Wall clock time and date at job start Fri Apr 10 2020 20:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47355 * 2 1 4 4 C 1.53000 * 109.47567 * 240.00092 * 2 1 3 5 5 N 1.46501 * 109.47054 * 185.00041 * 4 2 1 6 6 C 1.46502 * 120.00121 * 89.99825 * 5 4 2 7 7 C 1.36932 * 120.00057 * 269.99340 * 5 4 2 8 8 H 1.08002 * 119.99913 * 142.13912 * 7 5 4 9 9 C 1.38810 * 119.99977 * 322.14412 * 7 5 4 10 10 N 1.31624 * 119.99797 * 156.02366 * 9 7 5 11 11 Si 1.86794 * 119.99994 * 336.01879 * 9 7 5 12 12 H 1.48506 * 109.47055 * 95.19757 * 11 9 7 13 13 H 1.48504 * 109.47199 * 215.19022 * 11 9 7 14 14 H 1.48501 * 109.47477 * 335.19473 * 11 9 7 15 15 N 1.46499 * 109.46989 * 119.99438 * 2 1 3 16 16 C 1.34773 * 120.00170 * 275.00231 * 15 2 1 17 17 O 1.21274 * 120.00048 * 0.02562 * 16 15 2 18 18 C 1.50704 * 120.00033 * 179.97438 * 16 15 2 19 19 H 1.09004 * 110.80795 * 61.86162 * 18 16 15 20 20 C 1.55002 * 110.74960 * 298.55254 * 18 16 15 21 21 C 1.55822 * 102.78252 * 241.67055 * 20 18 16 22 22 H 1.09006 * 115.38134 * 158.83595 * 21 20 18 23 23 O 1.46525 * 101.24733 * 32.41936 * 21 20 18 24 24 C 1.46534 * 99.68221 * 305.84133 * 23 21 20 25 25 H 1.09001 * 115.68301 * 180.34636 * 24 23 21 26 26 C 1.55823 * 101.24073 * 305.83841 * 24 23 21 27 27 H 1.09001 * 118.19536 * 171.69795 * 26 24 23 28 28 C 1.52998 * 117.24150 * 330.28317 * 26 24 23 29 29 C 1.52992 * 60.86889 * 89.21165 * 28 26 24 30 30 H 1.09005 * 120.88322 * 112.80104 * 29 28 26 31 31 H 1.09001 * 109.46916 * 60.00274 * 1 2 3 32 32 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47479 * 300.00358 * 1 2 3 34 34 H 1.09003 * 109.46760 * 304.99449 * 4 2 1 35 35 H 1.08996 * 109.47201 * 64.99909 * 4 2 1 36 36 H 1.08998 * 109.47173 * 95.52194 * 6 5 4 37 37 H 1.08994 * 109.47478 * 215.52746 * 6 5 4 38 38 H 1.09008 * 109.47163 * 335.52983 * 6 5 4 39 39 H 0.96997 * 119.99673 * 179.97438 * 10 9 7 40 40 H 0.97003 * 119.99896 * 95.00377 * 15 2 1 41 41 H 1.08999 * 110.74699 * 123.34965 * 20 18 16 42 42 H 1.08997 * 110.75009 * 359.97438 * 20 18 16 43 43 H 1.09004 * 117.41150 * 341.47478 * 28 26 24 44 44 H 1.08998 * 117.41800 * 196.95635 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1904 6 6 4.1259 -1.9918 -0.5610 7 6 4.2799 0.1649 -1.7239 8 1 5.1937 0.4585 -1.2287 9 6 3.8959 0.7923 -2.9010 10 7 4.3310 2.0044 -3.1729 11 14 2.7618 -0.0837 -4.0993 12 1 1.3581 0.3280 -3.8433 13 1 3.1375 0.2768 -5.4901 14 1 2.8881 -1.5520 -3.9172 15 7 2.0182 -0.6905 1.1962 16 6 2.1469 -0.0181 2.3571 17 8 1.8580 1.1585 2.4117 18 6 2.6487 -0.7286 3.5878 19 1 3.6610 -1.1021 3.4336 20 6 1.6923 -1.8822 3.9842 21 6 1.2080 -1.4565 5.4028 22 1 0.2740 -1.9108 5.7335 23 8 1.2107 0.0036 5.2795 24 6 2.5899 0.2104 4.8299 25 1 2.8804 1.2469 4.6581 26 6 3.3872 -0.5309 5.9447 27 1 4.4599 -0.6666 5.8071 28 6 2.7629 -0.5748 7.3408 29 6 2.4308 -1.6844 6.3412 30 1 2.7681 -2.7074 6.5084 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.6055 -1.7198 -1.2951 35 1 1.7517 -0.1583 -2.1369 36 1 4.3718 -2.7291 -1.3252 37 1 5.0365 -1.6826 -0.0480 38 1 3.4348 -2.4311 0.1585 39 1 4.0629 2.4427 -3.9957 40 1 2.2490 -1.6317 1.1527 41 1 2.2282 -2.8303 4.0276 42 1 0.8526 -1.9428 3.2919 43 1 1.9804 0.1505 7.5637 44 1 3.4164 -0.8299 8.1751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754318669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:46 Heat of formation + Delta-G solvation = -24.955289 kcal Electronic energy + Delta-G solvation = -25033.611536 eV Core-core repulsion = 21566.636043 eV Total energy + Delta-G solvation = -3466.975493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59861 -40.47836 -38.26366 -35.69297 -35.27302 -33.74498 -33.43855 -31.64027 -30.35507 -28.28437 -27.53962 -25.58662 -23.95390 -23.22132 -22.23273 -21.38584 -21.25465 -20.71879 -18.97003 -18.34106 -17.79025 -17.24814 -17.19087 -16.64741 -16.16722 -15.82186 -15.26200 -15.20664 -14.92890 -14.68199 -14.50486 -14.24666 -13.66558 -13.64730 -13.56555 -13.35043 -13.20722 -12.85809 -12.82313 -12.64155 -12.43078 -12.27350 -12.23219 -12.05706 -12.04254 -11.86203 -11.65414 -11.23628 -11.01462 -10.73899 -10.62470 -10.54527 -9.99293 -8.76011 -8.22170 -5.59985 1.29992 1.41115 1.52657 1.72581 2.18959 2.40931 2.64416 2.80513 2.99534 3.41474 3.43704 3.54271 3.61927 3.82083 3.89446 3.97411 4.08415 4.17312 4.22125 4.26982 4.41830 4.43310 4.61237 4.61321 4.62709 4.68400 4.77204 4.81142 4.83969 4.90722 4.94859 4.97856 5.04283 5.11538 5.12830 5.16189 5.28690 5.33176 5.56324 5.63621 5.91793 6.14590 6.66709 6.96933 7.38233 7.60933 8.00763 8.98273 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.004054 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.854578 B = 6904.356201 C = 7033.010724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.128 3.872 3 H 0.034 0.966 4 C 0.129 3.871 5 N -0.619 5.619 6 C 0.125 3.875 7 C -0.263 4.263 8 H 0.030 0.970 9 C -0.024 4.024 10 N -0.950 5.950 11 Si 0.945 3.055 12 H -0.269 1.269 13 H -0.309 1.309 14 H -0.250 1.250 15 N -0.694 5.694 16 C 0.515 3.485 17 O -0.593 6.593 18 C -0.128 4.128 19 H 0.129 0.871 20 C -0.123 4.123 21 C 0.079 3.921 22 H 0.152 0.848 23 O -0.399 6.399 24 C 0.105 3.895 25 H 0.106 0.894 26 C -0.205 4.205 27 H 0.138 0.862 28 C -0.134 4.134 29 C -0.177 4.177 30 H 0.153 0.847 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.019 0.981 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.262 0.738 40 H 0.408 0.592 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 -15.999 18.432 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.020 3.980 3 H 0.052 0.948 4 C 0.003 3.997 5 N -0.343 5.343 6 C -0.019 4.019 7 C -0.393 4.393 8 H 0.048 0.952 9 C -0.220 4.220 10 N -0.594 5.594 11 Si 0.773 3.227 12 H -0.196 1.196 13 H -0.238 1.238 14 H -0.173 1.173 15 N -0.346 5.346 16 C 0.303 3.697 17 O -0.473 6.473 18 C -0.149 4.149 19 H 0.147 0.853 20 C -0.161 4.161 21 C 0.022 3.978 22 H 0.169 0.831 23 O -0.319 6.319 24 C 0.047 3.953 25 H 0.124 0.876 26 C -0.223 4.223 27 H 0.156 0.844 28 C -0.171 4.171 29 C -0.195 4.195 30 H 0.171 0.829 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.246 0.754 41 H 0.141 0.859 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.028 -14.938 18.374 24.701 hybrid contribution 0.257 0.422 -1.194 1.292 sum -6.771 -14.516 17.180 23.488 Atomic orbital electron populations 1.22042 0.94053 1.03234 1.01561 1.21415 0.93983 0.96466 0.86124 0.94806 1.21611 0.83908 0.99491 0.94686 1.44055 1.00846 1.21154 1.68234 1.21256 0.97053 0.87809 0.95832 1.18585 1.06038 1.11473 1.03164 0.95191 1.26164 1.00562 0.96197 0.99073 1.70059 1.49946 1.13151 1.26235 0.85825 0.78551 0.80760 0.77575 1.19631 1.23773 1.17349 1.45832 1.66263 1.14076 1.08433 1.20976 0.76697 0.86718 0.85330 1.90668 1.52287 1.18557 1.85812 1.22938 1.02886 0.97501 0.91604 0.85334 1.23209 0.98691 0.97755 0.96457 1.24564 0.99079 0.80266 0.93927 0.83112 1.90122 1.30254 1.23841 1.87634 1.23926 0.81658 0.98614 0.91123 0.87636 1.24261 0.99209 1.02985 0.95880 0.84419 1.22867 1.02232 1.00047 0.91914 1.24448 0.96866 0.96444 1.01732 0.82903 0.91870 0.89600 0.93807 0.89403 0.93738 0.96257 0.95072 0.91088 0.92863 0.75367 0.85851 0.90351 0.90111 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.48 71.98 0.68 -3.99 16 2 C 0.13 4.85 2.88 44.99 0.13 4.98 16 3 H 0.03 1.69 7.58 -2.38 -0.02 1.67 16 4 C 0.13 5.01 4.14 86.38 0.36 5.36 16 5 N -0.62 -27.46 2.32 -726.93 -1.69 -29.15 16 6 C 0.12 4.22 10.23 127.77 1.31 5.53 16 7 C -0.26 -14.94 9.92 84.03 0.83 -14.10 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 C -0.02 -1.38 5.27 84.86 0.45 -0.93 16 10 N -0.95 -60.72 13.97 21.65 0.30 -60.42 16 11 Si 0.95 45.10 25.19 68.60 1.73 46.83 16 12 H -0.27 -12.10 6.65 99.48 0.66 -11.44 16 13 H -0.31 -15.11 7.11 99.48 0.71 -14.41 16 14 H -0.25 -11.00 7.11 99.48 0.71 -10.30 16 15 N -0.69 -21.70 4.43 -442.54 -1.96 -23.66 16 16 C 0.52 17.67 6.98 87.66 0.61 18.28 16 17 O -0.59 -26.98 15.57 -3.01 -0.05 -27.02 16 18 C -0.13 -3.04 2.89 -9.88 -0.03 -3.07 16 19 H 0.13 2.53 8.03 -2.39 -0.02 2.51 16 20 C -0.12 -1.98 6.11 32.26 0.20 -1.78 16 21 C 0.08 1.36 5.66 32.54 0.18 1.54 16 22 H 0.15 1.93 8.14 -2.38 -0.02 1.91 16 23 O -0.40 -11.26 10.78 -148.98 -1.61 -12.87 16 24 C 0.10 2.78 4.57 32.54 0.15 2.93 16 25 H 0.11 3.40 7.75 -2.39 -0.02 3.38 16 26 C -0.21 -3.70 6.63 -9.13 -0.06 -3.76 16 27 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 28 C -0.13 -2.11 9.80 30.59 0.30 -1.81 16 29 C -0.18 -2.41 6.63 -9.14 -0.06 -2.47 16 30 H 0.15 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 2.66 8.07 -2.39 -0.02 2.64 16 35 H 0.04 1.96 3.43 -2.39 -0.01 1.95 16 36 H 0.02 0.63 8.14 -2.39 -0.02 0.62 16 37 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 38 H 0.07 1.72 5.77 -2.38 -0.01 1.71 16 39 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.41 9.77 6.21 -92.71 -0.58 9.20 16 41 H 0.12 1.09 8.03 -2.39 -0.02 1.07 16 42 H 0.08 1.34 7.73 -2.39 -0.02 1.32 16 43 H 0.08 1.59 7.65 -2.39 -0.02 1.58 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -80.23 344.18 2.16 -78.07 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.38 Total: 21.49 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.05 Total: 6.72 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.35 Total: -113.22 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.65 Total: -39.89 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.73 Total: 46.83 kcal Total: -80.23 2.16 -78.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.118 kcal (2) G-P(sol) polarization free energy of solvation -80.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds