Wall clock time and date at job start Fri Apr 10 2020 20:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.70446 * 124.59053 * 2 1 4 4 C 1.75505 * 92.44525 * 179.97438 * 3 2 1 5 5 C 1.32774 * 110.57476 * 359.73925 * 4 3 2 6 6 C 1.36009 * 124.59216 * 179.97438 * 2 1 3 7 7 C 1.47191 * 123.45828 * 0.02562 * 6 2 1 8 8 O 1.21634 * 120.00491 * 335.17393 * 7 6 2 9 9 N 1.34783 * 119.99730 * 155.17344 * 7 6 2 10 10 C 1.47428 * 125.64854 * 354.56913 * 9 7 6 11 11 C 1.54910 * 104.83178 * 204.16640 * 10 9 7 12 12 C 1.55159 * 101.57809 * 322.98717 * 11 10 9 13 13 H 1.08998 * 110.72607 * 277.13642 * 12 11 10 14 14 N 1.46509 * 110.71672 * 153.86528 * 12 11 10 15 15 C 1.36940 * 119.99721 * 86.45540 * 14 12 11 16 16 H 1.08001 * 120.00099 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99606 * 179.97438 * 15 14 12 18 18 N 1.31612 * 120.00348 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99752 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47453 * 59.99573 * 19 17 15 21 21 H 1.48499 * 109.47371 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46865 * 299.99969 * 19 17 15 23 23 C 1.47020 * 125.64752 * 174.61162 * 9 7 6 24 24 H 1.09002 * 109.88512 * 59.33243 * 23 9 7 25 25 C 1.53002 * 109.88173 * 298.31934 * 23 9 7 26 26 H 1.08996 * 109.46804 * 270.03680 * 1 2 3 27 27 H 1.09001 * 109.46560 * 30.04177 * 1 2 3 28 28 H 1.09002 * 109.46925 * 150.04150 * 1 2 3 29 29 H 1.08001 * 124.71588 * 179.97438 * 4 3 2 30 30 H 1.08003 * 123.45881 * 180.24761 * 5 4 3 31 31 H 1.08999 * 110.36840 * 85.32468 * 10 9 7 32 32 H 1.09002 * 110.45816 * 323.04527 * 10 9 7 33 33 H 1.08994 * 111.00523 * 81.06085 * 11 10 9 34 34 H 1.08995 * 111.00653 * 204.91753 * 11 10 9 35 35 H 0.97001 * 119.99872 * 266.45321 * 14 12 11 36 36 H 0.96998 * 120.00515 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46656 * 61.45705 * 25 23 9 38 38 H 1.09000 * 109.46906 * 181.45489 * 25 23 9 39 39 H 1.08997 * 109.47002 * 301.45754 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9607 0.4694 0.0008 5 6 3.6944 -0.8314 0.0067 6 6 2.2792 -1.1196 0.0005 7 6 1.7290 -2.4849 0.0006 8 8 0.6148 -2.6916 0.4424 9 7 2.4600 -3.5060 -0.4891 10 6 3.7699 -3.3835 -1.1543 11 6 3.8827 -4.6468 -2.0437 12 6 3.2066 -5.7190 -1.1489 13 1 3.9131 -6.1130 -0.4184 14 7 2.6477 -6.7988 -1.9663 15 6 3.4360 -7.8557 -2.3361 16 1 4.4698 -7.8931 -2.0256 17 6 2.9064 -8.8791 -3.1101 18 7 1.6465 -8.8338 -3.4881 19 14 3.9814 -10.3212 -3.6140 20 1 4.4832 -11.0128 -2.3994 21 1 3.1845 -11.2709 -4.4315 22 1 5.1316 -9.8260 -4.4123 23 6 2.0825 -4.9263 -0.4490 24 1 1.1390 -5.0742 -0.9744 25 6 1.9470 -5.3879 1.0034 26 1 -0.3633 0.0007 1.0276 27 1 -0.3632 0.8896 -0.5145 28 1 -0.3633 -0.8904 -0.5132 29 1 4.9538 0.8938 0.0006 30 1 4.4577 -1.5955 0.0121 31 1 4.5707 -3.3672 -0.4151 32 1 3.8028 -2.4833 -1.7682 33 1 3.3366 -4.5168 -2.9780 34 1 4.9258 -4.8985 -2.2345 35 1 1.7194 -6.7650 -2.2454 36 1 1.2765 -9.5487 -4.0293 37 1 1.1607 -4.8150 1.4948 38 1 1.6925 -6.4476 1.0256 39 1 2.8913 -5.2300 1.5244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986251295.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:26 Heat of formation + Delta-G solvation = -7.412789 kcal Electronic energy + Delta-G solvation = -21538.532583 eV Core-core repulsion = 18379.237567 eV Total energy + Delta-G solvation = -3159.295016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46268 -39.16225 -37.76827 -35.93583 -33.45478 -32.83849 -32.31754 -30.90560 -28.04167 -26.89890 -25.38068 -24.50661 -23.63087 -21.72945 -21.33837 -19.73841 -19.11194 -18.14478 -17.58478 -17.03223 -16.60113 -16.50142 -15.58851 -15.51448 -15.08000 -14.72295 -14.69334 -14.57237 -14.13785 -13.96764 -13.63741 -13.51586 -13.32394 -13.11343 -13.02508 -12.87347 -12.67488 -12.55887 -12.49183 -12.20419 -12.10065 -11.90302 -11.68831 -11.56130 -10.92114 -10.83979 -9.84936 -9.59889 -9.32654 -9.02410 -7.93122 -5.23560 -0.16922 0.57057 0.96323 1.07197 1.49962 1.52892 1.58771 1.98869 2.23596 2.58577 3.37552 3.54043 3.72677 3.75743 3.82241 4.02267 4.14908 4.18739 4.31300 4.39132 4.39824 4.50937 4.60896 4.63170 4.66300 4.70756 4.91204 4.94414 5.03099 5.07281 5.16908 5.19268 5.21752 5.33090 5.37270 5.46622 5.55198 6.26645 6.54241 7.11789 7.33091 8.04800 8.29047 9.30348 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.003453 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.035543 B = 8107.419414 C = 8487.162223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.169 4.169 3 S 0.225 5.775 4 C -0.227 4.227 5 C -0.121 4.121 6 C -0.190 4.190 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.604 5.604 10 C 0.106 3.894 11 C -0.148 4.148 12 C 0.172 3.828 13 H 0.074 0.926 14 N -0.730 5.730 15 C -0.238 4.238 16 H 0.085 0.915 17 C -0.076 4.076 18 N -0.972 5.972 19 Si 0.975 3.025 20 H -0.277 1.277 21 H -0.301 1.301 22 H -0.275 1.275 23 C 0.134 3.866 24 H 0.043 0.957 25 C -0.143 4.143 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.168 0.832 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.370 0.630 36 H 0.250 0.750 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 23.005 7.994 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.289 4.289 3 S 0.491 5.509 4 C -0.361 4.361 5 C -0.149 4.149 6 C -0.207 4.207 7 C 0.374 3.626 8 O -0.460 6.460 9 N -0.336 5.336 10 C -0.016 4.016 11 C -0.189 4.189 12 C 0.063 3.937 13 H 0.091 0.909 14 N -0.369 5.369 15 C -0.370 4.370 16 H 0.103 0.897 17 C -0.268 4.268 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.201 1.201 23 C 0.030 3.970 24 H 0.061 0.939 25 C -0.201 4.201 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.219 0.781 30 H 0.185 0.815 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.424 24.371 8.240 26.516 hybrid contribution -0.166 -2.897 -0.635 2.971 sum 6.258 21.474 7.605 23.625 Atomic orbital electron populations 1.20421 0.87148 1.03219 1.03460 1.24739 1.02276 0.98349 1.03543 1.82781 0.94156 1.04998 1.69013 1.25838 1.03609 0.96514 1.10162 1.21583 0.93541 0.97749 1.02019 1.20144 0.94661 0.92010 1.13900 1.17767 0.83696 0.84060 0.77065 1.90728 1.20655 1.85100 1.49478 1.48407 1.21824 1.05665 1.57737 1.22704 0.84109 0.99094 0.95683 1.23417 1.02362 0.94874 0.98261 1.21427 0.92683 0.87536 0.92099 0.90860 1.42522 1.11528 1.21960 1.60878 1.19600 0.94347 0.97967 1.25049 0.89741 1.25587 0.97426 1.01915 1.01832 1.69830 1.14458 1.35133 1.42865 0.85198 0.77653 0.78984 0.77825 1.20279 1.22747 1.20066 1.21616 0.97935 0.80456 0.97039 0.93915 1.21925 1.02193 1.01029 0.94953 0.90047 0.89077 0.92182 0.78135 0.81523 0.88390 0.89004 0.92930 0.88861 0.79802 0.94123 0.93190 0.92114 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 9.41 71.24 0.67 -1.23 16 2 C -0.17 -3.84 6.33 25.17 0.16 -3.68 16 3 S 0.22 3.27 22.97 -56.49 -1.30 1.97 16 4 C -0.23 -3.05 11.12 66.64 0.74 -2.31 16 5 C -0.12 -2.23 8.52 22.67 0.19 -2.03 16 6 C -0.19 -4.91 5.68 -19.87 -0.11 -5.03 16 7 C 0.58 19.47 7.29 86.59 0.63 20.11 16 8 O -0.58 -23.13 14.10 -4.14 -0.06 -23.19 16 9 N -0.60 -19.12 3.06 -792.13 -2.43 -21.55 16 10 C 0.11 2.60 5.10 86.85 0.44 3.04 16 11 C -0.15 -4.67 6.77 31.99 0.22 -4.45 16 12 C 0.17 6.55 3.12 46.18 0.14 6.69 16 13 H 0.07 2.68 7.83 -2.39 -0.02 2.66 16 14 N -0.73 -36.20 5.25 -317.31 -1.67 -37.86 16 15 C -0.24 -12.75 9.98 84.03 0.84 -11.91 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 18 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 19 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.13 4.94 3.18 45.34 0.14 5.09 16 24 H 0.04 1.87 7.69 -2.39 -0.02 1.85 16 25 C -0.14 -4.91 9.11 71.98 0.66 -4.25 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.72 6.69 -2.39 -0.02 1.70 16 29 H 0.20 1.32 8.06 -2.91 -0.02 1.29 16 30 H 0.17 2.51 5.43 -2.91 -0.02 2.50 16 31 H 0.10 1.81 7.02 -2.39 -0.02 1.80 16 32 H 0.09 1.96 6.88 -2.39 -0.02 1.94 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.37 20.45 7.51 -92.71 -0.70 19.75 16 36 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.05 1.80 7.07 -2.39 -0.02 1.79 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.88 329.58 2.42 -67.45 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.37 Total: 29.03 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 5.19 Total: -3.76 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -3.81 Total: -118.78 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.30 Total: 1.97 kcal Total: -69.88 2.42 -67.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986251295.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.040 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds