002 * 3 2 1 30 30 H 1.08000 * 123.35258 * 179.97438 * 4 3 2 31 31 H 1.08996 * 110.36682 * 322.93630 * 9 8 6 32 32 H 1.09001 * 110.35933 * 85.25316 * 9 8 6 33 33 H 1.08996 * 111.00544 * 81.07116 * 10 9 8 34 34 H 1.09007 * 111.00349 * 204.88276 * 10 9 8 35 35 H 0.97000 * 119.99585 * 266.45238 * 13 11 10 36 36 H 0.97004 * 119.99712 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.47018 * 58.54718 * 24 22 8 38 38 H 1.09003 * 109.46987 * 178.54334 * 24 22 8 39 39 H 1.08995 * 109.46979 * 298.54749 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 3.9493 -0.4491 -0.0060 6 6 5.3123 -0.9883 -0.0127 7 8 6.2628 -0.2382 -0.1348 8 7 5.5129 -2.3148 0.1165 9 6 4.4563 -3.3398 0.1969 10 6 5.1154 -4.5317 0.9348 11 6 6.5583 -4.4909 0.3659 12 1 6.6077 -4.9991 -0.5971 13 7 7.5062 -5.0811 1.3143 14 6 7.7289 -6.4322 1.3086 15 1 7.2060 -7.0627 0.6046 16 6 8.6274 -6.9913 2.2068 17 7 9.2650 -6.2228 3.0644 18 14 8.9318 -8.8343 2.1986 19 1 10.0474 -9.1477 1.2700 20 1 9.2870 -9.2836 3.5687 21 1 7.7026 -9.5370 1.7504 22 6 6.8218 -2.9798 0.1944 23 1 7.3834 -2.8013 -0.7226 24 6 7.6036 -2.4506 1.3983 25 16 2.4739 -1.4057 -0.0006 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.8429 2.0964 0.0006 30 1 4.3550 1.6702 -0.0010 31 1 3.6061 -2.9643 0.7663 32 1 4.1418 -3.6394 -0.8029 33 1 5.1157 -4.3718 2.0129 34 1 4.6212 -5.4697 0.6812 35 1 7.9761 -4.5147 1.9462 36 1 9.8927 -6.6137 3.6923 37 1 7.0318 -2.6278 2.3092 38 1 8.5616 -2.9664 1.4646 39 1 7.7744 -1.3808 1.2788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985891105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:16 Heat of formation + Delta-G solvation = -0.766421 kcal Electronic energy + Delta-G solvation = -21365.165366 eV Core-core repulsion = 18206.158557 eV Total energy + Delta-G solvation = -3159.006808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.39892 -39.38464 -38.30890 -35.98517 -33.72646 -32.82956 -32.17104 -30.77664 -28.10179 -26.89796 -25.49977 -24.66321 -23.80206 -22.17916 -20.47593 -19.48928 -19.43190 -18.95423 -17.21694 -16.92954 -16.91103 -16.41405 -16.04082 -15.50779 -15.33288 -14.84762 -14.74470 -14.52266 -13.99983 -13.97355 -13.64884 -13.47828 -13.22889 -13.19037 -12.98099 -12.92658 -12.84871 -12.70498 -12.65313 -12.11325 -12.04799 -11.74346 -11.60219 -11.38166 -11.10463 -10.89911 -9.95430 -9.55001 -9.44218 -9.01415 -7.92376 -5.21922 -0.49302 0.48806 0.94568 1.38602 1.51215 1.52579 1.60710 1.79535 2.13670 2.59000 3.33583 3.44855 3.64792 3.84541 3.88350 3.93648 4.10167 4.27462 4.28911 4.33499 4.41516 4.48848 4.58089 4.63659 4.70537 4.76550 4.79658 4.98681 5.05857 5.10860 5.15963 5.18936 5.21543 5.29893 5.44917 5.46138 5.56419 6.28728 6.39147 6.97167 7.36428 8.08666 8.32822 9.31296 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.031440 B = 0.003592 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.364903 B = 7793.281606 C = 8422.636929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.207 4.207 3 C -0.169 4.169 4 C -0.053 4.053 5 C -0.305 4.305 6 C 0.597 3.403 7 O -0.576 6.576 8 N -0.607 5.607 9 C 0.094 3.906 10 C -0.138 4.138 11 C 0.168 3.832 12 H 0.073 0.927 13 N -0.731 5.731 14 C -0.238 4.238 15 H 0.084 0.916 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.973 3.027 19 H -0.291 1.291 20 H -0.300 1.300 21 H -0.264 1.264 22 C 0.135 3.865 23 H 0.070 0.930 24 C -0.145 4.145 25 S 0.251 5.749 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.381 0.619 36 H 0.250 0.750 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.192 11.026 -7.665 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.326 4.326 3 C -0.198 4.198 4 C -0.087 4.087 5 C -0.425 4.425 6 C 0.388 3.612 7 O -0.458 6.458 8 N -0.339 5.339 9 C -0.029 4.029 10 C -0.179 4.179 11 C 0.058 3.942 12 H 0.091 0.909 13 N -0.374 5.374 14 C -0.370 4.370 15 H 0.102 0.898 16 C -0.267 4.267 17 N -0.622 5.622 18 Si 0.803 3.197 19 H -0.218 1.218 20 H -0.227 1.227 21 H -0.189 1.189 22 C 0.031 3.969 23 H 0.088 0.912 24 C -0.203 4.203 25 S 0.520 5.480 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.217 0.783 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.049 9.756 -7.782 24.470 hybrid contribution 1.405 1.002 0.606 1.829 sum -19.644 10.758 -7.176 23.518 Atomic orbital electron populations 1.20539 0.85189 1.04604 1.04207 1.25210 1.03530 0.99105 1.04805 1.20087 0.91472 1.00961 1.07268 1.20897 0.97393 0.94633 0.95826 1.24392 0.96557 0.99223 1.22323 1.17030 0.87751 0.80459 0.76005 1.90768 1.43847 1.58270 1.52941 1.48442 1.08763 1.05257 1.71441 1.22727 0.89850 0.87938 1.02408 1.23361 0.97129 0.97609 0.99830 1.21371 0.89702 0.89378 0.93779 0.90915 1.42841 1.49150 1.05181 1.40245 1.19668 1.18537 0.84937 1.13865 0.89799 1.25561 1.00135 1.02052 0.98993 1.69829 1.32222 1.35735 1.24398 0.85140 0.78151 0.80379 0.76056 1.21793 1.22736 1.18902 1.21645 0.83751 0.93148 0.98319 0.91160 1.21827 1.00337 1.00582 0.97576 1.83179 0.91700 1.05823 1.67323 0.89017 0.90088 0.89113 0.81922 0.83765 0.89284 0.88047 0.92200 0.88362 0.78313 0.94124 0.93278 0.91933 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.31 71.23 0.73 -0.01 16 2 C -0.21 -3.24 6.28 24.68 0.15 -3.09 16 3 C -0.17 -2.97 9.99 21.08 0.21 -2.76 16 4 C -0.05 -1.26 10.02 21.71 0.22 -1.05 16 5 C -0.31 -8.18 6.37 24.08 0.15 -8.02 16 6 C 0.60 20.30 7.56 86.42 0.65 20.96 16 7 O -0.58 -23.63 15.87 -4.35 -0.07 -23.70 16 8 N -0.61 -19.38 3.08 -792.79 -2.44 -21.82 16 9 C 0.09 2.36 5.61 86.86 0.49 2.84 16 10 C -0.14 -4.24 6.77 31.99 0.22 -4.03 16 11 C 0.17 6.29 3.45 46.19 0.16 6.45 16 12 H 0.07 2.63 8.12 -2.39 -0.02 2.61 16 13 N -0.73 -35.36 5.02 -317.30 -1.59 -36.95 16 14 C -0.24 -12.57 9.98 84.03 0.84 -11.74 16 15 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 16 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 17 N -0.97 -58.64 13.06 21.65 0.28 -58.35 16 18 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 20 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 C 0.14 4.94 3.47 45.35 0.16 5.09 16 23 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 24 C -0.14 -5.79 7.94 71.98 0.57 -5.22 16 25 S 0.25 4.62 18.50 -56.49 -1.04 3.58 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.09 1.93 4.91 -17.54 -0.09 1.85 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.38 19.96 4.94 -92.71 -0.46 19.51 16 36 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 38 H 0.06 2.72 6.73 -2.39 -0.02 2.70 16 39 H 0.05 2.22 6.85 -2.39 -0.02 2.20 16 Total: -1.00 -68.67 328.50 2.71 -65.96 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.53 Total: 28.67 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.02 Total: -4.30 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -3.75 Total: -117.13 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.07 Total: -23.70 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.04 Total: 3.58 kcal Total: -68.67 2.71 -65.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985891105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.193 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds