Wall clock time and date at job start Fri Apr 10 2020 20:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70437 * 124.59252 * 2 1 4 4 C 1.75508 * 92.44626 * 180.22055 * 3 2 1 5 5 C 1.32770 * 110.57436 * 359.80551 * 4 3 2 6 6 C 1.36009 * 124.58833 * 179.85738 * 2 1 3 7 7 C 1.47189 * 123.46444 * 359.97438 * 6 2 1 8 8 O 1.21647 * 119.99753 * 5.88885 * 7 6 2 9 9 N 1.34774 * 120.00335 * 185.89702 * 7 6 2 10 10 C 1.47020 * 125.64410 * 355.20715 * 9 7 6 11 11 C 1.54325 * 107.26779 * 178.98110 * 10 9 7 12 12 H 1.09000 * 110.72410 * 96.35169 * 11 10 9 13 13 N 1.46501 * 110.72110 * 219.44592 * 11 10 9 14 14 C 1.36934 * 120.00046 * 273.55104 * 13 11 10 15 15 H 1.08007 * 119.99828 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00568 * 179.72439 * 14 13 11 17 17 N 1.31621 * 119.99583 * 0.27073 * 16 14 13 18 18 Si 1.86796 * 120.00507 * 180.27032 * 16 14 13 19 19 H 1.48497 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.46991 * 119.99813 * 18 16 14 21 21 H 1.48503 * 109.47260 * 239.99599 * 18 16 14 22 22 C 1.55158 * 102.94391 * 337.80827 * 11 10 9 23 23 C 1.47422 * 125.64936 * 175.25585 * 9 7 6 24 24 H 1.08998 * 110.36780 * 85.24734 * 23 9 7 25 25 C 1.53000 * 110.36755 * 322.92728 * 23 9 7 26 26 H 1.09003 * 109.47449 * 270.14055 * 1 2 3 27 27 H 1.09002 * 109.46951 * 30.13968 * 1 2 3 28 28 H 1.09004 * 109.47317 * 150.13798 * 1 2 3 29 29 H 1.07994 * 124.71498 * 179.79928 * 4 3 2 30 30 H 1.07997 * 123.45994 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.88215 * 59.56467 * 10 9 7 32 32 H 1.08998 * 110.01580 * 298.46593 * 10 9 7 33 33 H 0.97000 * 120.00289 * 93.54331 * 13 11 10 34 34 H 0.97006 * 120.00253 * 180.02562 * 17 16 14 35 35 H 1.08997 * 111.00339 * 153.57978 * 22 11 10 36 36 H 1.09005 * 111.00225 * 277.42968 * 22 11 10 37 37 H 1.08996 * 109.47287 * 61.45179 * 25 23 9 38 38 H 1.09000 * 109.47278 * 181.45568 * 25 23 9 39 39 H 1.09003 * 109.47063 * 301.45867 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4692 -0.0067 5 6 3.6943 -0.8315 -0.0045 6 6 2.2791 -1.1197 0.0028 7 6 1.7290 -2.4849 0.0067 8 8 0.5296 -2.6576 -0.1004 9 7 2.5540 -3.5436 0.1292 10 6 4.0226 -3.4856 0.1666 11 6 4.5338 -4.9310 0.3423 12 1 4.7980 -5.3665 -0.6213 13 7 5.6776 -4.9687 1.2570 14 6 6.9441 -4.7642 0.7782 15 1 7.0999 -4.5756 -0.2738 16 6 8.0274 -4.7942 1.6457 17 7 7.8376 -5.0246 2.9276 18 14 9.7543 -4.5078 0.9938 19 1 9.6977 -4.2736 -0.4715 20 1 10.3454 -3.3210 1.6629 21 1 10.5927 -5.7016 1.2718 22 6 3.3116 -5.6591 0.9616 23 6 2.1333 -4.9516 0.2469 24 1 1.9742 -5.3838 -0.7410 25 6 0.8594 -5.0583 1.0876 26 1 -0.3634 0.0025 1.0277 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3634 -0.8912 -0.5117 29 1 4.9537 0.8936 -0.0121 30 1 4.4576 -1.5956 -0.0082 31 1 4.3480 -2.8725 1.0071 32 1 4.4033 -3.0685 -0.7656 33 1 5.5378 -5.1384 2.2017 34 1 8.5946 -5.0452 3.5340 35 1 3.3297 -6.7230 0.7253 36 1 3.2670 -5.5004 2.0391 37 1 0.0546 -4.5090 0.5990 38 1 0.5761 -6.1061 1.1867 39 1 1.0398 -4.6355 2.0759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988798722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:49 Heat of formation + Delta-G solvation = 22.100824 kcal Electronic energy + Delta-G solvation = -21752.527667 eV Core-core repulsion = 18594.512457 eV Total energy + Delta-G solvation = -3158.015210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24101 -37.77695 -36.64496 -34.22852 -32.15003 -31.45290 -31.40829 -28.49558 -27.05246 -25.55268 -24.08322 -23.70244 -21.76917 -20.42964 -20.05003 -18.52004 -17.35112 -17.03220 -16.20754 -15.69639 -15.36430 -14.71966 -14.41337 -14.07532 -13.75797 -13.55549 -13.41945 -13.17376 -12.82658 -12.75514 -12.53845 -12.11709 -12.06505 -11.89050 -11.64677 -11.54025 -11.31819 -11.08859 -10.96857 -10.68600 -10.49399 -10.33487 -10.04763 -9.79682 -9.34280 -9.01935 -8.77193 -8.45758 -8.22521 -7.13797 -5.89478 -3.20721 0.85384 1.54191 1.93219 2.14054 3.31309 3.35850 3.42223 3.44088 3.54139 4.47874 4.73472 4.75790 5.05154 5.09449 5.21188 5.23906 5.40681 5.46654 5.54361 5.57527 5.63647 5.70410 5.82203 5.85586 5.91878 6.08083 6.10164 6.14049 6.16998 6.26360 6.36187 6.41125 6.46830 6.48374 6.71299 6.84119 7.59223 7.83797 8.27693 8.43479 9.40022 9.93759 10.28686 11.32445 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.004993 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.608840 B = 5606.597146 C = 7178.878814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.143 4.143 3 S 0.152 5.848 4 C -0.234 4.234 5 C -0.121 4.121 6 C -0.167 4.167 7 C 0.594 3.406 8 O -0.548 6.548 9 N -0.601 5.601 10 C 0.066 3.934 11 C 0.170 3.830 12 H 0.066 0.934 13 N -0.713 5.713 14 C -0.250 4.250 15 H 0.073 0.927 16 C -0.007 4.007 17 N -0.928 5.928 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.290 1.290 22 C -0.136 4.136 23 C 0.138 3.862 24 H 0.073 0.927 25 C -0.163 4.163 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 8.415 -5.766 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.264 4.264 3 S 0.417 5.583 4 C -0.369 4.369 5 C -0.149 4.149 6 C -0.184 4.184 7 C 0.383 3.617 8 O -0.430 6.430 9 N -0.334 5.334 10 C -0.060 4.060 11 C 0.058 3.942 12 H 0.084 0.916 13 N -0.353 5.353 14 C -0.381 4.381 15 H 0.091 0.909 16 C -0.204 4.204 17 N -0.575 5.575 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.217 1.217 22 C -0.175 4.175 23 C 0.035 3.965 24 H 0.091 0.909 25 C -0.221 4.221 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.185 0.815 30 H 0.193 0.807 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.144 9.932 -5.906 17.501 hybrid contribution 1.607 -1.276 0.104 2.055 sum -11.537 8.656 -5.801 15.546 Atomic orbital electron populations 1.20633 0.86994 1.04310 1.03312 1.24446 1.01523 0.96698 1.03703 1.82881 0.95962 1.08129 1.71279 1.25457 1.01802 0.97144 1.12469 1.22387 0.95707 0.97354 0.99473 1.20141 0.92877 0.93578 1.11761 1.17198 0.85174 0.82981 0.76302 1.90614 1.14665 1.85536 1.52147 1.48409 1.07728 1.06133 1.71153 1.23696 0.78003 1.03081 1.01194 1.21231 0.87438 0.90677 0.94889 0.91589 1.42394 1.01079 1.84825 1.07035 1.19291 0.83547 1.41808 0.93455 0.90869 1.24766 0.98067 1.02111 0.95432 1.69672 1.30218 1.55486 1.02162 0.86137 0.84714 0.77462 0.77955 1.20427 1.21763 1.21747 1.23143 0.93931 0.99680 1.00733 1.21850 0.95055 0.80698 0.98877 0.90901 1.22139 0.98121 1.01769 1.00057 0.90605 0.91860 0.87550 0.81464 0.80722 0.90102 0.91831 0.77822 0.93351 0.90086 0.90455 0.89870 0.92236 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.68 36.01 0.35 -0.78 16 2 C -0.14 -1.96 6.34 -35.11 -0.22 -2.18 16 3 S 0.15 1.73 22.97 -107.50 -2.47 -0.74 16 4 C -0.23 -2.97 11.12 28.86 0.32 -2.65 16 5 C -0.12 -1.78 8.85 -39.02 -0.35 -2.13 16 6 C -0.17 -2.60 5.96 -104.63 -0.62 -3.22 16 7 C 0.59 10.04 7.54 -12.63 -0.10 9.95 16 8 O -0.55 -9.77 11.85 5.24 0.06 -9.71 16 9 N -0.60 -9.78 3.24 -164.39 -0.53 -10.31 16 10 C 0.07 1.12 4.66 -3.06 -0.01 1.10 16 11 C 0.17 3.10 3.59 -66.09 -0.24 2.86 16 12 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 13 N -0.71 -16.46 5.18 -51.65 -0.27 -16.73 16 14 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 15 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 17 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 18 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.14 -2.12 6.11 -24.58 -0.15 -2.27 16 23 C 0.14 2.05 3.75 -66.42 -0.25 1.80 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 C -0.16 -2.29 8.76 37.16 0.33 -1.97 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.11 1.46 5.82 -51.93 -0.30 1.16 16 29 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.18 2.67 3.80 -52.49 -0.20 2.47 16 31 H 0.08 1.49 6.52 -51.93 -0.34 1.15 16 32 H 0.06 1.03 6.92 -51.93 -0.36 0.67 16 33 H 0.39 9.64 7.71 -40.82 -0.31 9.32 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 37 H 0.08 1.28 5.92 -51.93 -0.31 0.97 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -29.06 324.81 -8.96 -38.02 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.16 Total: 10.65 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.19 Total: -6.35 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.08 Total: -53.03 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.06 Total: -9.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.47 Total: -0.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.06 -8.96 -38.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988798722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.121 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds