Wall clock time and date at job start Fri Apr 10 2020 20:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47045 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47426 * 119.99572 * 10 8 6 13 13 H 1.48501 * 109.46833 * 239.99815 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.46895 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.47360 * 55.00252 * 19 18 16 21 21 C 1.53001 * 109.47412 * 294.99853 * 19 18 16 22 22 N 1.46505 * 109.47166 * 174.99953 * 19 18 16 23 23 C 1.34952 * 126.03672 * 84.99981 * 22 19 18 24 24 C 1.35307 * 107.74707 * 179.97438 * 23 22 19 25 25 C 1.39871 * 107.91993 * 359.97438 * 24 23 22 26 26 N 1.30835 * 108.20417 * 359.74026 * 25 24 23 27 27 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 28 28 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 30 30 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 31 31 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 35 35 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 36 36 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 37 37 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 38 38 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 39 39 H 1.09006 * 109.46602 * 60.00578 * 21 19 18 40 40 H 1.09006 * 109.47262 * 179.97438 * 21 19 18 41 41 H 1.08999 * 109.47184 * 300.00507 * 21 19 18 42 42 H 1.08002 * 126.12492 * 359.95933 * 23 22 19 43 43 H 1.08001 * 126.04360 * 180.02562 * 24 23 22 44 44 H 1.08005 * 125.89644 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 2.8694 -1.5951 -6.3785 12 1 0.8768 -0.5749 -7.3112 13 1 2.9444 0.6868 -7.1952 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.1060 -0.3568 6.1426 20 1 3.1811 -0.5151 6.0582 21 6 1.4004 -1.7081 6.2738 22 7 1.8238 0.4584 7.3267 23 6 0.6672 0.4753 8.0218 24 6 0.8105 1.3551 9.0397 25 6 2.0990 1.8940 8.9645 26 7 2.7094 1.3529 7.9415 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6054 -1.7198 -1.2951 31 1 3.1263 -0.7995 -1.2055 32 1 1.1488 0.8594 -2.3517 33 1 0.6804 1.9069 -5.4839 34 1 1.6053 -1.7197 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1487 0.8594 2.3518 37 1 2.0324 1.3633 4.8474 38 1 0.5109 0.4440 4.9368 39 1 1.6104 -2.3147 5.3928 40 1 1.7632 -2.2226 7.1637 41 1 0.3252 -1.5498 6.3581 42 1 -0.2149 -0.1088 7.8043 43 1 0.0625 1.5977 9.7800 44 1 2.5190 2.6272 9.6372 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:52 Heat of formation + Delta-G solvation = 40.852498 kcal Electronic energy + Delta-G solvation = -22790.775980 eV Core-core repulsion = 19358.946878 eV Total energy + Delta-G solvation = -3431.829102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51857 -40.02664 -37.10435 -35.60368 -34.43846 -32.60498 -30.73972 -30.23295 -29.94416 -28.46085 -26.43213 -25.26300 -23.67202 -22.42781 -21.33769 -20.83365 -20.25764 -19.73582 -17.90027 -17.23900 -16.62308 -16.25985 -16.03015 -15.16693 -15.02038 -14.74448 -14.50436 -14.09872 -13.95769 -13.63803 -13.44393 -13.22125 -13.08339 -12.99482 -12.71370 -12.45370 -12.15519 -12.03851 -11.84487 -11.58163 -11.10493 -10.95803 -10.93905 -10.75528 -10.62311 -10.47725 -10.13351 -9.97262 -9.73728 -9.67527 -9.14985 -8.91337 -8.89666 -6.95622 -5.80156 -3.08684 1.61236 2.10733 2.40754 2.58672 3.10994 3.41506 3.47540 3.49558 4.09062 4.27092 4.49127 4.56220 4.57003 4.68104 4.79804 5.00164 5.01206 5.06541 5.15504 5.31726 5.32646 5.39928 5.41506 5.54728 5.58814 5.73126 5.73989 5.82116 5.89280 5.92478 6.05566 6.17989 6.32584 6.37377 6.38774 6.60051 6.72346 6.73960 6.81435 7.31872 7.45007 7.68220 8.01097 8.38912 9.50319 10.07230 10.41875 11.42868 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.002111 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.331689 B =13262.232578 C =13481.588029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.518 3.482 17 O -0.540 6.540 18 C -0.155 4.155 19 C 0.176 3.824 20 H 0.112 0.888 21 C -0.168 4.168 22 N -0.366 5.366 23 C 0.055 3.945 24 C -0.278 4.278 25 C 0.042 3.958 26 N -0.297 5.297 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.171 0.829 43 H 0.146 0.854 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -0.853 27.027 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.372 5.372 16 C 0.303 3.697 17 O -0.418 6.418 18 C -0.196 4.196 19 C 0.074 3.926 20 H 0.130 0.870 21 C -0.226 4.226 22 N -0.149 5.149 23 C -0.091 4.091 24 C -0.307 4.307 25 C -0.144 4.144 26 N -0.118 5.118 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.236 0.764 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.189 0.811 43 H 0.164 0.836 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.405 -1.848 26.152 26.255 hybrid contribution -1.059 0.578 -0.531 1.318 sum -2.464 -1.270 25.621 25.771 Atomic orbital electron populations 1.21791 0.94642 1.01933 1.01506 1.21560 0.96723 1.00535 0.94197 0.90517 1.20574 0.96635 0.94203 0.85366 1.42345 1.66962 1.27654 1.00598 1.19284 1.28538 1.05540 0.83615 0.91077 1.24746 1.00966 0.97474 0.97908 1.69664 1.43339 1.16894 1.28398 0.86101 0.77590 0.77854 0.84567 1.20526 1.21866 1.21865 1.21454 1.00265 0.95252 0.82790 1.46064 1.57355 1.27900 1.05916 1.20176 0.79512 0.85553 0.84441 1.90701 1.40056 1.24455 1.86593 1.22078 1.03794 1.01178 0.92590 1.20939 1.03122 0.88747 0.79803 0.87022 1.22333 1.00037 0.95171 1.05088 1.48978 1.09776 1.33081 1.23068 1.22523 0.91823 1.00501 0.94264 1.21521 0.99448 1.05484 1.04284 1.23908 0.93918 1.00037 0.96575 1.77407 1.16448 1.07002 1.10911 0.91099 0.92801 0.93967 0.95986 0.96110 0.78213 0.93560 0.91186 0.91203 0.76367 0.87937 0.88223 0.87823 0.91601 0.92090 0.81146 0.83646 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.94 37.15 0.33 -1.64 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 4 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 5 N -0.73 -18.05 5.33 -59.91 -0.32 -18.37 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 15 N -0.72 -7.43 5.28 -60.30 -0.32 -7.75 16 16 C 0.52 5.53 7.55 -10.99 -0.08 5.45 16 17 O -0.54 -7.49 13.97 5.55 0.08 -7.41 16 18 C -0.16 -1.24 5.50 -27.88 -0.15 -1.39 16 19 C 0.18 1.57 3.05 -67.93 -0.21 1.36 16 20 H 0.11 1.19 7.95 -51.93 -0.41 0.77 16 21 C -0.17 -1.30 8.58 37.16 0.32 -0.98 16 22 N -0.37 -3.49 3.53 -54.86 -0.19 -3.69 16 23 C 0.06 0.42 10.59 -17.22 -0.18 0.24 16 24 C -0.28 -2.14 10.80 -40.02 -0.43 -2.57 16 25 C 0.04 0.37 12.03 -17.37 -0.21 0.16 16 26 N -0.30 -3.35 12.58 30.63 0.39 -2.96 16 27 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 33 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.32 7.66 -40.82 -0.31 3.01 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.36 7.16 -51.93 -0.37 -0.01 16 42 H 0.17 0.81 7.26 -52.49 -0.38 0.43 16 43 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.18 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -33.43 363.03 -7.34 -40.77 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.01 Total: 7.72 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.13 Total: -3.86 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.28 Total: -59.98 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.41 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.43 -7.34 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.621 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds