Wall clock time and date at job start Fri Apr 10 2020 20:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47355 * 2 1 4 4 C 1.53000 * 109.47567 * 240.00092 * 2 1 3 5 5 N 1.46501 * 109.47054 * 185.00041 * 4 2 1 6 6 C 1.46502 * 120.00121 * 89.99825 * 5 4 2 7 7 C 1.36932 * 120.00057 * 269.99340 * 5 4 2 8 8 H 1.08002 * 119.99913 * 142.13912 * 7 5 4 9 9 C 1.38810 * 119.99977 * 322.14412 * 7 5 4 10 10 N 1.31624 * 119.99797 * 156.02366 * 9 7 5 11 11 Si 1.86794 * 119.99994 * 336.01879 * 9 7 5 12 12 H 1.48506 * 109.47055 * 95.19757 * 11 9 7 13 13 H 1.48504 * 109.47199 * 215.19022 * 11 9 7 14 14 H 1.48501 * 109.47477 * 335.19473 * 11 9 7 15 15 N 1.46499 * 109.46989 * 119.99438 * 2 1 3 16 16 C 1.34773 * 120.00170 * 275.00231 * 15 2 1 17 17 O 1.21274 * 120.00048 * 0.02562 * 16 15 2 18 18 C 1.50704 * 120.00033 * 179.97438 * 16 15 2 19 19 H 1.09004 * 110.80795 * 61.86162 * 18 16 15 20 20 C 1.55002 * 110.74960 * 298.55254 * 18 16 15 21 21 C 1.55822 * 102.78252 * 241.67055 * 20 18 16 22 22 H 1.09006 * 115.38134 * 158.83595 * 21 20 18 23 23 O 1.46525 * 101.24733 * 32.41936 * 21 20 18 24 24 C 1.46534 * 99.68221 * 305.84133 * 23 21 20 25 25 H 1.09001 * 115.68301 * 180.34636 * 24 23 21 26 26 C 1.55823 * 101.24073 * 305.83841 * 24 23 21 27 27 H 1.09001 * 118.19536 * 171.69795 * 26 24 23 28 28 C 1.52998 * 117.24150 * 330.28317 * 26 24 23 29 29 C 1.52992 * 60.86889 * 89.21165 * 28 26 24 30 30 H 1.09005 * 120.88322 * 112.80104 * 29 28 26 31 31 H 1.09001 * 109.46916 * 60.00274 * 1 2 3 32 32 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47479 * 300.00358 * 1 2 3 34 34 H 1.09003 * 109.46760 * 304.99449 * 4 2 1 35 35 H 1.08996 * 109.47201 * 64.99909 * 4 2 1 36 36 H 1.08998 * 109.47173 * 95.52194 * 6 5 4 37 37 H 1.08994 * 109.47478 * 215.52746 * 6 5 4 38 38 H 1.09008 * 109.47163 * 335.52983 * 6 5 4 39 39 H 0.96997 * 119.99673 * 179.97438 * 10 9 7 40 40 H 0.97003 * 119.99896 * 95.00377 * 15 2 1 41 41 H 1.08999 * 110.74699 * 123.34965 * 20 18 16 42 42 H 1.08997 * 110.75009 * 359.97438 * 20 18 16 43 43 H 1.09004 * 117.41150 * 341.47478 * 28 26 24 44 44 H 1.08998 * 117.41800 * 196.95635 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1904 6 6 4.1259 -1.9918 -0.5610 7 6 4.2799 0.1649 -1.7239 8 1 5.1937 0.4585 -1.2287 9 6 3.8959 0.7923 -2.9010 10 7 4.3310 2.0044 -3.1729 11 14 2.7618 -0.0837 -4.0993 12 1 1.3581 0.3280 -3.8433 13 1 3.1375 0.2768 -5.4901 14 1 2.8881 -1.5520 -3.9172 15 7 2.0182 -0.6905 1.1962 16 6 2.1469 -0.0181 2.3571 17 8 1.8580 1.1585 2.4117 18 6 2.6487 -0.7286 3.5878 19 1 3.6610 -1.1021 3.4336 20 6 1.6923 -1.8822 3.9842 21 6 1.2080 -1.4565 5.4028 22 1 0.2740 -1.9108 5.7335 23 8 1.2107 0.0036 5.2795 24 6 2.5899 0.2104 4.8299 25 1 2.8804 1.2469 4.6581 26 6 3.3872 -0.5309 5.9447 27 1 4.4599 -0.6666 5.8071 28 6 2.7629 -0.5748 7.3408 29 6 2.4308 -1.6844 6.3412 30 1 2.7681 -2.7074 6.5084 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.6055 -1.7198 -1.2951 35 1 1.7517 -0.1583 -2.1369 36 1 4.3718 -2.7291 -1.3252 37 1 5.0365 -1.6826 -0.0480 38 1 3.4348 -2.4311 0.1585 39 1 4.0629 2.4427 -3.9957 40 1 2.2490 -1.6317 1.1527 41 1 2.2282 -2.8303 4.0276 42 1 0.8526 -1.9428 3.2919 43 1 1.9804 0.1505 7.5637 44 1 3.4164 -0.8299 8.1751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:46 Heat of formation + Delta-G solvation = -1.082457 kcal Electronic energy + Delta-G solvation = -25032.576332 eV Core-core repulsion = 21566.636043 eV Total energy + Delta-G solvation = -3465.940289 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70145 -39.09587 -36.60421 -34.45636 -34.01089 -32.48840 -31.50906 -30.33772 -29.48235 -26.69096 -25.69874 -24.56791 -23.02553 -21.56685 -20.78993 -20.50921 -20.20535 -19.59436 -17.42537 -16.93957 -16.70223 -16.17193 -15.53931 -15.03172 -14.78881 -14.40471 -14.10495 -14.07209 -13.25659 -13.18147 -12.96372 -12.70938 -12.65636 -12.57074 -12.24857 -11.96204 -11.81173 -11.64766 -11.52982 -11.41710 -11.33743 -11.27190 -10.86824 -10.55790 -10.42362 -10.25827 -10.15862 -10.08501 -9.87172 -9.64685 -9.27157 -8.62584 -8.44699 -6.85490 -6.02540 -3.43571 3.05402 3.25578 3.27285 3.41924 3.45467 3.48384 3.79252 4.32763 4.37597 4.42625 4.48607 4.63068 4.67316 4.86344 4.94019 5.00585 5.07675 5.28437 5.33611 5.38069 5.43636 5.55189 5.57483 5.63816 5.64888 5.79715 5.83958 5.88539 5.94596 6.01071 6.02715 6.04714 6.21201 6.35514 6.38802 6.50051 6.56442 6.61732 6.84793 7.07925 7.98168 8.01143 8.35082 8.69834 8.93460 9.67015 10.06290 11.13121 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.004054 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.854578 B = 6904.356201 C = 7033.010724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 H 0.094 0.906 4 C 0.131 3.869 5 N -0.607 5.607 6 C 0.128 3.872 7 C -0.271 4.271 8 H 0.077 0.923 9 C 0.038 3.962 10 N -0.894 5.894 11 Si 0.873 3.127 12 H -0.284 1.284 13 H -0.299 1.299 14 H -0.270 1.270 15 N -0.705 5.705 16 C 0.524 3.476 17 O -0.538 6.538 18 C -0.135 4.135 19 H 0.109 0.891 20 C -0.133 4.133 21 C 0.088 3.912 22 H 0.131 0.869 23 O -0.363 6.363 24 C 0.120 3.880 25 H 0.140 0.860 26 C -0.197 4.197 27 H 0.124 0.876 28 C -0.132 4.132 29 C -0.200 4.200 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.010 0.990 37 H 0.038 0.962 38 H 0.025 0.975 39 H 0.264 0.736 40 H 0.392 0.608 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -11.311 17.283 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 H 0.112 0.888 4 C 0.004 3.996 5 N -0.331 5.331 6 C -0.017 4.017 7 C -0.400 4.400 8 H 0.094 0.906 9 C -0.163 4.163 10 N -0.535 5.535 11 Si 0.703 3.297 12 H -0.212 1.212 13 H -0.227 1.227 14 H -0.195 1.195 15 N -0.356 5.356 16 C 0.309 3.691 17 O -0.414 6.414 18 C -0.157 4.157 19 H 0.127 0.873 20 C -0.171 4.171 21 C 0.030 3.970 22 H 0.149 0.851 23 O -0.281 6.281 24 C 0.061 3.939 25 H 0.158 0.842 26 C -0.216 4.216 27 H 0.142 0.858 28 C -0.168 4.168 29 C -0.218 4.218 30 H 0.139 0.861 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.227 0.773 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.756 -10.167 17.197 20.790 hybrid contribution -0.165 -1.112 -0.959 1.478 sum -5.920 -11.279 16.238 20.638 Atomic orbital electron populations 1.22148 0.96600 1.01102 1.02104 1.21754 0.92065 0.99501 0.85241 0.88788 1.21524 0.85247 0.97453 0.95344 1.43948 1.00069 1.20828 1.68242 1.21103 0.96336 0.89292 0.94975 1.18722 1.07032 1.10667 1.03532 0.90564 1.25468 0.97826 0.95880 0.97157 1.69905 1.46768 1.11199 1.25585 0.86993 0.80120 0.81353 0.81248 1.21198 1.22722 1.19481 1.45996 1.66672 1.13527 1.09451 1.20072 0.77814 0.87179 0.84062 1.90688 1.49967 1.15888 1.84900 1.22920 1.01391 0.96948 0.94425 0.87308 1.23167 0.99291 0.97692 0.96995 1.24193 0.97300 0.82361 0.93164 0.85126 1.90152 1.29698 1.20875 1.87376 1.24003 0.80967 0.99592 0.89290 0.84222 1.24362 0.98705 1.02190 0.96309 0.85835 1.22777 1.02414 1.00050 0.91601 1.24334 0.98695 0.95501 1.03252 0.86061 0.91915 0.93242 0.92558 0.93957 0.91408 0.97221 0.94303 0.95654 0.92633 0.77330 0.89654 0.90017 0.88175 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.48 37.15 0.35 -2.28 16 2 C 0.12 2.33 2.88 -67.93 -0.20 2.13 16 3 H 0.09 2.23 7.58 -51.92 -0.39 1.84 16 4 C 0.13 2.70 4.14 -4.04 -0.02 2.68 16 5 N -0.61 -13.85 2.32 -181.12 -0.42 -14.28 16 6 C 0.13 2.37 10.23 59.85 0.61 2.98 16 7 C -0.27 -7.50 9.92 -15.06 -0.15 -7.65 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.04 1.08 5.27 -17.43 -0.09 0.99 16 10 N -0.89 -27.28 13.97 55.49 0.78 -26.50 16 11 Si 0.87 21.72 25.19 -169.99 -4.28 17.43 16 12 H -0.28 -6.80 6.65 56.52 0.38 -6.42 16 13 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 N -0.71 -11.58 4.43 -53.81 -0.24 -11.82 16 16 C 0.52 8.95 6.98 -10.98 -0.08 8.88 16 17 O -0.54 -11.54 15.57 5.56 0.09 -11.45 16 18 C -0.14 -1.71 2.89 -89.21 -0.26 -1.97 16 19 H 0.11 1.22 8.03 -51.93 -0.42 0.80 16 20 C -0.13 -1.32 6.11 -24.17 -0.15 -1.47 16 21 C 0.09 0.89 5.66 -23.72 -0.13 0.75 16 22 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 23 O -0.36 -5.13 10.78 -35.23 -0.38 -5.51 16 24 C 0.12 1.56 4.57 -23.72 -0.11 1.45 16 25 H 0.14 2.03 7.75 -51.93 -0.40 1.62 16 26 C -0.20 -1.97 6.63 -88.06 -0.58 -2.55 16 27 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 28 C -0.13 -1.18 9.80 -26.74 -0.26 -1.44 16 29 C -0.20 -1.74 6.63 -88.06 -0.58 -2.33 16 30 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.75 8.07 -51.93 -0.42 0.34 16 35 H 0.07 1.56 3.43 -51.93 -0.18 1.38 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.02 0.37 5.77 -51.92 -0.30 0.07 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.39 5.45 6.21 -40.82 -0.25 5.20 16 41 H 0.08 0.64 8.03 -51.93 -0.42 0.23 16 42 H 0.08 0.86 7.73 -51.93 -0.40 0.45 16 43 H 0.10 1.01 7.65 -51.93 -0.40 0.61 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -33.49 344.18 -7.88 -41.37 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.97 Total: 5.39 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.64 Total: 0.18 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.12 Total: -52.59 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.29 Total: -16.96 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.28 Total: 17.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.49 -7.88 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.286 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds