Wall clock time and date at job start Fri Apr 10 2020 20:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46871 * 2 1 4 4 C 1.52995 * 109.47035 * 119.99920 * 2 1 3 5 5 N 1.46497 * 109.47197 * 175.00100 * 4 2 1 6 6 C 1.46504 * 120.00018 * 270.00171 * 5 4 2 7 7 C 1.36937 * 120.00074 * 90.00011 * 5 4 2 8 8 H 1.07998 * 120.00267 * 20.38897 * 7 5 4 9 9 C 1.38817 * 120.00149 * 200.39326 * 7 5 4 10 10 N 1.31617 * 119.99912 * 14.99119 * 9 7 5 11 11 Si 1.86793 * 120.00119 * 194.99649 * 9 7 5 12 12 H 1.48498 * 109.47511 * 84.99712 * 11 9 7 13 13 H 1.48501 * 109.47198 * 205.00131 * 11 9 7 14 14 H 1.48501 * 109.47051 * 324.99463 * 11 9 7 15 15 N 1.46496 * 109.46861 * 240.00108 * 2 1 3 16 16 C 1.34781 * 119.99927 * 85.00047 * 15 2 1 17 17 O 1.21276 * 120.00005 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99499 * 179.97438 * 16 15 2 19 19 H 1.09002 * 110.81245 * 61.86375 * 18 16 15 20 20 C 1.55000 * 110.75477 * 298.54682 * 18 16 15 21 21 C 1.55824 * 102.78795 * 241.67890 * 20 18 16 22 22 H 1.09004 * 115.38572 * 158.83666 * 21 20 18 23 23 O 1.46535 * 101.24488 * 32.41698 * 21 20 18 24 24 C 1.46538 * 99.68009 * 305.83858 * 23 21 20 25 25 H 1.09003 * 116.25690 * 179.97438 * 24 23 21 26 26 C 1.55817 * 101.24534 * 305.84280 * 24 23 21 27 27 H 1.09000 * 118.71790 * 172.21101 * 26 24 23 28 28 C 1.53004 * 117.24187 * 330.28009 * 26 24 23 29 29 C 1.53000 * 60.86499 * 89.21351 * 28 26 24 30 30 H 1.09002 * 120.87778 * 112.80286 * 29 28 26 31 31 H 1.09002 * 109.47409 * 300.00086 * 1 2 3 32 32 H 1.09002 * 109.47437 * 59.99798 * 1 2 3 33 33 H 1.09007 * 109.47364 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47630 * 295.00115 * 4 2 1 35 35 H 1.09002 * 109.47364 * 55.00289 * 4 2 1 36 36 H 1.09002 * 109.46948 * 95.13746 * 6 5 4 37 37 H 1.08998 * 109.46825 * 215.13427 * 6 5 4 38 38 H 1.08992 * 109.47072 * 335.13561 * 6 5 4 39 39 H 0.97001 * 120.00425 * 179.97438 * 10 9 7 40 40 H 0.97002 * 119.99968 * 264.99676 * 15 2 1 41 41 H 1.09003 * 110.74658 * 359.97438 * 20 18 16 42 42 H 1.08990 * 110.75295 * 123.35197 * 20 18 16 43 43 H 1.08998 * 117.40967 * 341.48150 * 28 26 24 44 44 H 1.08993 * 117.41195 * 196.95099 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2798 0.1649 1.7240 8 1 3.8671 0.8401 2.4589 9 6 5.6008 0.3018 1.3202 10 7 6.0233 -0.3082 0.2331 11 14 6.7790 1.3517 2.3196 12 1 7.3499 0.5402 3.4245 13 1 7.8757 1.8360 1.4433 14 1 6.0480 2.5139 2.8856 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8581 1.1584 -2.4117 18 6 2.6498 -0.7285 -3.5874 19 1 1.9748 -1.5359 -3.8715 20 6 4.0857 -1.2669 -3.3625 21 6 4.9130 -0.5040 -4.4403 22 1 5.9845 -0.4427 -4.2501 23 8 4.1920 0.7700 -4.5050 24 6 2.8379 0.2739 -4.7655 25 1 2.0584 1.0294 -4.8649 26 6 3.0758 -0.6112 -6.0256 27 1 2.2576 -1.2310 -6.3924 28 6 4.2128 -0.2023 -6.9643 29 6 4.5118 -1.1496 -5.8006 30 1 4.7947 -2.1865 -5.9819 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.7516 -0.1583 2.1370 35 1 1.6054 -1.7198 1.2951 36 1 4.3630 -1.7605 -0.4772 37 1 5.0416 -2.2452 1.0953 38 1 3.4385 -2.8370 0.5973 39 1 6.9463 -0.2122 -0.0493 40 1 2.2490 -1.6318 -1.1526 41 1 4.4378 -1.0210 -2.3606 42 1 4.1263 -2.3424 -3.5344 43 1 4.5839 0.8197 -6.8874 44 1 4.2113 -0.6259 -7.9685 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:44 Heat of formation + Delta-G solvation = -6.249137 kcal Electronic energy + Delta-G solvation = -25513.026311 eV Core-core repulsion = 22046.861978 eV Total energy + Delta-G solvation = -3466.164333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38322 -38.85668 -36.28446 -34.19447 -33.94611 -32.25166 -30.94975 -29.86926 -29.15841 -26.18747 -25.59913 -24.33296 -22.75442 -21.56107 -20.46740 -20.15488 -19.89763 -19.32477 -17.06559 -16.79510 -16.38990 -15.99422 -15.36188 -14.86805 -14.24114 -14.16506 -13.78950 -13.64389 -13.29558 -13.08409 -12.85841 -12.36888 -12.31365 -12.13342 -11.84562 -11.54583 -11.43421 -11.36764 -11.14499 -11.05416 -10.89344 -10.81958 -10.75912 -10.52641 -10.22918 -10.10128 -9.92909 -9.81785 -9.75790 -9.61398 -9.06916 -8.56322 -8.28971 -6.75937 -5.71764 -3.13275 3.26829 3.41576 3.48326 3.49033 3.49708 3.76559 4.06218 4.53600 4.65253 4.67352 4.70488 4.94207 5.02201 5.13091 5.33180 5.35295 5.41415 5.49227 5.52010 5.63537 5.71878 5.73877 5.76331 5.88950 6.00612 6.02253 6.07163 6.11634 6.18311 6.23734 6.27125 6.48692 6.51465 6.55798 6.64696 6.75808 6.92143 7.24474 7.32590 7.65793 7.83070 8.20204 8.39160 8.91614 9.24591 9.87512 10.34528 11.34083 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.005926 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.345659 B = 4724.044377 C = 5856.837853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.160 3.840 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.902 5.902 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.281 1.281 15 N -0.699 5.699 16 C 0.529 3.471 17 O -0.547 6.547 18 C -0.134 4.134 19 H 0.100 0.900 20 C -0.138 4.138 21 C 0.094 3.906 22 H 0.132 0.868 23 O -0.359 6.359 24 C 0.118 3.882 25 H 0.134 0.866 26 C -0.201 4.201 27 H 0.119 0.881 28 C -0.136 4.136 29 C -0.195 4.195 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.033 0.967 37 H 0.043 0.957 38 H -0.007 1.007 39 H 0.251 0.749 40 H 0.393 0.607 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 -6.480 -10.525 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.207 1.207 15 N -0.348 5.348 16 C 0.315 3.685 17 O -0.425 6.425 18 C -0.155 4.155 19 H 0.118 0.882 20 C -0.175 4.175 21 C 0.037 3.963 22 H 0.150 0.850 23 O -0.277 6.277 24 C 0.060 3.940 25 H 0.152 0.848 26 C -0.219 4.219 27 H 0.137 0.863 28 C -0.173 4.173 29 C -0.214 4.214 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.012 0.988 39 H 0.061 0.939 40 H 0.227 0.773 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.979 -5.413 -10.551 13.759 hybrid contribution 0.763 -0.223 0.383 0.882 sum -6.216 -5.636 -10.168 13.183 Atomic orbital electron populations 1.22150 0.97038 1.00943 1.01612 1.21845 0.91551 0.99194 0.86516 0.89741 1.21180 0.85774 0.97153 0.94409 1.43900 0.99043 1.20841 1.68085 1.20885 0.94496 0.85075 0.97961 1.19162 0.92909 1.09702 1.16701 0.91424 1.24893 0.98534 0.99363 0.96499 1.70024 1.15859 1.46778 1.22064 0.86298 0.80964 0.80044 0.79370 1.21645 1.21838 1.20672 1.45752 1.66257 1.13512 1.09242 1.20053 0.77074 0.87035 0.84386 1.90640 1.50768 1.15820 1.85269 1.22889 0.98925 0.99112 0.94621 0.88217 1.23282 0.92117 0.99730 1.02398 1.24182 0.98010 0.82702 0.91440 0.85036 1.90172 1.18900 1.26407 1.92220 1.23896 0.87032 0.93492 0.89582 0.84808 1.24337 0.92774 1.04568 1.00216 0.86269 1.22771 1.00001 1.00682 0.93797 1.24396 0.99997 1.00170 0.96803 0.86200 0.92191 0.93039 0.93299 0.92386 0.94117 0.94842 0.93867 0.98805 0.93928 0.77287 0.87179 0.90363 0.88252 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 37.16 0.35 -2.06 16 2 C 0.12 2.20 2.88 -67.94 -0.20 2.00 16 3 H 0.08 1.96 7.58 -51.93 -0.39 1.57 16 4 C 0.14 2.76 5.33 -4.05 -0.02 2.74 16 5 N -0.60 -14.11 2.78 -181.12 -0.50 -14.61 16 6 C 0.16 3.60 7.60 59.85 0.45 4.06 16 7 C -0.26 -6.88 9.68 -15.06 -0.15 -7.03 16 8 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 9 C 0.01 0.15 5.06 -17.43 -0.09 0.07 16 10 N -0.90 -25.20 10.67 55.49 0.59 -24.61 16 11 Si 0.90 22.13 29.58 -169.99 -5.03 17.10 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 N -0.70 -12.64 4.33 -53.81 -0.23 -12.87 16 16 C 0.53 10.14 6.98 -10.98 -0.08 10.06 16 17 O -0.55 -12.56 15.56 5.56 0.09 -12.47 16 18 C -0.13 -2.05 2.89 -89.21 -0.26 -2.30 16 19 H 0.10 1.22 8.03 -51.93 -0.42 0.81 16 20 C -0.14 -2.14 6.11 -24.17 -0.15 -2.29 16 21 C 0.09 1.45 5.66 -23.72 -0.13 1.32 16 22 H 0.13 1.98 8.14 -51.93 -0.42 1.55 16 23 O -0.36 -6.68 10.78 -35.23 -0.38 -7.06 16 24 C 0.12 1.84 4.58 -23.72 -0.11 1.73 16 25 H 0.13 2.13 7.74 -51.93 -0.40 1.73 16 26 C -0.20 -2.41 6.63 -88.06 -0.58 -3.00 16 27 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 28 C -0.14 -1.55 9.80 -26.73 -0.26 -1.81 16 29 C -0.20 -2.36 6.63 -88.06 -0.58 -2.94 16 30 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 35 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 36 H 0.03 0.78 5.56 -51.93 -0.29 0.49 16 37 H 0.04 1.08 7.22 -51.93 -0.37 0.70 16 38 H -0.01 -0.13 7.83 -51.93 -0.41 -0.53 16 39 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.39 6.50 7.18 -40.82 -0.29 6.21 16 41 H 0.11 2.20 6.32 -51.93 -0.33 1.87 16 42 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 43 H 0.10 1.28 7.65 -51.93 -0.40 0.88 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -31.75 346.53 -9.09 -40.84 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.05 Total: 7.91 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.80 Total: 0.55 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.15 Total: -52.09 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.29 Total: -19.53 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.75 -9.09 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.591 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds