Wall clock time and date at job start Fri Apr 10 2020 20:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.70446 * 124.59053 * 2 1 4 4 C 1.75505 * 92.44525 * 179.97438 * 3 2 1 5 5 C 1.32774 * 110.57476 * 359.73925 * 4 3 2 6 6 C 1.36009 * 124.59216 * 179.97438 * 2 1 3 7 7 C 1.47191 * 123.45828 * 0.02562 * 6 2 1 8 8 O 1.21634 * 120.00491 * 335.17393 * 7 6 2 9 9 N 1.34783 * 119.99730 * 155.17344 * 7 6 2 10 10 C 1.47428 * 125.64854 * 354.56913 * 9 7 6 11 11 C 1.54910 * 104.83178 * 204.16640 * 10 9 7 12 12 C 1.55159 * 101.57809 * 322.98717 * 11 10 9 13 13 H 1.08998 * 110.72607 * 277.13642 * 12 11 10 14 14 N 1.46509 * 110.71672 * 153.86528 * 12 11 10 15 15 C 1.36940 * 119.99721 * 86.45540 * 14 12 11 16 16 H 1.08001 * 120.00099 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99606 * 179.97438 * 15 14 12 18 18 N 1.31612 * 120.00348 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99752 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47453 * 59.99573 * 19 17 15 21 21 H 1.48499 * 109.47371 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46865 * 299.99969 * 19 17 15 23 23 C 1.47020 * 125.64752 * 174.61162 * 9 7 6 24 24 H 1.09002 * 109.88512 * 59.33243 * 23 9 7 25 25 C 1.53002 * 109.88173 * 298.31934 * 23 9 7 26 26 H 1.08996 * 109.46804 * 270.03680 * 1 2 3 27 27 H 1.09001 * 109.46560 * 30.04177 * 1 2 3 28 28 H 1.09002 * 109.46925 * 150.04150 * 1 2 3 29 29 H 1.08001 * 124.71588 * 179.97438 * 4 3 2 30 30 H 1.08003 * 123.45881 * 180.24761 * 5 4 3 31 31 H 1.08999 * 110.36840 * 85.32468 * 10 9 7 32 32 H 1.09002 * 110.45816 * 323.04527 * 10 9 7 33 33 H 1.08994 * 111.00523 * 81.06085 * 11 10 9 34 34 H 1.08995 * 111.00653 * 204.91753 * 11 10 9 35 35 H 0.97001 * 119.99872 * 266.45321 * 14 12 11 36 36 H 0.96998 * 120.00515 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46656 * 61.45705 * 25 23 9 38 38 H 1.09000 * 109.46906 * 181.45489 * 25 23 9 39 39 H 1.08997 * 109.47002 * 301.45754 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9607 0.4694 0.0008 5 6 3.6944 -0.8314 0.0067 6 6 2.2792 -1.1196 0.0005 7 6 1.7290 -2.4849 0.0006 8 8 0.6148 -2.6916 0.4424 9 7 2.4600 -3.5060 -0.4891 10 6 3.7699 -3.3835 -1.1543 11 6 3.8827 -4.6468 -2.0437 12 6 3.2066 -5.7190 -1.1489 13 1 3.9131 -6.1130 -0.4184 14 7 2.6477 -6.7988 -1.9663 15 6 3.4360 -7.8557 -2.3361 16 1 4.4698 -7.8931 -2.0256 17 6 2.9064 -8.8791 -3.1101 18 7 1.6465 -8.8338 -3.4881 19 14 3.9814 -10.3212 -3.6140 20 1 4.4832 -11.0128 -2.3994 21 1 3.1845 -11.2709 -4.4315 22 1 5.1316 -9.8260 -4.4123 23 6 2.0825 -4.9263 -0.4490 24 1 1.1390 -5.0742 -0.9744 25 6 1.9470 -5.3879 1.0034 26 1 -0.3633 0.0007 1.0276 27 1 -0.3632 0.8896 -0.5145 28 1 -0.3633 -0.8904 -0.5132 29 1 4.9538 0.8938 0.0006 30 1 4.4577 -1.5955 0.0121 31 1 4.5707 -3.3672 -0.4151 32 1 3.8028 -2.4833 -1.7682 33 1 3.3366 -4.5168 -2.9780 34 1 4.9258 -4.8985 -2.2345 35 1 1.7194 -6.7650 -2.2454 36 1 1.2765 -9.5487 -4.0293 37 1 1.1607 -4.8150 1.4948 38 1 1.6925 -6.4476 1.0256 39 1 2.8913 -5.2300 1.5244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986251295.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:26 Heat of formation + Delta-G solvation = 11.772884 kcal Electronic energy + Delta-G solvation = -21537.700630 eV Core-core repulsion = 18379.237567 eV Total energy + Delta-G solvation = -3158.463063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22147 -37.91102 -36.68385 -34.14544 -32.13752 -31.57196 -30.91892 -29.26136 -27.05589 -25.30196 -24.09647 -22.99924 -22.45691 -20.63382 -19.93639 -18.48080 -17.42133 -17.11706 -16.28046 -15.86760 -15.41914 -14.76892 -14.42288 -13.97958 -13.70609 -13.54370 -13.42377 -13.29212 -12.88951 -12.77407 -12.46706 -12.28477 -12.13069 -11.84496 -11.78780 -11.56228 -11.16875 -11.08382 -11.02715 -10.80513 -10.57585 -10.28375 -10.03352 -9.77205 -9.57080 -8.97328 -8.92413 -8.61668 -8.31744 -7.03689 -5.81829 -3.12425 0.70696 1.34560 1.73527 1.95729 3.22608 3.37835 3.41113 3.46078 3.46956 4.54308 4.55163 4.66394 4.92591 5.05331 5.11013 5.30295 5.34499 5.38836 5.49255 5.52054 5.60172 5.64628 5.77174 5.79445 5.83747 5.97122 6.07127 6.09789 6.12903 6.14729 6.30526 6.45539 6.57861 6.61286 6.75895 6.92826 7.64556 7.77809 8.34812 8.37726 9.46854 10.01413 10.36256 11.40300 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.003453 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.035543 B = 8107.419414 C = 8487.162223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.146 4.146 3 S 0.164 5.836 4 C -0.238 4.238 5 C -0.107 4.107 6 C -0.164 4.164 7 C 0.591 3.409 8 O -0.539 6.539 9 N -0.602 5.602 10 C 0.097 3.903 11 C -0.157 4.157 12 C 0.177 3.823 13 H 0.065 0.935 14 N -0.715 5.715 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.128 3.872 24 H 0.078 0.922 25 C -0.154 4.154 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 20.569 7.352 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.266 4.266 3 S 0.429 5.571 4 C -0.372 4.372 5 C -0.136 4.136 6 C -0.180 4.180 7 C 0.379 3.621 8 O -0.418 6.418 9 N -0.335 5.335 10 C -0.026 4.026 11 C -0.198 4.198 12 C 0.065 3.935 13 H 0.083 0.917 14 N -0.355 5.355 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.025 3.975 24 H 0.096 0.904 25 C -0.212 4.212 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.185 0.815 30 H 0.172 0.828 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.257 21.881 7.573 23.383 hybrid contribution 0.816 -2.316 -0.489 2.504 sum 4.073 19.565 7.085 21.204 Atomic orbital electron populations 1.20463 0.86826 1.03485 1.03577 1.24453 1.01690 0.96740 1.03700 1.82959 0.95356 1.07677 1.71136 1.25385 1.02076 0.97146 1.12627 1.21561 0.94930 0.96475 1.00587 1.20184 0.92846 0.93695 1.11303 1.17179 0.84184 0.82855 0.77921 1.90758 1.18904 1.84348 1.47757 1.48375 1.20834 1.06789 1.57515 1.22569 0.84604 1.00042 0.95363 1.23596 1.02297 0.94512 0.99381 1.21239 0.92303 0.88001 0.91942 0.91739 1.42339 1.12251 1.20860 1.60067 1.19155 0.93788 0.97938 1.26679 0.91047 1.24759 0.96203 0.98910 1.00708 1.69650 1.12492 1.34356 1.41254 0.86259 0.79323 0.82339 0.78170 1.21184 1.21680 1.21211 1.21901 0.99846 0.78755 0.97023 0.90355 1.22041 1.01554 1.02044 0.95548 0.89958 0.91592 0.89135 0.81510 0.82777 0.91780 0.90989 0.90594 0.90539 0.77964 0.93308 0.92166 0.91034 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.41 36.01 0.34 -0.62 16 2 C -0.15 -1.76 6.33 -35.11 -0.22 -1.99 16 3 S 0.16 1.48 22.97 -107.50 -2.47 -0.99 16 4 C -0.24 -2.14 11.12 28.86 0.32 -1.82 16 5 C -0.11 -1.16 8.52 -39.02 -0.33 -1.49 16 6 C -0.16 -2.23 5.68 -104.63 -0.59 -2.82 16 7 C 0.59 9.77 7.29 -12.62 -0.09 9.67 16 8 O -0.54 -10.28 14.10 5.25 0.07 -10.21 16 9 N -0.60 -9.63 3.06 -164.35 -0.50 -10.14 16 10 C 0.10 1.31 5.10 -2.53 -0.01 1.30 16 11 C -0.16 -2.57 6.77 -24.58 -0.17 -2.74 16 12 C 0.18 3.38 3.12 -66.09 -0.21 3.17 16 13 H 0.06 1.23 7.83 -51.93 -0.41 0.82 16 14 N -0.71 -17.33 5.25 -51.64 -0.27 -17.60 16 15 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 19 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.13 2.30 3.18 -66.95 -0.21 2.09 16 24 H 0.08 1.59 7.69 -51.93 -0.40 1.19 16 25 C -0.15 -2.60 9.11 37.16 0.34 -2.26 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.22 6.69 -51.93 -0.35 0.88 16 29 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.15 1.49 5.43 -52.48 -0.29 1.20 16 31 H 0.06 0.73 7.02 -51.93 -0.36 0.37 16 32 H 0.07 0.88 6.88 -51.93 -0.36 0.52 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.39 10.13 7.51 -40.82 -0.31 9.83 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 1.05 7.07 -51.93 -0.37 0.68 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -30.88 329.58 -8.93 -39.81 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.34 Total: 8.75 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.09 Total: -4.54 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.05 Total: -54.63 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.47 Total: -0.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.88 -8.93 -39.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986251295.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.585 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds