Wall clock time and date at job start Fri Apr 10 2020 20:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70437 * 124.59252 * 2 1 4 4 C 1.75508 * 92.44626 * 180.22055 * 3 2 1 5 5 C 1.32770 * 110.57436 * 359.80551 * 4 3 2 6 6 C 1.36009 * 124.58833 * 179.85738 * 2 1 3 7 7 C 1.47189 * 123.46444 * 359.97438 * 6 2 1 8 8 O 1.21647 * 119.99753 * 5.88885 * 7 6 2 9 9 N 1.34774 * 120.00335 * 185.89702 * 7 6 2 10 10 C 1.47020 * 125.64410 * 355.20715 * 9 7 6 11 11 C 1.54325 * 107.26779 * 178.98110 * 10 9 7 12 12 H 1.09000 * 110.72410 * 96.35169 * 11 10 9 13 13 N 1.46501 * 110.72110 * 219.44592 * 11 10 9 14 14 C 1.36934 * 120.00046 * 273.55104 * 13 11 10 15 15 H 1.08007 * 119.99828 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00568 * 179.72439 * 14 13 11 17 17 N 1.31621 * 119.99583 * 0.27073 * 16 14 13 18 18 Si 1.86796 * 120.00507 * 180.27032 * 16 14 13 19 19 H 1.48497 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.46991 * 119.99813 * 18 16 14 21 21 H 1.48503 * 109.47260 * 239.99599 * 18 16 14 22 22 C 1.55158 * 102.94391 * 337.80827 * 11 10 9 23 23 C 1.47422 * 125.64936 * 175.25585 * 9 7 6 24 24 H 1.08998 * 110.36780 * 85.24734 * 23 9 7 25 25 C 1.53000 * 110.36755 * 322.92728 * 23 9 7 26 26 H 1.09003 * 109.47449 * 270.14055 * 1 2 3 27 27 H 1.09002 * 109.46951 * 30.13968 * 1 2 3 28 28 H 1.09004 * 109.47317 * 150.13798 * 1 2 3 29 29 H 1.07994 * 124.71498 * 179.79928 * 4 3 2 30 30 H 1.07997 * 123.45994 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.88215 * 59.56467 * 10 9 7 32 32 H 1.08998 * 110.01580 * 298.46593 * 10 9 7 33 33 H 0.97000 * 120.00289 * 93.54331 * 13 11 10 34 34 H 0.97006 * 120.00253 * 180.02562 * 17 16 14 35 35 H 1.08997 * 111.00339 * 153.57978 * 22 11 10 36 36 H 1.09005 * 111.00225 * 277.42968 * 22 11 10 37 37 H 1.08996 * 109.47287 * 61.45179 * 25 23 9 38 38 H 1.09000 * 109.47278 * 181.45568 * 25 23 9 39 39 H 1.09003 * 109.47063 * 301.45867 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4692 -0.0067 5 6 3.6943 -0.8315 -0.0045 6 6 2.2791 -1.1197 0.0028 7 6 1.7290 -2.4849 0.0067 8 8 0.5296 -2.6576 -0.1004 9 7 2.5540 -3.5436 0.1292 10 6 4.0226 -3.4856 0.1666 11 6 4.5338 -4.9310 0.3423 12 1 4.7980 -5.3665 -0.6213 13 7 5.6776 -4.9687 1.2570 14 6 6.9441 -4.7642 0.7782 15 1 7.0999 -4.5756 -0.2738 16 6 8.0274 -4.7942 1.6457 17 7 7.8376 -5.0246 2.9276 18 14 9.7543 -4.5078 0.9938 19 1 9.6977 -4.2736 -0.4715 20 1 10.3454 -3.3210 1.6629 21 1 10.5927 -5.7016 1.2718 22 6 3.3116 -5.6591 0.9616 23 6 2.1333 -4.9516 0.2469 24 1 1.9742 -5.3838 -0.7410 25 6 0.8594 -5.0583 1.0876 26 1 -0.3634 0.0025 1.0277 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3634 -0.8912 -0.5117 29 1 4.9537 0.8936 -0.0121 30 1 4.4576 -1.5956 -0.0082 31 1 4.3480 -2.8725 1.0071 32 1 4.4033 -3.0685 -0.7656 33 1 5.5378 -5.1384 2.2017 34 1 8.5946 -5.0452 3.5340 35 1 3.3297 -6.7230 0.7253 36 1 3.2670 -5.5004 2.0391 37 1 0.0546 -4.5090 0.5990 38 1 0.5761 -6.1061 1.1867 39 1 1.0398 -4.6355 2.0759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988798722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:48 Heat of formation + Delta-G solvation = 5.256586 kcal Electronic energy + Delta-G solvation = -21753.258088 eV Core-core repulsion = 18594.512457 eV Total energy + Delta-G solvation = -3158.745631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50596 -39.05885 -37.84027 -35.97162 -33.40231 -33.06295 -32.58302 -30.12278 -28.15648 -26.81846 -25.83194 -24.92892 -23.06195 -21.72629 -21.33968 -19.78617 -19.15756 -18.15196 -17.48390 -17.00517 -16.70158 -16.29133 -15.67629 -15.43201 -15.34436 -14.97879 -14.55386 -14.44989 -14.18423 -14.03275 -13.61384 -13.37413 -13.27263 -13.11717 -12.93331 -12.90251 -12.80738 -12.55945 -12.36017 -12.10738 -12.07171 -11.78489 -11.68801 -11.51693 -10.96614 -10.52483 -9.87181 -9.55787 -9.35002 -9.05684 -7.93803 -5.23938 -0.21249 0.56335 0.91282 1.00486 1.50319 1.51659 1.60680 2.06076 2.30753 2.57833 3.37753 3.48076 3.74145 3.81452 3.88288 3.90115 4.17431 4.21713 4.28936 4.37729 4.47217 4.51721 4.66061 4.68121 4.73493 4.76593 4.84225 4.92304 5.07394 5.11715 5.15591 5.26119 5.28490 5.30543 5.33428 5.55582 5.56495 6.26868 6.53577 7.15880 7.34795 8.05749 8.30065 9.29388 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.004993 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.608840 B = 5606.597146 C = 7178.878814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.156 4.156 3 S 0.226 5.774 4 C -0.239 4.239 5 C -0.142 4.142 6 C -0.199 4.199 7 C 0.588 3.412 8 O -0.563 6.563 9 N -0.605 5.605 10 C 0.084 3.916 11 C 0.163 3.837 12 H 0.072 0.928 13 N -0.724 5.724 14 C -0.241 4.241 15 H 0.082 0.918 16 C -0.068 4.068 17 N -0.968 5.968 18 Si 0.967 3.033 19 H -0.263 1.263 20 H -0.296 1.296 21 H -0.297 1.297 22 C -0.124 4.124 23 C 0.137 3.863 24 H 0.087 0.913 25 C -0.154 4.154 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.188 0.812 30 H 0.163 0.837 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.940 9.642 -7.028 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.276 4.276 3 S 0.492 5.508 4 C -0.373 4.373 5 C -0.170 4.170 6 C -0.215 4.215 7 C 0.378 3.622 8 O -0.446 6.446 9 N -0.337 5.337 10 C -0.042 4.042 11 C 0.053 3.947 12 H 0.090 0.910 13 N -0.363 5.363 14 C -0.372 4.372 15 H 0.100 0.900 16 C -0.261 4.261 17 N -0.618 5.618 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.223 1.223 21 H -0.224 1.224 22 C -0.163 4.163 23 C 0.035 3.965 24 H 0.105 0.895 25 C -0.212 4.212 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.205 0.795 30 H 0.180 0.820 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.723 11.167 -7.218 19.108 hybrid contribution 1.663 -1.566 0.453 2.329 sum -12.060 9.601 -6.765 16.834 Atomic orbital electron populations 1.20639 0.86043 1.04675 1.03696 1.24844 1.02677 0.97585 1.02526 1.82610 0.93660 1.05458 1.69097 1.25805 1.03744 0.96915 1.10883 1.22252 0.95190 0.98081 1.01464 1.20182 0.93586 0.93434 1.14343 1.17506 0.85087 0.83659 0.75947 1.90603 1.15104 1.85919 1.52957 1.48448 1.07250 1.06774 1.71242 1.23317 0.78614 1.01477 1.00796 1.21421 0.87020 0.91867 0.94404 0.91031 1.42519 1.01721 1.84959 1.07099 1.19672 0.84574 1.39278 0.93705 0.90022 1.25492 1.01546 1.03359 0.95703 1.69819 1.30676 1.57950 1.03337 0.85164 0.80479 0.76562 0.78092 1.18769 1.22330 1.22434 1.23054 0.92741 1.00566 0.99931 1.21974 0.94972 0.79984 0.99616 0.89515 1.22045 0.97141 1.03082 0.98881 0.90118 0.89167 0.89506 0.79510 0.82038 0.91948 0.91157 0.79198 0.94067 0.88241 0.91536 0.91110 0.89755 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.07 9.68 71.24 0.69 -1.38 16 2 C -0.16 -4.03 6.34 25.17 0.16 -3.87 16 3 S 0.23 4.52 22.97 -56.49 -1.30 3.23 16 4 C -0.24 -5.63 11.12 66.64 0.74 -4.89 16 5 C -0.14 -4.12 8.85 22.67 0.20 -3.92 16 6 C -0.20 -6.10 5.96 -19.87 -0.12 -6.22 16 7 C 0.59 19.88 7.54 86.59 0.65 20.54 16 8 O -0.56 -20.10 11.85 -4.18 -0.05 -20.15 16 9 N -0.60 -19.55 3.24 -792.26 -2.57 -22.12 16 10 C 0.08 2.83 4.66 86.73 0.40 3.24 16 11 C 0.16 5.88 3.59 46.18 0.17 6.05 16 12 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 13 N -0.72 -33.63 5.18 -317.32 -1.64 -35.27 16 14 C -0.24 -12.34 9.98 84.03 0.84 -11.50 16 15 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 16 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 17 N -0.97 -56.79 13.06 21.65 0.28 -56.51 16 18 Si 0.97 43.90 29.55 68.60 2.03 45.93 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 22 C -0.12 -3.76 6.11 31.99 0.20 -3.57 16 23 C 0.14 3.94 3.75 45.47 0.17 4.11 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 C -0.15 -4.19 8.76 71.98 0.63 -3.55 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 2.34 5.82 -2.39 -0.01 2.32 16 29 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.16 5.00 3.80 -2.91 -0.01 4.99 16 31 H 0.06 2.37 6.52 -2.39 -0.02 2.35 16 32 H 0.07 2.27 6.92 -2.39 -0.02 2.26 16 33 H 0.38 19.09 7.71 -92.71 -0.72 18.38 16 34 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 35 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.07 2.18 7.92 -2.38 -0.02 2.16 16 37 H 0.07 2.14 5.92 -2.39 -0.01 2.12 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -62.45 324.81 2.31 -60.14 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.36 Total: 32.98 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.20 Total: -8.22 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -3.93 Total: -113.90 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.30 Total: 3.23 kcal Total: -62.45 2.31 -60.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988798722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.395 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds