Wall clock time and date at job start Fri Apr 10 2020 20:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33811 * 124.52407 * 2 1 4 4 C 1.37477 * 115.10205 * 179.74834 * 3 2 1 5 5 C 1.36649 * 113.29154 * 0.49313 * 4 3 2 6 6 C 1.46581 * 125.45507 * 179.80211 * 5 4 3 7 7 O 1.21701 * 120.00145 * 353.76798 * 6 5 4 8 8 N 1.34777 * 119.99894 * 173.76581 * 6 5 4 9 9 C 1.47422 * 125.65248 * 354.40662 * 8 6 5 10 10 C 1.54910 * 104.83393 * 204.10646 * 9 8 6 11 11 H 1.09005 * 111.03650 * 81.07391 * 10 9 8 12 12 N 1.46498 * 110.99992 * 204.91512 * 10 9 8 13 13 C 1.36942 * 119.99819 * 266.91613 * 12 10 9 14 14 H 1.08001 * 119.99865 * 0.28135 * 13 12 10 15 15 C 1.38810 * 120.00079 * 180.28180 * 13 12 10 16 16 N 1.31619 * 119.99809 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00029 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47011 * 59.99998 * 17 15 13 19 19 H 1.48506 * 109.47207 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47251 * 299.99795 * 17 15 13 21 21 C 1.55157 * 101.57972 * 322.98602 * 10 9 8 22 22 C 1.47021 * 125.64425 * 174.37849 * 8 6 5 23 23 H 1.08999 * 109.88569 * 59.54530 * 22 8 6 24 24 C 1.53005 * 109.88511 * 298.37766 * 22 8 6 25 25 S 1.70613 * 124.51874 * 180.02562 * 2 1 3 26 26 H 1.08993 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46690 * 300.00378 * 1 2 3 28 28 H 1.08996 * 109.46956 * 60.00354 * 1 2 3 29 29 H 1.08003 * 122.45207 * 0.04048 * 3 2 1 30 30 H 1.07991 * 123.35514 * 180.29279 * 4 3 2 31 31 H 1.09002 * 110.36864 * 85.26013 * 9 8 6 32 32 H 1.09003 * 110.36178 * 322.94236 * 9 8 6 33 33 H 0.96998 * 120.00389 * 87.20110 * 12 10 9 34 34 H 0.97003 * 119.99800 * 180.02562 * 16 15 13 35 35 H 1.08997 * 110.71951 * 153.86569 * 21 10 9 36 36 H 1.08999 * 110.72276 * 276.96173 * 21 10 9 37 37 H 1.08994 * 109.46918 * 302.19553 * 24 22 8 38 38 H 1.09001 * 109.46803 * 62.19760 * 24 22 8 39 39 H 1.08999 * 109.47102 * 182.19151 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6217 0.8774 0.0055 5 6 3.9493 -0.4492 -0.0008 6 6 5.3123 -0.9884 -0.0014 7 8 6.2638 -0.2375 -0.1103 8 7 5.5118 -2.3159 0.1189 9 6 4.4654 -3.3226 0.3735 10 6 5.2111 -4.5138 1.0251 11 1 5.3750 -4.3385 2.0884 12 7 4.4869 -5.7686 0.8081 13 6 3.5919 -6.2134 1.7443 14 1 3.4167 -5.6367 2.6405 15 6 2.9100 -7.4053 1.5415 16 7 3.1232 -8.1077 0.4491 17 14 1.6898 -8.0122 2.8190 18 1 0.6108 -7.0062 2.9902 19 1 1.0998 -9.2983 2.3682 20 1 2.3881 -8.2144 4.1138 21 6 6.5532 -4.5045 0.2465 22 6 6.8093 -3.0000 0.0172 23 1 7.4897 -2.6194 0.7789 24 6 7.4059 -2.7800 -1.3745 25 16 2.4739 -1.4058 -0.0006 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8430 2.0964 0.0006 30 1 4.3551 1.6701 0.0108 31 1 4.0008 -3.6321 -0.5627 32 1 3.7151 -2.9251 1.0571 33 1 4.6443 -6.2866 0.0032 34 1 2.6464 -8.9405 0.3072 35 1 7.3500 -4.9442 0.8463 36 1 6.4520 -5.0304 -0.7029 37 1 6.7104 -3.1457 -2.1298 38 1 7.5840 -1.7158 -1.5293 39 1 8.3483 -3.3216 -1.4555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987842165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:40 Heat of formation + Delta-G solvation = 7.334348 kcal Electronic energy + Delta-G solvation = -21442.825227 eV Core-core repulsion = 18284.169695 eV Total energy + Delta-G solvation = -3158.655532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.97740 -38.13491 -36.99471 -34.25295 -32.44884 -31.50251 -31.26775 -28.50143 -27.15892 -25.56309 -24.07572 -23.49842 -22.18518 -20.54287 -19.80044 -18.28019 -17.72725 -17.31209 -16.15343 -15.78574 -15.43032 -14.63471 -14.48305 -14.10972 -13.87999 -13.69002 -13.35704 -13.19547 -13.01111 -12.73859 -12.48537 -12.32859 -12.22866 -11.97276 -11.79942 -11.72835 -11.26456 -11.09784 -10.93458 -10.69642 -10.41004 -10.35414 -10.09623 -9.85168 -9.76751 -9.07605 -8.70611 -8.49810 -8.27619 -7.16004 -5.90409 -3.21776 0.59638 1.58995 2.02061 2.43282 3.14237 3.36294 3.37328 3.42058 3.42312 4.45779 4.66162 4.75984 5.03522 5.11553 5.13671 5.22223 5.33294 5.37336 5.45696 5.51282 5.55325 5.62787 5.74407 5.77104 5.79859 5.96524 6.03015 6.05960 6.12017 6.19224 6.29511 6.40145 6.41433 6.41681 6.63208 6.76023 7.58227 7.72017 8.26216 8.31153 9.38991 9.91152 10.26564 11.31257 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.005585 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.470127 B = 5012.076327 C = 6861.603722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.223 4.223 3 C -0.163 4.163 4 C -0.058 4.058 5 C -0.272 4.272 6 C 0.603 3.397 7 O -0.544 6.544 8 N -0.607 5.607 9 C 0.060 3.940 10 C 0.178 3.822 11 H 0.071 0.929 12 N -0.709 5.709 13 C -0.252 4.252 14 H 0.073 0.927 15 C -0.005 4.005 16 N -0.928 5.928 17 Si 0.907 3.093 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.284 1.284 21 C -0.137 4.137 22 C 0.140 3.860 23 H 0.075 0.925 24 C -0.160 4.160 25 S 0.251 5.749 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.388 0.612 34 H 0.258 0.742 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 14.239 -2.289 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.343 4.343 3 C -0.193 4.193 4 C -0.092 4.092 5 C -0.392 4.392 6 C 0.392 3.608 7 O -0.424 6.424 8 N -0.340 5.340 9 C -0.067 4.067 10 C 0.065 3.935 11 H 0.089 0.911 12 N -0.348 5.348 13 C -0.383 4.383 14 H 0.091 0.909 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.738 3.262 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.211 1.211 21 C -0.176 4.176 22 C 0.037 3.963 23 H 0.093 0.907 24 C -0.219 4.219 25 S 0.520 5.480 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.223 0.777 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.364 13.055 -2.214 13.246 hybrid contribution -0.565 1.121 0.368 1.308 sum -0.929 14.175 -1.846 14.325 Atomic orbital electron populations 1.20355 0.87822 1.03186 1.02896 1.24764 1.02004 1.00082 1.07429 1.19830 0.92594 0.99340 1.07584 1.20626 0.96036 0.94982 0.97545 1.24599 0.97192 0.98134 1.19285 1.16598 0.86785 0.80761 0.76689 1.90770 1.42188 1.57544 1.51919 1.48457 1.10308 1.05192 1.70019 1.23730 0.91044 0.90575 1.01381 1.21242 0.89159 0.86061 0.97060 0.91145 1.42319 1.47690 1.20425 1.24394 1.19213 1.15563 1.03747 0.99764 0.90938 1.24760 1.00327 0.97488 0.97646 1.69648 1.45307 1.16185 1.26386 0.86275 0.81096 0.78009 0.80832 1.21086 1.21595 1.21084 1.23064 0.99499 0.93104 1.01978 1.21527 0.84627 0.92444 0.97681 0.90706 1.22126 1.00769 1.02659 0.96301 1.84097 0.93040 1.04795 1.66060 0.91190 0.90571 0.90584 0.84538 0.83456 0.90658 0.90734 0.77747 0.93214 0.90064 0.90225 0.92452 0.91767 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.33 36.01 0.37 -0.40 16 2 C -0.22 -2.69 6.28 -35.86 -0.23 -2.92 16 3 C -0.16 -1.93 9.99 -41.41 -0.41 -2.35 16 4 C -0.06 -0.80 10.02 -40.43 -0.41 -1.20 16 5 C -0.27 -4.20 6.34 -36.79 -0.23 -4.43 16 6 C 0.60 10.46 7.55 -12.90 -0.10 10.36 16 7 O -0.54 -10.54 16.11 5.19 0.08 -10.45 16 8 N -0.61 -9.98 3.06 -164.57 -0.50 -10.48 16 9 C 0.06 1.03 4.97 -2.53 -0.01 1.01 16 10 C 0.18 3.27 3.71 -65.78 -0.24 3.02 16 11 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 12 N -0.71 -16.23 5.24 -51.35 -0.27 -16.50 16 13 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 16 N -0.93 -26.40 13.06 55.49 0.72 -25.67 16 17 Si 0.91 21.19 29.55 -169.99 -5.02 16.16 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.14 -2.11 6.12 -24.89 -0.15 -2.26 16 22 C 0.14 2.11 3.43 -66.95 -0.23 1.88 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 C -0.16 -2.21 9.10 37.16 0.34 -1.87 16 25 S 0.25 3.51 18.60 -107.50 -2.00 1.51 16 26 H 0.07 0.64 8.11 -51.93 -0.42 0.21 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 32 H 0.07 1.28 5.75 -38.88 -0.22 1.05 16 33 H 0.39 9.45 7.76 -40.82 -0.32 9.13 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.23 7.72 -51.93 -0.40 0.83 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.97 7.09 -51.93 -0.37 0.60 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -29.52 333.84 -9.00 -38.51 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.49 Total: 7.91 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.55 Total: -6.02 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.05 Total: -52.66 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.00 Total: 1.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.52 -9.00 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987842165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.849 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds