Wall clock time and date at job start Fri Apr 10 2020 20:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32772 * 124.71372 * 2 1 4 4 C 1.44432 * 113.08675 * 180.18024 * 3 2 1 5 5 C 1.47188 * 123.46056 * 179.80582 * 4 3 2 6 6 O 1.21631 * 119.99823 * 187.99009 * 5 4 3 7 7 N 1.34775 * 120.00159 * 7.99274 * 5 4 3 8 8 C 1.47432 * 125.64635 * 6.95175 * 7 5 4 9 9 C 1.54905 * 104.82905 * 155.82655 * 8 7 5 10 10 C 1.55156 * 101.58718 * 37.00436 * 9 8 7 11 11 H 1.08999 * 110.72622 * 205.95615 * 10 9 8 12 12 N 1.46504 * 110.71871 * 82.86270 * 10 9 8 13 13 C 1.36934 * 120.00357 * 88.16429 * 12 10 9 14 14 H 1.08001 * 119.99832 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00184 * 180.02562 * 13 12 10 16 16 N 1.31615 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99907 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47150 * 90.00322 * 17 15 13 19 19 H 1.48497 * 109.47352 * 330.00244 * 17 15 13 20 20 H 1.48505 * 109.46943 * 210.00192 * 17 15 13 21 21 C 1.47016 * 125.64742 * 186.89163 * 7 5 4 22 22 H 1.08997 * 109.88435 * 300.52202 * 21 7 5 23 23 C 1.53001 * 109.88312 * 61.68948 * 21 7 5 24 24 C 1.36008 * 113.07391 * 359.54360 * 4 3 2 25 25 S 1.70448 * 110.81714 * 0.24253 * 24 4 3 26 26 H 1.09001 * 109.47084 * 180.27340 * 1 2 3 27 27 H 1.08996 * 109.47115 * 300.27299 * 1 2 3 28 28 H 1.09002 * 109.46894 * 60.27317 * 1 2 3 29 29 H 1.08004 * 123.45984 * 359.97438 * 3 2 1 30 30 H 1.08991 * 110.36807 * 36.98229 * 8 7 5 31 31 H 1.09000 * 110.45282 * 274.70746 * 8 7 5 32 32 H 1.09000 * 111.00601 * 278.92918 * 9 8 7 33 33 H 1.09006 * 111.00524 * 155.08002 * 9 8 7 34 34 H 0.97008 * 119.99677 * 268.16077 * 12 10 9 35 35 H 0.97003 * 119.99828 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47557 * 170.10123 * 23 21 7 37 37 H 1.09000 * 109.47049 * 290.10888 * 23 21 7 38 38 H 1.09008 * 109.46540 * 50.10482 * 23 21 7 39 39 H 1.08001 * 124.58951 * 180.20656 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6777 0.8003 -0.0042 5 6 4.7201 1.8395 -0.0092 6 8 5.8867 1.5299 -0.1589 7 7 4.3818 3.1341 0.1522 8 6 3.0360 3.6354 0.4856 9 6 3.2797 5.0122 1.1523 10 6 4.4737 5.5534 0.3224 11 1 5.0580 6.2648 0.9059 12 7 4.0039 6.1684 -0.9215 13 6 3.6576 7.4930 -0.9423 14 1 3.7305 8.0844 -0.0415 15 6 3.2120 8.0756 -2.1208 16 7 2.8797 9.3489 -2.1408 17 14 3.0852 7.0526 -3.6786 18 1 1.7342 6.4418 -3.7612 19 1 4.1123 5.9804 -3.6517 20 1 3.3084 7.9223 -4.8614 21 6 5.2940 4.2801 0.0263 22 1 6.1073 4.1875 0.7459 23 6 5.8574 4.3430 -1.3948 24 6 3.9477 -0.5327 0.0027 25 16 2.5064 -1.4426 0.0075 26 1 -0.3633 -1.0277 0.0049 27 1 -0.3633 0.5180 0.8875 28 1 -0.3633 0.5096 -0.8925 29 1 1.8615 2.0940 -0.0004 30 1 2.5410 2.9588 1.1821 31 1 2.4383 3.7521 -0.4184 32 1 3.5537 4.8956 2.2009 33 1 2.4070 5.6569 1.0476 34 1 3.9381 5.6371 -1.7305 35 1 2.5686 9.7561 -2.9644 36 1 6.3890 5.2844 -1.5337 37 1 6.5445 3.5113 -1.5504 38 1 5.0398 4.2781 -2.1129 39 1 4.9408 -0.9571 0.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987172052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:31 Heat of formation + Delta-G solvation = 26.459480 kcal Electronic energy + Delta-G solvation = -21834.652784 eV Core-core repulsion = 18676.826579 eV Total energy + Delta-G solvation = -3157.826204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31222 -37.98636 -36.96993 -34.12550 -32.25480 -31.66622 -30.99924 -29.44007 -27.00089 -25.51094 -24.95769 -23.17228 -22.27109 -19.96616 -19.69992 -18.73471 -17.89389 -17.59101 -16.29698 -15.87319 -15.38260 -14.67213 -14.48089 -14.12339 -14.03507 -13.65538 -13.47024 -13.40799 -12.93889 -12.76718 -12.55572 -12.29366 -12.19509 -12.10716 -11.87942 -11.56816 -11.28158 -11.12938 -11.00437 -10.75258 -10.63630 -10.31088 -10.12139 -9.73806 -9.60358 -9.01321 -8.95964 -8.63887 -8.37067 -7.36139 -5.84543 -3.20869 0.67497 1.33932 1.70986 1.89282 3.22135 3.31545 3.35598 3.40677 3.41174 4.44163 4.52220 4.72438 4.90620 4.99038 5.03416 5.17754 5.22158 5.28975 5.31024 5.39504 5.51996 5.57923 5.63366 5.68342 5.72471 5.80334 5.88265 6.00344 6.15801 6.17282 6.25845 6.35238 6.47594 6.62457 6.68274 6.77615 7.71591 7.91454 8.31326 8.34586 9.12186 9.84578 10.03828 11.33443 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.004561 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.703848 B = 6137.572617 C = 6648.418748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.199 4.199 3 C -0.132 4.132 4 C -0.148 4.148 5 C 0.590 3.410 6 O -0.546 6.546 7 N -0.603 5.603 8 C 0.095 3.905 9 C -0.160 4.160 10 C 0.178 3.822 11 H 0.078 0.922 12 N -0.739 5.739 13 C -0.247 4.247 14 H 0.093 0.907 15 C 0.010 3.990 16 N -0.930 5.930 17 Si 0.877 3.123 18 H -0.284 1.284 19 H -0.276 1.276 20 H -0.290 1.290 21 C 0.126 3.874 22 H 0.078 0.922 23 C -0.152 4.152 24 C -0.186 4.186 25 S 0.170 5.830 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.167 0.833 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.365 0.635 35 H 0.260 0.740 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -20.448 6.370 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.316 4.316 3 C -0.160 4.160 4 C -0.165 4.165 5 C 0.378 3.622 6 O -0.425 6.425 7 N -0.336 5.336 8 C -0.027 4.027 9 C -0.201 4.201 10 C 0.067 3.933 11 H 0.096 0.904 12 N -0.382 5.382 13 C -0.377 4.377 14 H 0.110 0.890 15 C -0.186 4.186 16 N -0.578 5.578 17 Si 0.707 3.293 18 H -0.211 1.211 19 H -0.202 1.202 20 H -0.216 1.216 21 C 0.022 3.978 22 H 0.096 0.904 23 C -0.210 4.210 24 C -0.324 4.324 25 S 0.436 5.564 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.184 0.816 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.200 0.800 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.297 -21.953 6.318 23.081 hybrid contribution 0.196 0.901 -1.281 1.578 sum -3.102 -21.052 5.037 21.867 Atomic orbital electron populations 1.20345 0.87439 1.02857 1.03409 1.24413 1.00454 0.95930 1.10785 1.21978 0.91247 1.00757 1.02048 1.20236 0.93500 0.93177 1.09608 1.17216 0.87395 0.80786 0.76772 1.90758 1.19197 1.81448 1.51110 1.48459 1.11581 1.04847 1.68671 1.22717 0.84331 0.96150 0.99520 1.23533 1.02748 0.95150 0.98644 1.21177 0.92348 0.91046 0.88771 0.90375 1.42874 1.79569 1.09336 1.06463 1.19057 1.36656 0.84532 0.97431 0.88961 1.24627 1.01099 0.95599 0.97254 1.69689 1.50410 1.10478 1.27184 0.86684 0.77969 0.79914 0.84715 1.21079 1.20188 1.21606 1.22007 0.92487 0.85280 0.98009 0.90418 1.21985 1.01019 1.02375 0.95667 1.25469 1.04462 0.97052 1.05455 1.82931 0.93972 1.08977 1.70557 0.91464 0.90336 0.90332 0.81582 0.90516 0.91107 0.91524 0.88885 0.80018 0.92962 0.90681 0.92555 0.92701 0.80909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.35 36.00 0.37 -0.22 16 2 C -0.20 -2.00 6.44 -36.18 -0.23 -2.23 16 3 C -0.13 -1.57 8.51 -39.02 -0.33 -1.91 16 4 C -0.15 -2.07 5.92 -104.63 -0.62 -2.69 16 5 C 0.59 9.90 7.54 -12.63 -0.10 9.81 16 6 O -0.55 -10.60 16.22 5.25 0.09 -10.52 16 7 N -0.60 -9.64 3.06 -164.36 -0.50 -10.15 16 8 C 0.10 1.34 4.95 -2.53 -0.01 1.33 16 9 C -0.16 -2.42 6.77 -24.59 -0.17 -2.59 16 10 C 0.18 3.19 3.47 -66.09 -0.23 2.96 16 11 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 12 N -0.74 -16.25 4.41 -51.65 -0.23 -16.48 16 13 C -0.25 -6.54 10.45 -15.06 -0.16 -6.69 16 14 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 15 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 16 N -0.93 -28.27 13.97 55.49 0.78 -27.49 16 17 Si 0.88 21.53 27.73 -169.99 -4.71 16.81 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 C 0.13 2.12 3.40 -66.95 -0.23 1.90 16 22 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 23 C -0.15 -2.74 8.12 37.16 0.30 -2.43 16 24 C -0.19 -2.26 10.53 29.93 0.32 -1.94 16 25 S 0.17 1.58 22.99 -107.50 -2.47 -0.89 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.17 1.88 4.26 -52.48 -0.22 1.65 16 30 H 0.08 0.91 6.02 -51.93 -0.31 0.60 16 31 H 0.07 1.04 7.44 -51.93 -0.39 0.65 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.36 8.14 3.59 -40.82 -0.15 8.00 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 37 H 0.06 1.01 7.38 -51.93 -0.38 0.62 16 38 H 0.05 1.05 6.67 -51.92 -0.35 0.70 16 39 H 0.17 2.00 8.03 -52.49 -0.42 1.58 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -31.54 325.89 -8.52 -40.06 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.19 Total: 8.26 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.18 Total: -4.52 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.04 Total: -54.11 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.47 Total: -0.89 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.54 -8.52 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987172052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.519 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds