Wall clock time and date at job start Fri Apr 10 2020 20:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32772 * 124.71372 * 2 1 4 4 C 1.44432 * 113.08675 * 180.18024 * 3 2 1 5 5 C 1.47188 * 123.46056 * 179.80582 * 4 3 2 6 6 O 1.21631 * 119.99823 * 187.99009 * 5 4 3 7 7 N 1.34775 * 120.00159 * 7.99274 * 5 4 3 8 8 C 1.47432 * 125.64635 * 6.95175 * 7 5 4 9 9 C 1.54905 * 104.82905 * 155.82655 * 8 7 5 10 10 C 1.55156 * 101.58718 * 37.00436 * 9 8 7 11 11 H 1.08999 * 110.72622 * 205.95615 * 10 9 8 12 12 N 1.46504 * 110.71871 * 82.86270 * 10 9 8 13 13 C 1.36934 * 120.00357 * 88.16429 * 12 10 9 14 14 H 1.08001 * 119.99832 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00184 * 180.02562 * 13 12 10 16 16 N 1.31615 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99907 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47150 * 90.00322 * 17 15 13 19 19 H 1.48497 * 109.47352 * 330.00244 * 17 15 13 20 20 H 1.48505 * 109.46943 * 210.00192 * 17 15 13 21 21 C 1.47016 * 125.64742 * 186.89163 * 7 5 4 22 22 H 1.08997 * 109.88435 * 300.52202 * 21 7 5 23 23 C 1.53001 * 109.88312 * 61.68948 * 21 7 5 24 24 C 1.36008 * 113.07391 * 359.54360 * 4 3 2 25 25 S 1.70448 * 110.81714 * 0.24253 * 24 4 3 26 26 H 1.09001 * 109.47084 * 180.27340 * 1 2 3 27 27 H 1.08996 * 109.47115 * 300.27299 * 1 2 3 28 28 H 1.09002 * 109.46894 * 60.27317 * 1 2 3 29 29 H 1.08004 * 123.45984 * 359.97438 * 3 2 1 30 30 H 1.08991 * 110.36807 * 36.98229 * 8 7 5 31 31 H 1.09000 * 110.45282 * 274.70746 * 8 7 5 32 32 H 1.09000 * 111.00601 * 278.92918 * 9 8 7 33 33 H 1.09006 * 111.00524 * 155.08002 * 9 8 7 34 34 H 0.97008 * 119.99677 * 268.16077 * 12 10 9 35 35 H 0.97003 * 119.99828 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47557 * 170.10123 * 23 21 7 37 37 H 1.09000 * 109.47049 * 290.10888 * 23 21 7 38 38 H 1.09008 * 109.46540 * 50.10482 * 23 21 7 39 39 H 1.08001 * 124.58951 * 180.20656 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6777 0.8003 -0.0042 5 6 4.7201 1.8395 -0.0092 6 8 5.8867 1.5299 -0.1589 7 7 4.3818 3.1341 0.1522 8 6 3.0360 3.6354 0.4856 9 6 3.2797 5.0122 1.1523 10 6 4.4737 5.5534 0.3224 11 1 5.0580 6.2648 0.9059 12 7 4.0039 6.1684 -0.9215 13 6 3.6576 7.4930 -0.9423 14 1 3.7305 8.0844 -0.0415 15 6 3.2120 8.0756 -2.1208 16 7 2.8797 9.3489 -2.1408 17 14 3.0852 7.0526 -3.6786 18 1 1.7342 6.4418 -3.7612 19 1 4.1123 5.9804 -3.6517 20 1 3.3084 7.9223 -4.8614 21 6 5.2940 4.2801 0.0263 22 1 6.1073 4.1875 0.7459 23 6 5.8574 4.3430 -1.3948 24 6 3.9477 -0.5327 0.0027 25 16 2.5064 -1.4426 0.0075 26 1 -0.3633 -1.0277 0.0049 27 1 -0.3633 0.5180 0.8875 28 1 -0.3633 0.5096 -0.8925 29 1 1.8615 2.0940 -0.0004 30 1 2.5410 2.9588 1.1821 31 1 2.4383 3.7521 -0.4184 32 1 3.5537 4.8956 2.2009 33 1 2.4070 5.6569 1.0476 34 1 3.9381 5.6371 -1.7305 35 1 2.5686 9.7561 -2.9644 36 1 6.3890 5.2844 -1.5337 37 1 6.5445 3.5113 -1.5504 38 1 5.0398 4.2781 -2.1129 39 1 4.9408 -0.9571 0.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987172052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:30 Heat of formation + Delta-G solvation = 7.101044 kcal Electronic energy + Delta-G solvation = -21835.492228 eV Core-core repulsion = 18676.826579 eV Total energy + Delta-G solvation = -3158.665649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56460 -39.24270 -38.03569 -35.86673 -33.61007 -32.93598 -32.35691 -31.07517 -27.82519 -26.85333 -26.17377 -24.96559 -23.46403 -21.11467 -20.89413 -19.94958 -19.80121 -18.61377 -17.64426 -16.93803 -16.57830 -16.45335 -15.89042 -15.30662 -15.24405 -14.96801 -14.72069 -14.34501 -14.31730 -14.07967 -13.90857 -13.44693 -13.40435 -13.13904 -12.98319 -12.91907 -12.84535 -12.59993 -12.37839 -12.34695 -11.97444 -11.85059 -11.65537 -11.50081 -11.01729 -10.96671 -9.87485 -9.66894 -9.35628 -9.30916 -8.00778 -5.33216 -0.23804 0.54963 0.87141 0.93903 1.36345 1.37962 1.44483 1.99750 2.25063 2.47486 3.28418 3.46091 3.55051 3.66698 3.76207 3.96168 4.14495 4.20152 4.24739 4.31284 4.39108 4.47768 4.52570 4.64114 4.71217 4.80317 4.85177 4.92042 4.97369 5.04194 5.15406 5.17673 5.21150 5.33274 5.35724 5.41548 5.81332 6.23098 6.47741 7.05377 7.08849 7.83918 8.02481 9.20589 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.004561 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.703848 B = 6137.572617 C = 6648.418748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.197 4.197 3 C -0.149 4.149 4 C -0.175 4.175 5 C 0.586 3.414 6 O -0.583 6.583 7 N -0.603 5.603 8 C 0.100 3.900 9 C -0.149 4.149 10 C 0.169 3.831 11 H 0.077 0.923 12 N -0.740 5.740 13 C -0.221 4.221 14 H 0.068 0.932 15 C -0.054 4.054 16 N -0.980 5.980 17 Si 0.937 3.063 18 H -0.277 1.277 19 H -0.261 1.261 20 H -0.299 1.299 21 C 0.130 3.870 22 H 0.085 0.915 23 C -0.145 4.145 24 C -0.200 4.200 25 S 0.237 5.763 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.170 0.830 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.365 0.635 35 H 0.256 0.744 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -23.356 6.905 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.314 4.314 3 C -0.177 4.177 4 C -0.192 4.192 5 C 0.376 3.624 6 O -0.465 6.465 7 N -0.335 5.335 8 C -0.022 4.022 9 C -0.189 4.189 10 C 0.060 3.940 11 H 0.095 0.905 12 N -0.384 5.384 13 C -0.351 4.351 14 H 0.085 0.915 15 C -0.245 4.245 16 N -0.631 5.631 17 Si 0.766 3.234 18 H -0.203 1.203 19 H -0.186 1.186 20 H -0.226 1.226 21 C 0.026 3.974 22 H 0.103 0.897 23 C -0.203 4.203 24 C -0.339 4.339 25 S 0.504 5.496 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.187 0.813 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.200 0.800 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.676 -24.918 6.893 26.274 hybrid contribution 0.643 1.688 -1.334 2.246 sum -4.032 -23.231 5.559 24.225 Atomic orbital electron populations 1.20484 0.85311 1.04256 1.04207 1.24849 1.01969 0.95871 1.08739 1.21921 0.90331 1.01606 1.03799 1.20151 0.93790 0.92952 1.12354 1.17700 0.87626 0.81250 0.75858 1.90725 1.20844 1.82016 1.52944 1.48476 1.11981 1.04538 1.68524 1.22802 0.83524 0.95902 0.99969 1.23401 1.00607 0.95290 0.99614 1.21370 0.93720 0.91392 0.87542 0.90533 1.42824 1.79691 1.07808 1.08088 1.19025 1.34011 0.85973 0.96130 0.91451 1.25273 1.02297 0.96552 1.00414 1.69845 1.53032 1.12467 1.27771 0.85696 0.78529 0.78577 0.80625 1.20326 1.18587 1.22618 1.21856 0.92728 0.85284 0.97489 0.89675 1.21889 1.00406 1.01906 0.96110 1.25697 1.06120 0.97234 1.04857 1.82726 0.91404 1.07233 1.68252 0.89803 0.89147 0.89857 0.81332 0.87608 0.91461 0.89039 0.89974 0.79984 0.93448 0.91261 0.92814 0.93936 0.81122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.35 71.23 0.74 -0.15 16 2 C -0.20 -3.30 6.44 24.51 0.16 -3.14 16 3 C -0.15 -3.19 8.51 22.67 0.19 -2.99 16 4 C -0.17 -4.62 5.92 -19.87 -0.12 -4.74 16 5 C 0.59 19.18 7.54 86.59 0.65 19.84 16 6 O -0.58 -22.65 16.22 -4.13 -0.07 -22.72 16 7 N -0.60 -18.52 3.06 -792.17 -2.43 -20.95 16 8 C 0.10 2.60 4.95 86.85 0.43 3.03 16 9 C -0.15 -4.23 6.77 31.98 0.22 -4.01 16 10 C 0.17 5.90 3.47 46.18 0.16 6.06 16 11 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 12 N -0.74 -32.12 4.41 -317.32 -1.40 -33.52 16 13 C -0.22 -11.75 10.45 84.03 0.88 -10.87 16 14 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 15 C -0.05 -3.04 5.50 84.86 0.47 -2.57 16 16 N -0.98 -60.97 13.97 21.65 0.30 -60.67 16 17 Si 0.94 44.69 27.73 68.60 1.90 46.59 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.26 -11.60 6.52 99.48 0.65 -10.95 16 20 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 21 C 0.13 4.29 3.40 45.34 0.15 4.44 16 22 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 23 C -0.14 -5.15 8.12 71.98 0.58 -4.56 16 24 C -0.20 -4.52 10.53 67.30 0.71 -3.81 16 25 S 0.24 3.66 22.99 -56.49 -1.30 2.36 16 26 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.17 3.38 4.26 -2.91 -0.01 3.36 16 30 H 0.11 2.19 6.02 -2.39 -0.01 2.18 16 31 H 0.07 1.83 7.44 -2.39 -0.02 1.82 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.37 15.92 3.59 -92.70 -0.33 15.58 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 36 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 37 H 0.05 1.92 7.38 -2.39 -0.02 1.90 16 38 H 0.04 1.59 6.67 -2.38 -0.02 1.58 16 39 H 0.17 3.81 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -68.90 325.89 2.91 -65.98 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.68 Total: 26.42 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.22 Total: -3.50 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -3.52 Total: -115.14 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.07 Total: -22.72 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.30 Total: 2.36 kcal Total: -68.90 2.91 -65.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987172052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.085 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds