Wall clock time and date at job start Fri Apr 10 2020 20:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 C 1.53001 * 109.47359 * 240.00539 * 2 1 3 5 5 C 1.50702 * 109.47365 * 64.99846 * 4 2 1 6 6 O 1.21280 * 119.99885 * 0.02562 * 5 4 2 7 7 N 1.34769 * 119.99882 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99831 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47149 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.47250 * 304.99884 * 9 8 7 11 11 C 1.53001 * 109.47347 * 65.00153 * 9 8 7 12 12 C 1.52997 * 109.47049 * 184.99765 * 9 8 7 13 13 N 1.46506 * 109.47289 * 174.99938 * 12 9 8 14 14 C 1.36930 * 120.00258 * 180.02562 * 13 12 9 15 15 H 1.08004 * 119.99823 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00439 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99225 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00268 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47411 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46826 * 120.00327 * 18 16 14 21 21 H 1.48495 * 109.47136 * 239.99966 * 18 16 14 22 22 N 1.46497 * 109.47167 * 120.00527 * 2 1 3 23 23 C 1.34940 * 126.04072 * 34.71478 * 22 2 1 24 24 C 1.35322 * 107.75264 * 179.84438 * 23 22 2 25 25 C 1.39873 * 107.91448 * 0.42028 * 24 23 22 26 26 N 1.30841 * 108.20498 * 359.73826 * 25 24 23 27 27 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47403 * 299.99858 * 1 2 3 29 29 H 1.09002 * 109.47017 * 59.99736 * 1 2 3 30 30 H 1.09005 * 109.46584 * 304.99646 * 4 2 1 31 31 H 1.09000 * 109.47396 * 185.00524 * 4 2 1 32 32 H 0.97002 * 120.00609 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.47509 * 59.99746 * 8 7 5 34 34 H 1.09005 * 109.47035 * 299.99866 * 8 7 5 35 35 H 1.09002 * 109.47620 * 59.99538 * 11 9 8 36 36 H 1.09000 * 109.47757 * 180.02562 * 11 9 8 37 37 H 1.09004 * 109.46683 * 300.00277 * 11 9 8 38 38 H 1.09001 * 109.47289 * 54.99809 * 12 9 8 39 39 H 1.09004 * 109.47261 * 295.00065 * 12 9 8 40 40 H 0.97001 * 119.99251 * 0.02562 * 13 12 9 41 41 H 0.97000 * 119.99950 * 179.97438 * 17 16 14 42 42 H 1.08005 * 126.12258 * 359.97438 * 23 22 2 43 43 H 1.07997 * 126.04357 * 180.16458 * 24 23 22 44 44 H 1.07996 * 125.89580 * 179.72319 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0117 1.0875 -2.3633 7 7 1.9845 -0.3917 -3.7001 8 6 1.5975 0.3653 -4.8932 9 6 2.1074 -0.3559 -6.1425 10 1 3.1826 -0.5135 -6.0577 11 6 1.4028 -1.7076 -6.2745 12 6 1.8128 0.4956 -7.3790 13 7 2.4056 -0.1368 -8.5601 14 6 2.2712 0.4490 -9.7905 15 1 1.7285 1.3774 -9.8902 16 6 2.8333 -0.1499 -10.9096 17 7 3.4950 -1.2812 -10.7879 18 14 2.6493 0.6488 -12.5881 19 1 1.8668 1.9040 -12.4560 20 1 3.9931 0.9593 -13.1384 21 1 1.9422 -0.2817 -13.5042 22 7 2.0183 -0.6907 1.1961 23 6 1.4373 -1.7526 1.7924 24 6 2.1966 -2.0930 2.8596 25 6 3.2735 -1.2026 2.9230 26 7 3.1677 -0.3616 1.9263 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6054 -1.7197 -1.2952 31 1 3.1263 -0.7994 -1.2056 32 1 2.4878 -1.2159 -3.7909 33 1 2.0327 1.3635 -4.8473 34 1 0.5112 0.4443 -4.9369 35 1 0.3275 -1.5501 -6.3594 36 1 1.7664 -2.2216 -7.1643 37 1 1.6127 -2.3142 -5.3936 38 1 2.2402 1.4895 -7.2460 39 1 0.7344 0.5790 -7.5142 40 1 2.8932 -0.9705 -8.4704 41 1 3.8875 -1.6999 -11.5699 42 1 0.5301 -2.2443 1.4737 43 1 2.0029 -2.9056 3.5441 44 1 4.0568 -1.2082 3.6664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:55 Heat of formation + Delta-G solvation = 40.857461 kcal Electronic energy + Delta-G solvation = -22790.693641 eV Core-core repulsion = 19358.864755 eV Total energy + Delta-G solvation = -3431.828887 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51764 -40.02697 -37.10395 -35.60427 -34.43848 -32.60521 -30.74081 -30.23132 -29.94376 -28.46059 -26.43228 -25.26296 -23.67274 -22.42772 -21.33637 -20.83313 -20.25701 -19.73611 -17.90148 -17.23926 -16.62386 -16.26102 -16.03006 -15.16458 -15.02031 -14.74341 -14.50532 -14.09725 -13.96058 -13.63797 -13.44378 -13.21943 -13.08413 -12.99587 -12.71181 -12.45375 -12.15572 -12.03889 -11.84444 -11.58268 -11.10505 -10.95713 -10.93826 -10.75551 -10.62293 -10.47766 -10.13357 -9.97287 -9.73731 -9.67515 -9.14998 -8.91324 -8.89547 -6.95625 -5.80168 -3.08648 1.61212 2.10759 2.40823 2.58640 3.11008 3.41511 3.47546 3.49577 4.09127 4.27023 4.49132 4.56232 4.57006 4.68144 4.79778 5.00174 5.01200 5.06566 5.15485 5.31753 5.32695 5.39894 5.41495 5.54724 5.58769 5.73126 5.73962 5.82084 5.89259 5.92469 6.05584 6.17965 6.32526 6.37380 6.38762 6.60017 6.72303 6.73983 6.81437 7.31937 7.44953 7.68232 8.01129 8.38934 9.50330 10.07228 10.41929 11.42888 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.042995 B = 0.002111 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.080580 B =13260.782576 C =13480.455237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.112 0.888 4 C -0.155 4.155 5 C 0.518 3.482 6 O -0.540 6.540 7 N -0.721 5.721 8 C 0.126 3.874 9 C -0.111 4.111 10 H 0.076 0.924 11 C -0.141 4.141 12 C 0.160 3.840 13 N -0.731 5.731 14 C -0.239 4.239 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 N -0.366 5.366 23 C 0.055 3.945 24 C -0.278 4.278 25 C 0.042 3.958 26 N -0.297 5.297 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.402 0.598 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.171 0.829 43 H 0.146 0.854 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -3.705 26.591 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.130 0.870 4 C -0.196 4.196 5 C 0.303 3.697 6 O -0.418 6.418 7 N -0.372 5.372 8 C 0.002 3.998 9 C -0.130 4.130 10 H 0.095 0.905 11 C -0.199 4.199 12 C 0.032 3.968 13 N -0.376 5.376 14 C -0.370 4.370 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 N -0.149 5.149 23 C -0.091 4.091 24 C -0.307 4.307 25 C -0.144 4.144 26 N -0.118 5.118 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.189 0.811 43 H 0.164 0.836 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.564 -1.749 25.805 26.264 hybrid contribution 0.071 -1.172 -0.586 1.312 sum -4.493 -2.921 25.220 25.783 Atomic orbital electron populations 1.22330 0.92084 1.03025 1.05188 1.20937 0.95313 0.96980 0.79380 0.87029 1.22082 1.04225 1.00772 0.92570 1.20174 0.79470 0.85611 0.84423 1.90699 1.40096 1.24407 1.86604 1.46064 1.57384 1.27883 1.05905 1.21456 1.00388 0.95137 0.82781 1.21559 1.00753 0.96469 0.94233 0.90515 1.21793 1.00527 0.96052 1.01499 1.20576 0.96404 0.94165 0.85638 1.42344 1.65096 1.27703 1.02412 1.19284 1.28318 1.04546 0.84828 0.91077 1.24747 1.00810 0.97525 0.98022 1.69665 1.40763 1.18860 1.29006 0.86099 0.77228 0.78367 0.84409 1.20526 1.21870 1.21864 1.48975 1.19298 1.24223 1.22401 1.22525 0.99824 0.91319 0.95441 1.21524 0.99287 1.06549 1.03385 1.23908 0.99349 0.93884 0.97290 1.77413 1.02988 1.23745 1.07629 0.92091 0.91597 0.87819 0.88224 0.87939 0.76364 0.91206 0.91181 0.92796 0.91106 0.93968 0.96111 0.95985 0.78216 0.93562 0.81145 0.83646 0.80144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 8.57 37.16 0.32 -0.98 16 2 C 0.18 1.57 3.05 -67.93 -0.21 1.36 16 3 H 0.11 1.19 7.95 -51.93 -0.41 0.77 16 4 C -0.16 -1.24 5.50 -27.88 -0.15 -1.39 16 5 C 0.52 5.53 7.55 -10.99 -0.08 5.45 16 6 O -0.54 -7.49 13.97 5.56 0.08 -7.41 16 7 N -0.72 -7.43 5.28 -60.29 -0.32 -7.75 16 8 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 9 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 10 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 11 C -0.14 -1.97 8.94 37.16 0.33 -1.64 16 12 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 13 N -0.73 -18.05 5.33 -59.90 -0.32 -18.37 16 14 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 15 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 18 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 N -0.37 -3.49 3.53 -54.87 -0.19 -3.69 16 23 C 0.06 0.42 10.59 -17.22 -0.18 0.24 16 24 C -0.28 -2.14 10.80 -40.01 -0.43 -2.57 16 25 C 0.04 0.37 12.03 -17.36 -0.21 0.16 16 26 N -0.30 -3.35 12.58 30.63 0.39 -2.96 16 27 H 0.06 0.36 7.15 -51.93 -0.37 -0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.40 3.32 7.65 -40.82 -0.31 3.01 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 37 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.38 9.85 6.85 -40.82 -0.28 9.58 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.17 0.81 7.26 -52.48 -0.38 0.43 16 43 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -33.44 363.02 -7.33 -40.77 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.01 Total: 7.72 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.13 Total: -3.86 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.28 Total: -59.99 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.41 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.44 -7.33 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.628 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds