Wall clock time and date at job start Fri Apr 10 2020 20:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47198 * 2 1 4 4 N 1.46503 * 109.47129 * 120.00839 * 2 1 3 5 5 N 1.40067 * 126.04394 * 299.68464 * 4 2 1 6 6 C 1.30840 * 108.37451 * 179.87981 * 5 4 2 7 7 C 1.39757 * 108.32498 * 0.38395 * 6 5 4 8 8 C 1.35252 * 126.04602 * 119.99756 * 4 2 1 9 9 N 1.39469 * 126.22059 * 359.96101 * 8 4 2 10 10 C 1.34782 * 120.00103 * 179.97438 * 9 8 4 11 11 O 1.21290 * 119.99750 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00135 * 179.97438 * 10 9 8 13 13 H 1.09005 * 109.46677 * 59.99995 * 12 10 9 14 14 C 1.52999 * 109.47040 * 300.00406 * 12 10 9 15 15 N 1.46894 * 109.47300 * 180.02562 * 12 10 9 16 16 C 1.46897 * 110.99845 * 203.33554 * 15 12 10 17 17 H 1.09001 * 109.47309 * 326.03257 * 16 15 12 18 18 C 1.53002 * 109.46994 * 206.03658 * 16 15 12 19 19 C 1.50703 * 109.47459 * 86.03866 * 16 15 12 20 20 H 1.08001 * 119.99584 * 359.97438 * 19 16 15 21 21 C 1.37873 * 120.00224 * 180.02562 * 19 16 15 22 22 N 1.31521 * 119.99872 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 120.00054 * 179.97438 * 21 19 16 24 24 H 1.48493 * 109.46903 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47221 * 119.99950 * 23 21 19 26 26 H 1.48503 * 109.46659 * 239.99851 * 23 21 19 27 27 H 1.09003 * 109.46969 * 299.99693 * 1 2 3 28 28 H 1.08999 * 109.47669 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47219 * 59.99160 * 1 2 3 30 30 H 1.09003 * 109.46498 * 240.00555 * 2 1 3 31 31 H 1.09003 * 109.46942 * 60.00827 * 3 2 1 32 32 H 1.08999 * 109.46700 * 180.02562 * 3 2 1 33 33 H 1.08992 * 109.47474 * 300.00393 * 3 2 1 34 34 H 1.07999 * 125.84129 * 180.10532 * 6 5 4 35 35 H 1.08001 * 126.08787 * 179.72468 * 7 6 5 36 36 H 0.97001 * 119.99997 * 0.02562 * 9 8 4 37 37 H 1.09000 * 109.47340 * 64.82137 * 14 12 10 38 38 H 1.09003 * 109.47181 * 184.81479 * 14 12 10 39 39 H 1.09001 * 109.46901 * 304.81905 * 14 12 10 40 40 H 1.00904 * 110.99541 * 327.28595 * 15 12 10 41 41 H 1.08997 * 109.47242 * 174.04050 * 18 16 15 42 42 H 1.09002 * 109.46684 * 294.03806 * 18 16 15 43 43 H 1.08994 * 109.47389 * 54.03986 * 18 16 15 44 44 H 0.96996 * 119.99594 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6908 1.1961 5 7 1.7643 -0.3209 2.5229 6 6 2.3631 -1.1762 3.3114 7 6 3.0268 -2.1156 2.5175 8 6 2.7991 -1.7951 1.2144 9 7 3.2830 -2.4807 0.1005 10 6 4.0559 -3.5727 0.2646 11 8 4.3301 -3.9593 1.3810 12 6 4.5783 -4.3139 -0.9390 13 1 5.1935 -3.6437 -1.5396 14 6 3.4021 -4.8163 -1.7788 15 7 5.3873 -5.4575 -0.4968 16 6 6.3387 -5.8640 -1.5397 17 1 5.8919 -5.7048 -2.5211 18 6 6.6800 -7.3456 -1.3691 19 6 7.5961 -5.0419 -1.4208 20 1 7.6800 -4.2921 -0.6480 21 6 8.6390 -5.2463 -2.2991 22 7 8.5366 -6.1590 -3.2405 23 14 10.1974 -4.2268 -2.1521 24 1 10.0616 -3.2755 -1.0200 25 1 11.3551 -5.1244 -1.9088 26 1 10.4141 -3.4696 -3.4111 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5140 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.6768 1.9562 0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 2.3508 -1.1568 4.3912 35 1 3.6158 -2.9475 2.8744 36 1 3.0640 -2.1713 -0.7924 37 1 2.8508 -3.9649 -2.1779 38 1 3.7770 -5.4245 -2.6020 39 1 2.7407 -5.4172 -1.1547 40 1 5.8651 -5.2497 0.3674 41 1 7.3012 -7.6737 -2.2025 42 1 7.2217 -7.4883 -0.4340 43 1 5.7604 -7.9304 -1.3492 44 1 9.2705 -6.3030 -3.8582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:53 Heat of formation + Delta-G solvation = 43.521489 kcal Electronic energy + Delta-G solvation = -24103.431761 eV Core-core repulsion = 20671.718396 eV Total energy + Delta-G solvation = -3431.713366 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.53927 -39.60005 -36.07717 -35.86586 -34.78085 -33.02573 -30.75862 -30.06296 -28.70002 -27.61597 -27.24588 -25.09579 -24.11895 -23.15699 -21.55325 -20.15266 -19.88168 -19.45174 -18.20238 -16.91530 -16.29822 -15.70533 -15.42629 -14.99503 -14.88450 -14.70928 -14.52245 -13.89203 -13.75725 -13.23344 -13.10015 -12.99793 -12.58349 -12.49787 -12.30158 -12.05668 -11.95150 -11.70019 -11.59322 -11.38987 -11.29407 -11.03976 -10.93166 -10.81316 -10.57571 -10.32493 -10.14077 -10.03555 -9.46525 -9.13914 -8.99039 -8.47443 -8.02648 -7.44302 -6.07374 -4.19453 1.76768 2.09549 2.72538 3.03713 3.13828 3.22110 3.31307 3.35419 4.15957 4.34826 4.57413 4.60133 4.72173 4.89992 5.06168 5.20701 5.21350 5.26040 5.33712 5.40285 5.49703 5.53690 5.65630 5.72225 5.82045 5.85658 5.92688 6.02095 6.21948 6.24650 6.49680 6.81194 6.83589 6.99691 7.10676 7.22597 7.27014 7.44219 7.69365 7.80064 7.99035 8.06450 8.14938 8.21624 8.55441 8.92472 9.49109 10.94332 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.003616 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.115239 B = 7742.352208 C = 8000.107511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 C -0.160 4.160 4 N -0.385 5.385 5 N -0.296 5.296 6 C 0.057 3.943 7 C -0.285 4.285 8 C 0.312 3.688 9 N -0.655 5.655 10 C 0.524 3.476 11 O -0.494 6.494 12 C 0.079 3.921 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.673 5.673 16 C 0.208 3.792 17 H 0.035 0.965 18 C -0.122 4.122 19 C -0.549 4.549 20 H 0.054 0.946 21 C 0.070 3.930 22 N -0.885 5.885 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.284 1.284 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.183 0.817 35 H 0.172 0.828 36 H 0.408 0.592 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.345 0.655 41 H 0.079 0.921 42 H 0.027 0.973 43 H 0.015 0.985 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.922 11.438 3.165 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 C -0.218 4.218 4 N -0.175 5.175 5 N -0.118 5.118 6 C -0.129 4.129 7 C -0.317 4.317 8 C 0.093 3.907 9 N -0.304 5.304 10 C 0.311 3.689 11 O -0.365 6.365 12 C -0.035 4.035 13 H 0.096 0.904 14 C -0.192 4.192 15 N -0.307 5.307 16 C 0.100 3.900 17 H 0.053 0.947 18 C -0.181 4.181 19 C -0.589 4.589 20 H 0.072 0.928 21 C -0.133 4.133 22 N -0.523 5.523 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.210 1.210 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.200 0.800 35 H 0.189 0.811 36 H 0.243 0.757 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.165 0.835 41 H 0.098 0.902 42 H 0.046 0.954 43 H 0.034 0.966 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.810 11.630 3.426 19.924 hybrid contribution 2.069 0.780 -0.450 2.257 sum -13.741 12.410 2.976 18.753 Atomic orbital electron populations 1.22122 0.93151 1.03018 1.03422 1.21203 0.95745 0.94037 0.83588 1.22125 1.01893 0.94368 1.03418 1.48801 1.41229 1.21372 1.06050 1.77318 1.25608 1.23601 0.85281 1.23743 0.96084 0.93008 1.00035 1.21707 1.13220 1.07509 0.89252 1.18155 0.94624 0.88417 0.89541 1.43184 1.51402 1.28711 1.07060 1.21410 0.76543 0.78402 0.92535 1.90610 1.55217 1.64774 1.25882 1.21357 0.96695 0.93755 0.91660 0.90393 1.21770 0.96503 1.00809 1.00145 1.61017 1.29266 1.31994 1.08438 1.19243 0.88252 0.93027 0.89464 0.94683 1.21655 0.98288 0.96772 1.01376 1.21886 1.01337 1.20235 1.15397 0.92767 1.24912 0.98350 0.95061 0.95010 1.69904 1.32309 1.32437 1.17609 0.86598 0.83559 0.80332 0.77889 1.19884 1.20818 1.21019 0.90920 0.92072 0.90741 0.89095 0.90906 0.92033 0.90727 0.79997 0.81054 0.75665 0.93387 0.90566 0.92050 0.83486 0.90244 0.95373 0.96556 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.46 37.16 0.35 -0.87 16 2 C 0.16 1.40 3.69 -67.93 -0.25 1.15 16 3 C -0.16 -1.29 9.45 37.16 0.35 -0.94 16 4 N -0.39 -4.83 3.29 -53.90 -0.18 -5.01 16 5 N -0.30 -4.04 12.42 30.60 0.38 -3.66 16 6 C 0.06 0.76 12.01 -17.41 -0.21 0.55 16 7 C -0.29 -4.37 9.65 -39.78 -0.38 -4.76 16 8 C 0.31 4.48 7.66 -153.17 -1.17 3.30 16 9 N -0.65 -8.66 5.32 -11.46 -0.06 -8.72 16 10 C 0.52 8.63 7.14 -10.98 -0.08 8.55 16 11 O -0.49 -9.58 12.81 5.55 0.07 -9.51 16 12 C 0.08 1.36 2.84 -68.87 -0.20 1.17 16 13 H 0.08 1.40 7.69 -51.93 -0.40 1.00 16 14 C -0.13 -1.90 9.26 37.16 0.34 -1.56 16 15 N -0.67 -14.08 5.91 -102.17 -0.60 -14.69 16 16 C 0.21 4.98 2.38 -68.86 -0.16 4.82 16 17 H 0.04 0.89 6.98 -51.93 -0.36 0.53 16 18 C -0.12 -2.95 9.21 37.16 0.34 -2.60 16 19 C -0.55 -14.48 8.31 -34.44 -0.29 -14.77 16 20 H 0.05 1.45 7.73 -52.49 -0.41 1.04 16 21 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 22 N -0.88 -24.31 11.39 55.43 0.63 -23.68 16 23 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.65 6.81 -51.93 -0.35 0.30 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.18 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.17 2.91 5.83 -52.49 -0.31 2.60 16 36 H 0.41 4.06 7.04 -40.82 -0.29 3.77 16 37 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16 38 H 0.08 1.18 7.26 -51.93 -0.38 0.80 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.35 7.71 7.17 -39.29 -0.28 7.42 16 41 H 0.08 2.06 6.25 -51.93 -0.32 1.73 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -30.58 358.47 -7.69 -38.27 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.86 Total: 10.01 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.45 Total: -4.20 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.17 Total: -55.76 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.58 -7.69 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.790 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds