Wall clock time and date at job start Fri Apr 10 2020 20:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33818 * 124.52073 * 2 1 4 4 C 1.37478 * 115.09735 * 179.71149 * 3 2 1 5 5 C 1.36641 * 113.29808 * 0.49521 * 4 3 2 6 6 C 1.46583 * 125.45605 * 179.80410 * 5 4 3 7 7 O 1.21699 * 120.00482 * 353.76511 * 6 5 4 8 8 N 1.34777 * 119.99803 * 173.76830 * 6 5 4 9 9 C 1.47427 * 125.64948 * 354.43351 * 8 6 5 10 10 C 1.54916 * 104.83151 * 204.08218 * 9 8 6 11 11 H 1.09002 * 111.03413 * 204.90231 * 10 9 8 12 12 N 1.46498 * 111.00438 * 81.06253 * 10 9 8 13 13 C 1.36932 * 120.00149 * 92.80482 * 12 10 9 14 14 H 1.08004 * 119.99672 * 0.02562 * 13 12 10 15 15 C 1.38808 * 119.99901 * 180.27381 * 13 12 10 16 16 N 1.31615 * 120.00156 * 359.72326 * 15 13 12 17 17 Si 1.86804 * 119.99991 * 179.72415 * 15 13 12 18 18 H 1.48506 * 109.46950 * 59.99814 * 17 15 13 19 19 H 1.48499 * 109.47358 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47175 * 299.99973 * 17 15 13 21 21 C 1.55162 * 101.58023 * 322.98672 * 10 9 8 22 22 C 1.47022 * 125.65057 * 174.37299 * 8 6 5 23 23 H 1.09004 * 109.88035 * 59.56767 * 22 8 6 24 24 C 1.53005 * 110.01092 * 298.47921 * 22 8 6 25 25 S 1.70612 * 124.52298 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.46846 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46936 * 299.99316 * 1 2 3 28 28 H 1.08995 * 109.47502 * 59.99023 * 1 2 3 29 29 H 1.07997 * 122.45295 * 0.02562 * 3 2 1 30 30 H 1.08004 * 123.34709 * 180.29904 * 4 3 2 31 31 H 1.08997 * 110.37178 * 85.24409 * 9 8 6 32 32 H 1.09003 * 110.36510 * 322.91658 * 9 8 6 33 33 H 0.97000 * 119.99570 * 272.80441 * 12 10 9 34 34 H 0.97000 * 120.00260 * 180.02562 * 16 15 13 35 35 H 1.08994 * 110.71709 * 153.86464 * 21 10 9 36 36 H 1.09003 * 110.71896 * 277.14301 * 21 10 9 37 37 H 1.08997 * 109.46883 * 302.10808 * 24 22 8 38 38 H 1.09004 * 109.47106 * 62.11086 * 24 22 8 39 39 H 1.09003 * 109.46929 * 182.10957 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6216 0.8775 0.0063 5 6 3.9493 -0.4490 0.0006 6 6 5.3123 -0.9882 0.0010 7 8 6.2639 -0.2372 -0.1077 8 7 5.5119 -2.3156 0.1217 9 6 4.4652 -3.3223 0.3755 10 6 5.2105 -4.5136 1.0275 11 1 4.6721 -5.4475 0.8661 12 7 5.4296 -4.2772 2.4566 13 6 4.5206 -4.7337 3.3734 14 1 3.6424 -5.2684 3.0429 15 6 4.7254 -4.5047 4.7270 16 7 5.7959 -3.8536 5.1298 17 14 3.4814 -5.1207 5.9772 18 1 3.3683 -6.5980 5.8762 19 1 3.9288 -4.7513 7.3441 20 1 2.1586 -4.5032 5.7049 21 6 6.5532 -4.5042 0.2500 22 6 6.8093 -2.9997 0.0209 23 1 7.4893 -2.6192 0.7831 24 6 7.4105 -2.7800 -1.3688 25 16 2.4739 -1.4057 0.0006 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.8429 2.0965 0.0004 30 1 4.3550 1.6703 0.0118 31 1 4.0014 -3.6318 -0.5611 32 1 3.7144 -2.9249 1.0585 33 1 6.2186 -3.7973 2.7534 34 1 5.9392 -3.6939 6.0758 35 1 7.3495 -4.9440 0.8503 36 1 6.4518 -5.0273 -0.7010 37 1 6.7178 -3.1463 -2.1264 38 1 7.5887 -1.7158 -1.5235 39 1 8.3535 -3.3213 -1.4465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987842168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:42 Heat of formation + Delta-G solvation = 8.281882 kcal Electronic energy + Delta-G solvation = -21744.745061 eV Core-core repulsion = 18586.130617 eV Total energy + Delta-G solvation = -3158.614444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.86923 -38.06787 -36.90486 -34.00676 -32.36360 -31.40566 -31.19796 -28.50032 -27.08967 -25.57320 -23.88667 -23.52278 -22.29058 -20.51085 -19.55404 -18.17865 -17.63212 -17.23967 -16.09072 -15.72121 -15.21659 -14.69532 -14.31656 -14.11214 -13.79886 -13.63202 -13.37717 -13.12999 -12.96310 -12.76933 -12.35017 -12.23758 -12.03445 -11.87819 -11.74336 -11.68496 -11.17022 -11.13944 -10.88840 -10.71072 -10.37951 -10.31610 -10.06235 -9.75145 -9.65427 -9.06618 -8.59014 -8.40182 -8.15502 -7.07957 -5.84620 -3.15720 0.69518 1.65698 2.07836 2.54268 3.28913 3.38766 3.43246 3.45005 3.54271 4.50782 4.74017 4.81371 5.08786 5.14959 5.20018 5.31734 5.39534 5.41831 5.47071 5.56275 5.62770 5.65710 5.75578 5.82767 5.85072 5.94476 6.08082 6.13136 6.17737 6.27764 6.38368 6.39896 6.49927 6.54775 6.66723 6.78790 7.60954 7.87623 8.32130 8.47251 9.44016 9.98422 10.33069 11.37090 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.006362 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.357973 B = 4400.211126 C = 5930.558982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.225 4.225 3 C -0.159 4.159 4 C -0.061 4.061 5 C -0.259 4.259 6 C 0.604 3.396 7 O -0.543 6.543 8 N -0.595 5.595 9 C 0.055 3.945 10 C 0.174 3.826 11 H 0.078 0.922 12 N -0.710 5.710 13 C -0.251 4.251 14 H 0.073 0.927 15 C -0.006 4.006 16 N -0.927 5.927 17 Si 0.907 3.093 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.139 4.139 22 C 0.140 3.860 23 H 0.076 0.924 24 C -0.159 4.159 25 S 0.236 5.764 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.387 0.613 34 H 0.258 0.742 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 3.740 -13.873 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.345 4.345 3 C -0.190 4.190 4 C -0.094 4.094 5 C -0.379 4.379 6 C 0.393 3.607 7 O -0.423 6.423 8 N -0.327 5.327 9 C -0.073 4.073 10 C 0.061 3.939 11 H 0.096 0.904 12 N -0.349 5.349 13 C -0.382 4.382 14 H 0.091 0.909 15 C -0.203 4.203 16 N -0.574 5.574 17 Si 0.737 3.263 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.178 4.178 22 C 0.037 3.963 23 H 0.094 0.906 24 C -0.217 4.217 25 S 0.506 5.494 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.221 0.779 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.843 2.577 -13.789 15.608 hybrid contribution -0.259 1.634 0.975 1.920 sum -7.103 4.211 -12.815 15.245 Atomic orbital electron populations 1.20327 0.87913 1.02907 1.02870 1.24665 1.01790 0.99926 1.08085 1.19822 0.92606 0.99323 1.07254 1.20637 0.96063 0.95081 0.97649 1.24559 0.96992 0.97955 1.18421 1.16529 0.86716 0.80774 0.76705 1.90769 1.42128 1.57445 1.51997 1.48232 1.09769 1.05088 1.69651 1.23650 0.91766 0.92354 0.99545 1.21289 0.92693 0.94238 0.85694 0.90445 1.42346 1.27148 1.66826 0.98560 1.19185 1.01991 1.29941 0.87082 0.90920 1.24773 0.97826 1.00624 0.97123 1.69655 1.27521 1.45142 1.15054 0.86287 0.80678 0.78443 0.80861 1.21092 1.21660 1.21151 1.23101 1.00133 0.93793 1.00749 1.21488 0.84970 0.92533 0.97342 0.90553 1.22129 1.00505 1.02786 0.96301 1.83567 0.93488 1.05776 1.66606 0.91424 0.90577 0.90708 0.84548 0.83407 0.92132 0.89538 0.77917 0.93257 0.89532 0.90614 0.92795 0.91757 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.33 36.01 0.37 -0.39 16 2 C -0.23 -2.86 6.28 -35.86 -0.23 -3.09 16 3 C -0.16 -2.08 10.00 -41.41 -0.41 -2.49 16 4 C -0.06 -0.93 10.02 -40.44 -0.41 -1.34 16 5 C -0.26 -4.41 6.34 -36.80 -0.23 -4.64 16 6 C 0.60 11.70 7.56 -12.90 -0.10 11.60 16 7 O -0.54 -11.77 16.12 5.19 0.08 -11.68 16 8 N -0.60 -10.70 3.07 -164.57 -0.51 -11.20 16 9 C 0.05 0.92 4.97 -2.52 -0.01 0.91 16 10 C 0.17 3.15 3.72 -65.78 -0.24 2.91 16 11 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 12 N -0.71 -16.81 5.23 -51.35 -0.27 -17.07 16 13 C -0.25 -6.59 9.96 -15.06 -0.15 -6.74 16 14 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 17 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.14 -2.11 6.07 -24.89 -0.15 -2.26 16 22 C 0.14 2.31 3.42 -66.95 -0.23 2.08 16 23 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 24 C -0.16 -2.24 9.11 37.16 0.34 -1.90 16 25 S 0.24 3.37 18.60 -107.50 -2.00 1.37 16 26 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 27 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.06 0.86 7.95 -51.93 -0.41 0.44 16 32 H 0.09 1.62 5.75 -38.84 -0.22 1.39 16 33 H 0.39 10.08 7.86 -40.82 -0.32 9.76 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.02 7.10 -51.93 -0.37 0.65 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -31.50 334.03 -9.01 -40.51 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.50 Total: 8.79 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.55 Total: -5.62 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.05 Total: -55.11 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.00 Total: 1.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.50 -9.01 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987842168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.789 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds