Wall clock time and date at job start Fri Apr 10 2020 20:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99977 * 2 1 4 4 C 1.50700 * 120.00260 * 180.02562 * 2 1 3 5 5 N 1.46501 * 109.47447 * 96.86311 * 4 2 1 6 6 C 1.36734 * 127.13979 * 83.54206 * 5 4 2 7 7 C 1.50704 * 126.34405 * 0.02562 * 6 5 4 8 8 H 1.09004 * 109.46897 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.47492 * 240.00359 * 7 6 5 10 10 C 1.53004 * 109.46955 * 120.00195 * 7 6 5 11 11 C 1.50700 * 109.47255 * 185.00083 * 10 7 6 12 12 H 1.08001 * 119.99599 * 359.72467 * 11 10 7 13 13 C 1.37876 * 119.99782 * 180.02562 * 11 10 7 14 14 N 1.31511 * 120.00135 * 359.72538 * 13 11 10 15 15 Si 1.86805 * 119.99572 * 179.72747 * 13 11 10 16 16 H 1.48497 * 109.47133 * 89.99983 * 15 13 11 17 17 H 1.48507 * 109.46598 * 209.99718 * 15 13 11 18 18 H 1.48496 * 109.46976 * 329.99547 * 15 13 11 19 19 N 1.30290 * 107.30931 * 180.28446 * 6 5 4 20 20 N 1.28534 * 110.05270 * 359.56265 * 19 6 5 21 21 C 1.31221 * 109.85549 * 0.44925 * 20 19 6 22 22 N 1.38583 * 126.46662 * 179.70126 * 21 20 19 23 23 C 1.46898 * 111.00005 * 330.64722 * 22 21 20 24 24 O 1.46306 * 110.99468 * 206.69649 * 22 21 20 25 25 C 1.42895 * 114.00302 * 235.09820 * 24 22 21 26 26 H 1.07996 * 120.00216 * 6.51440 * 1 2 3 27 27 H 1.08004 * 119.99570 * 186.51618 * 1 2 3 28 28 H 1.09000 * 109.46728 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47224 * 300.00502 * 3 2 1 30 30 H 1.09002 * 109.46694 * 60.00590 * 3 2 1 31 31 H 1.09001 * 109.46763 * 336.86521 * 4 2 1 32 32 H 1.08998 * 109.47407 * 216.86476 * 4 2 1 33 33 H 1.08992 * 109.47244 * 180.02562 * 9 7 6 34 34 H 1.08997 * 109.46861 * 300.00138 * 9 7 6 35 35 H 1.09000 * 109.47087 * 60.00104 * 9 7 6 36 36 H 1.09003 * 109.47095 * 64.99852 * 10 7 6 37 37 H 1.09004 * 109.47261 * 305.00419 * 10 7 6 38 38 H 0.96998 * 119.99977 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.46774 * 60.00660 * 23 22 21 40 40 H 1.09001 * 109.46680 * 180.02562 * 23 22 21 41 41 H 1.08993 * 109.47176 * 300.00428 * 23 22 21 42 42 H 1.09008 * 109.46809 * 303.50481 * 25 24 22 43 43 H 1.09003 * 109.46960 * 63.50026 * 25 24 22 44 44 H 1.08992 * 109.47529 * 183.50436 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4507 -1.6449 -1.3720 6 6 3.5465 -1.1962 -2.0557 7 6 4.5970 -0.2486 -1.5363 8 1 4.3550 0.0362 -0.5124 9 6 4.6372 1.0013 -2.4179 10 6 5.9633 -0.9367 -1.5645 11 6 6.9926 -0.0358 -0.9321 12 1 6.7023 0.9327 -0.5526 13 6 8.3062 -0.4455 -0.8438 14 7 8.6597 -1.6247 -1.3065 15 14 9.5835 0.6745 -0.0669 16 1 9.6601 0.4015 1.3908 17 1 10.9081 0.4203 -0.6884 18 1 9.1978 2.0917 -0.2856 19 7 3.5113 -1.7353 -3.2413 20 7 2.4805 -2.4955 -3.3493 21 6 1.7922 -2.4745 -2.2323 22 7 0.6179 -3.1640 -1.9753 23 6 -0.1536 -3.3678 -3.2086 24 8 -0.1835 -2.4756 -0.9632 25 6 -0.5280 -3.2907 0.1588 26 1 -0.5400 0.9292 -0.1061 27 1 -0.5400 -0.9293 0.1062 28 1 3.1351 1.1059 -0.0005 29 1 1.8001 1.8767 -0.8899 30 1 1.8002 1.8766 0.8901 31 1 1.4268 -2.0924 0.4028 32 1 2.9572 -1.2089 0.6160 33 1 5.3973 1.6863 -2.0424 34 1 4.8794 0.7161 -3.4416 35 1 3.6639 1.4915 -2.3978 36 1 6.2454 -1.1422 -2.5971 37 1 5.9099 -1.8733 -1.0093 38 1 9.5837 -1.9130 -1.2440 39 1 0.4411 -3.9429 -3.9184 40 1 -1.0702 -3.9108 -2.9782 41 1 -0.4044 -2.4007 -3.6443 42 1 -1.0531 -4.1813 -0.1868 43 1 0.3794 -3.5855 0.6859 44 1 -1.1730 -2.7272 0.8329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263338310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:28 Heat of formation + Delta-G solvation = 108.318865 kcal Electronic energy + Delta-G solvation = -25168.174048 eV Core-core repulsion = 21739.270507 eV Total energy + Delta-G solvation = -3428.903541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.61514 -38.04222 -36.80869 -35.20322 -34.12842 -33.17716 -32.16793 -28.72158 -27.68167 -27.13395 -26.86059 -26.69836 -25.18934 -24.07764 -21.93535 -20.94822 -19.54425 -18.72419 -17.53916 -16.74620 -16.50791 -16.11895 -15.98597 -15.31584 -14.91065 -14.52135 -14.36784 -14.02323 -13.76167 -13.41962 -13.29609 -13.01469 -12.81300 -12.39695 -12.07719 -12.03778 -11.80640 -11.75120 -11.39430 -11.32500 -11.07324 -10.93426 -10.69460 -10.55984 -10.46643 -10.35177 -10.10195 -9.82034 -9.75795 -9.38673 -9.24465 -9.09661 -8.35731 -7.98341 -5.99304 -4.03098 1.51454 1.90494 2.51946 2.86433 3.31554 3.37559 3.38999 3.41252 4.36234 4.44544 4.61839 4.67060 4.94600 5.00893 5.06116 5.14966 5.19402 5.21119 5.27720 5.35667 5.37568 5.45356 5.49024 5.62056 5.66245 5.73279 5.84418 5.92224 6.05806 6.08345 6.17133 6.26367 6.43646 6.60715 6.67573 6.72128 6.76256 6.91261 7.05078 7.33350 7.63592 7.79797 7.99884 8.35633 9.02408 9.19295 9.60458 11.11762 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.004506 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.441612 B = 6211.891564 C = 6780.013117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.146 4.146 3 C -0.129 4.129 4 C 0.142 3.858 5 N -0.469 5.469 6 C 0.221 3.779 7 C -0.003 4.003 8 H 0.075 0.925 9 C -0.126 4.126 10 C 0.037 3.963 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 N -0.280 5.280 20 N -0.302 5.302 21 C 0.320 3.680 22 N -0.272 5.272 23 C 0.026 3.974 24 O -0.251 6.251 25 C 0.024 3.976 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.014 0.986 38 H 0.261 0.739 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.543 0.288 4.506 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.185 4.185 4 C 0.020 3.980 5 N -0.164 5.164 6 C -0.047 4.047 7 C -0.024 4.024 8 H 0.093 0.907 9 C -0.185 4.185 10 C -0.001 4.001 11 C -0.559 4.559 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.198 1.198 19 N -0.119 5.119 20 N -0.150 5.150 21 C -0.037 4.037 22 N -0.041 5.041 23 C -0.122 4.122 24 O -0.249 6.249 25 C -0.073 4.073 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.032 -0.465 3.299 20.307 hybrid contribution 0.093 1.148 1.609 1.978 sum -19.939 0.683 4.907 20.546 Atomic orbital electron populations 1.24038 0.95277 1.02173 0.98674 1.21826 0.95607 0.95237 1.02031 1.21056 1.01426 0.94099 1.01917 1.20923 1.00915 0.96038 0.80114 1.46347 1.20455 1.35821 1.13810 1.25594 0.90050 0.99734 0.89283 1.20084 0.92566 0.91991 0.97758 0.90660 1.21697 1.00035 0.96320 1.00406 1.19132 0.87130 0.95166 0.98695 1.21126 0.92934 1.02559 1.39238 0.92343 1.24994 0.98551 0.95093 0.95551 1.69980 1.17864 1.19060 1.45946 0.86618 0.81132 0.81093 0.79292 1.20768 1.21227 1.19793 1.74043 1.13462 1.08676 1.15695 1.74567 1.04397 1.19647 1.16345 1.22851 0.95119 0.96593 0.89096 1.64499 0.98152 1.32828 1.08609 1.22752 0.98636 1.02277 0.88522 1.90945 1.70449 1.32986 1.30530 1.22811 1.00001 0.96796 0.87724 0.88405 0.87060 0.90490 0.91632 0.91312 0.87955 0.88276 0.90635 0.92048 0.94861 0.94924 0.96785 0.92919 0.87521 0.89732 0.93171 0.92561 0.93043 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 13.09 29.01 0.38 -1.36 16 2 C -0.15 -1.79 5.63 -101.06 -0.57 -2.36 16 3 C -0.13 -1.54 10.01 36.01 0.36 -1.18 16 4 C 0.14 1.96 5.20 -5.19 -0.03 1.93 16 5 N -0.47 -8.20 2.79 -115.37 -0.32 -8.52 16 6 C 0.22 4.51 6.58 -154.02 -1.01 3.50 16 7 C 0.00 -0.06 2.34 -91.77 -0.21 -0.28 16 8 H 0.08 1.42 4.75 -51.93 -0.25 1.18 16 9 C -0.13 -2.40 8.89 37.16 0.33 -2.07 16 10 C 0.04 0.95 4.43 -27.88 -0.12 0.83 16 11 C -0.52 -14.05 8.41 -34.44 -0.29 -14.34 16 12 H 0.06 1.49 7.05 -52.49 -0.37 1.12 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 N -0.28 -6.30 12.18 32.99 0.40 -5.90 16 20 N -0.30 -6.19 11.46 30.32 0.35 -5.84 16 21 C 0.32 5.65 7.82 -318.87 -2.49 3.16 16 22 N -0.27 -3.76 5.14 -68.05 -0.35 -4.11 16 23 C 0.03 0.29 9.76 60.06 0.59 0.88 16 24 O -0.25 -2.85 5.87 -13.93 -0.08 -2.93 16 25 C 0.02 0.18 9.85 101.05 1.00 1.18 16 26 H 0.10 0.93 8.05 -52.49 -0.42 0.51 16 27 H 0.11 1.09 3.98 -52.48 -0.21 0.88 16 28 H 0.08 1.03 5.02 -51.93 -0.26 0.77 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.22 4.25 -51.93 -0.22 1.00 16 32 H 0.10 1.36 7.52 -51.93 -0.39 0.97 16 33 H 0.07 1.43 6.94 -51.93 -0.36 1.07 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.11 1.24 7.88 -51.93 -0.41 0.83 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 43 H 0.05 0.42 6.97 -51.93 -0.36 0.06 16 44 H 0.10 0.52 7.54 -51.93 -0.39 0.13 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -33.04 350.53 -7.76 -40.80 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.58 Total: -0.44 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.17 Total: -8.53 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.81 Total: -50.31 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.08 Total: -2.93 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.04 -7.76 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263338310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.123 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds