Wall clock time and date at job start Fri Apr 10 2020 20:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33818 * 124.52073 * 2 1 4 4 C 1.37478 * 115.09735 * 179.71149 * 3 2 1 5 5 C 1.36641 * 113.29808 * 0.49521 * 4 3 2 6 6 C 1.46583 * 125.45605 * 179.80410 * 5 4 3 7 7 O 1.21699 * 120.00482 * 353.76511 * 6 5 4 8 8 N 1.34777 * 119.99803 * 173.76830 * 6 5 4 9 9 C 1.47427 * 125.64948 * 354.43351 * 8 6 5 10 10 C 1.54916 * 104.83151 * 204.08218 * 9 8 6 11 11 H 1.09002 * 111.03413 * 204.90231 * 10 9 8 12 12 N 1.46498 * 111.00438 * 81.06253 * 10 9 8 13 13 C 1.36932 * 120.00149 * 92.80482 * 12 10 9 14 14 H 1.08004 * 119.99672 * 0.02562 * 13 12 10 15 15 C 1.38808 * 119.99901 * 180.27381 * 13 12 10 16 16 N 1.31615 * 120.00156 * 359.72326 * 15 13 12 17 17 Si 1.86804 * 119.99991 * 179.72415 * 15 13 12 18 18 H 1.48506 * 109.46950 * 59.99814 * 17 15 13 19 19 H 1.48499 * 109.47358 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47175 * 299.99973 * 17 15 13 21 21 C 1.55162 * 101.58023 * 322.98672 * 10 9 8 22 22 C 1.47022 * 125.65057 * 174.37299 * 8 6 5 23 23 H 1.09004 * 109.88035 * 59.56767 * 22 8 6 24 24 C 1.53005 * 110.01092 * 298.47921 * 22 8 6 25 25 S 1.70612 * 124.52298 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.46846 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46936 * 299.99316 * 1 2 3 28 28 H 1.08995 * 109.47502 * 59.99023 * 1 2 3 29 29 H 1.07997 * 122.45295 * 0.02562 * 3 2 1 30 30 H 1.08004 * 123.34709 * 180.29904 * 4 3 2 31 31 H 1.08997 * 110.37178 * 85.24409 * 9 8 6 32 32 H 1.09003 * 110.36510 * 322.91658 * 9 8 6 33 33 H 0.97000 * 119.99570 * 272.80441 * 12 10 9 34 34 H 0.97000 * 120.00260 * 180.02562 * 16 15 13 35 35 H 1.08994 * 110.71709 * 153.86464 * 21 10 9 36 36 H 1.09003 * 110.71896 * 277.14301 * 21 10 9 37 37 H 1.08997 * 109.46883 * 302.10808 * 24 22 8 38 38 H 1.09004 * 109.47106 * 62.11086 * 24 22 8 39 39 H 1.09003 * 109.46929 * 182.10957 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6216 0.8775 0.0063 5 6 3.9493 -0.4490 0.0006 6 6 5.3123 -0.9882 0.0010 7 8 6.2639 -0.2372 -0.1077 8 7 5.5119 -2.3156 0.1217 9 6 4.4652 -3.3223 0.3755 10 6 5.2105 -4.5136 1.0275 11 1 4.6721 -5.4475 0.8661 12 7 5.4296 -4.2772 2.4566 13 6 4.5206 -4.7337 3.3734 14 1 3.6424 -5.2684 3.0429 15 6 4.7254 -4.5047 4.7270 16 7 5.7959 -3.8536 5.1298 17 14 3.4814 -5.1207 5.9772 18 1 3.3683 -6.5980 5.8762 19 1 3.9288 -4.7513 7.3441 20 1 2.1586 -4.5032 5.7049 21 6 6.5532 -4.5042 0.2500 22 6 6.8093 -2.9997 0.0209 23 1 7.4893 -2.6192 0.7831 24 6 7.4105 -2.7800 -1.3688 25 16 2.4739 -1.4057 0.0006 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.8429 2.0965 0.0004 30 1 4.3550 1.6703 0.0118 31 1 4.0014 -3.6318 -0.5611 32 1 3.7144 -2.9249 1.0585 33 1 6.2186 -3.7973 2.7534 34 1 5.9392 -3.6939 6.0758 35 1 7.3495 -4.9440 0.8503 36 1 6.4518 -5.0273 -0.7010 37 1 6.7178 -3.1463 -2.1264 38 1 7.5887 -1.7158 -1.5235 39 1 8.3535 -3.3213 -1.4465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987842168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:42 Heat of formation + Delta-G solvation = -11.482354 kcal Electronic energy + Delta-G solvation = -21745.602103 eV Core-core repulsion = 18586.130617 eV Total energy + Delta-G solvation = -3159.471486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27121 -39.30012 -38.25051 -35.81460 -33.57306 -33.15028 -32.33187 -30.17939 -28.17754 -26.85161 -25.73601 -24.71132 -23.53950 -21.91534 -20.86303 -19.38937 -19.31423 -18.82020 -17.55765 -16.87122 -16.58658 -16.43815 -15.61811 -15.52152 -15.24246 -14.95622 -14.81512 -14.38793 -14.17446 -13.98712 -13.58525 -13.35731 -13.29101 -13.18560 -12.91634 -12.84509 -12.71287 -12.69686 -12.42073 -12.26211 -12.15305 -11.65129 -11.56064 -11.51082 -11.13418 -10.93888 -9.90231 -9.52376 -9.42192 -8.99777 -7.93044 -5.22780 -0.47324 0.52391 0.97630 1.39297 1.48837 1.51339 1.57128 1.93829 2.18691 2.56942 3.36688 3.45391 3.81350 3.86224 3.89685 3.94971 4.09649 4.29284 4.34567 4.40245 4.43359 4.63397 4.66738 4.69013 4.71430 4.75345 4.89240 5.03139 5.08525 5.09530 5.15142 5.16911 5.22778 5.33187 5.44314 5.48550 5.55548 6.26983 6.46940 7.03754 7.33740 8.07598 8.30171 9.30261 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.006362 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.357973 B = 4400.211126 C = 5930.558982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.210 4.210 3 C -0.169 4.169 4 C -0.060 4.060 5 C -0.306 4.306 6 C 0.593 3.407 7 O -0.583 6.583 8 N -0.598 5.598 9 C 0.062 3.938 10 C 0.162 3.838 11 H 0.098 0.902 12 N -0.725 5.725 13 C -0.237 4.237 14 H 0.089 0.911 15 C -0.076 4.076 16 N -0.973 5.973 17 Si 0.969 3.031 18 H -0.273 1.273 19 H -0.304 1.304 20 H -0.277 1.277 21 C -0.122 4.122 22 C 0.132 3.868 23 H 0.041 0.959 24 C -0.147 4.147 25 S 0.248 5.752 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.165 0.835 30 H 0.144 0.856 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.369 0.631 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 2.727 -15.652 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.330 4.330 3 C -0.198 4.198 4 C -0.095 4.095 5 C -0.426 4.426 6 C 0.384 3.616 7 O -0.467 6.467 8 N -0.330 5.330 9 C -0.065 4.065 10 C 0.051 3.949 11 H 0.116 0.884 12 N -0.363 5.363 13 C -0.369 4.369 14 H 0.107 0.893 15 C -0.268 4.268 16 N -0.623 5.623 17 Si 0.798 3.202 18 H -0.198 1.198 19 H -0.231 1.231 20 H -0.203 1.203 21 C -0.160 4.160 22 C 0.029 3.971 23 H 0.059 0.941 24 C -0.205 4.205 25 S 0.517 5.483 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.183 0.817 30 H 0.162 0.838 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.601 1.511 -15.631 18.406 hybrid contribution 0.514 1.984 1.427 2.498 sum -9.087 3.495 -14.204 17.220 Atomic orbital electron populations 1.20513 0.85070 1.04117 1.04528 1.25151 1.03548 0.98828 1.05484 1.20046 0.91438 1.00948 1.07395 1.20883 0.97416 0.94582 0.96606 1.24524 0.97060 0.99225 1.21748 1.16980 0.87486 0.80983 0.76180 1.90723 1.43609 1.58308 1.54050 1.48360 1.10491 1.05054 1.69051 1.23570 0.91040 0.91107 1.00735 1.21643 0.94834 0.95282 0.83114 0.88433 1.42555 1.26191 1.66689 1.00838 1.19675 1.02026 1.27689 0.87505 0.89347 1.25570 0.99775 1.02147 0.99320 1.69837 1.29948 1.48008 1.14517 0.85277 0.78653 0.78409 0.77839 1.19841 1.23090 1.20269 1.23039 0.98143 0.92840 1.02027 1.21607 0.84233 0.93290 0.97938 0.94070 1.22026 1.01916 1.01638 0.94890 1.83315 0.92183 1.06274 1.66499 0.90511 0.89351 0.88378 0.81713 0.83820 0.88456 0.91253 0.79948 0.94316 0.90163 0.86466 0.90953 0.94195 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.33 71.24 0.74 -0.50 16 2 C -0.21 -4.78 6.28 24.68 0.15 -4.62 16 3 C -0.17 -4.07 10.00 21.09 0.21 -3.86 16 4 C -0.06 -1.85 10.02 21.72 0.22 -1.63 16 5 C -0.31 -10.49 6.34 24.07 0.15 -10.33 16 6 C 0.59 23.72 7.56 86.42 0.65 24.37 16 7 O -0.58 -26.69 16.12 -4.35 -0.07 -26.76 16 8 N -0.60 -21.58 3.07 -792.79 -2.43 -24.01 16 9 C 0.06 2.00 4.97 86.86 0.43 2.44 16 10 C 0.16 5.59 3.72 46.39 0.17 5.76 16 11 H 0.10 3.01 8.09 -2.39 -0.02 2.99 16 12 N -0.73 -34.41 5.23 -316.36 -1.66 -36.07 16 13 C -0.24 -12.34 9.96 84.03 0.84 -11.50 16 14 H 0.09 4.23 7.83 -2.91 -0.02 4.20 16 15 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 16 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 17 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 21 C -0.12 -3.47 6.07 31.78 0.19 -3.28 16 22 C 0.13 4.38 3.42 45.34 0.15 4.53 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 C -0.15 -3.98 9.11 71.98 0.66 -3.32 16 25 S 0.25 6.67 18.60 -56.49 -1.05 5.61 16 26 H 0.08 1.02 8.11 -2.39 -0.02 1.00 16 27 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.10 2.45 7.95 -2.39 -0.02 2.43 16 32 H 0.07 2.53 5.75 -10.71 -0.06 2.47 16 33 H 0.37 19.91 7.86 -92.71 -0.73 19.18 16 34 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.12 2.41 7.85 -2.39 -0.02 2.39 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.28 7.10 -2.39 -0.02 1.26 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.38 334.03 2.42 -68.97 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.28 Total: 30.50 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.04 Total: -5.74 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -3.81 Total: -119.51 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.07 Total: -26.76 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 6.67 SS G_CDS: -1.05 Total: 5.61 kcal Total: -71.38 2.42 -68.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987842168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.485 kcal (2) G-P(sol) polarization free energy of solvation -71.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds