Wall clock time and date at job start Fri Apr 10 2020 20:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47045 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47426 * 119.99572 * 10 8 6 13 13 H 1.48501 * 109.46833 * 239.99815 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.46895 * 179.97438 * 18 16 15 20 20 H 1.08997 * 109.47510 * 304.99702 * 19 18 16 21 21 C 1.53004 * 109.47413 * 65.00374 * 19 18 16 22 22 N 1.46507 * 109.47197 * 185.00157 * 19 18 16 23 23 C 1.34946 * 126.03541 * 274.71808 * 22 19 18 24 24 C 1.35316 * 107.74522 * 179.83664 * 23 22 19 25 25 C 1.39870 * 107.91807 * 0.42573 * 24 23 22 26 26 N 1.30833 * 108.20142 * 359.73451 * 25 24 23 27 27 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 28 28 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 30 30 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 31 31 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 35 35 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 36 36 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 37 37 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 38 38 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 39 39 H 1.08996 * 109.47119 * 180.02562 * 21 19 18 40 40 H 1.09005 * 109.46693 * 299.99972 * 21 19 18 41 41 H 1.09000 * 109.47144 * 59.99722 * 21 19 18 42 42 H 1.08001 * 126.12458 * 359.97438 * 23 22 19 43 43 H 1.08001 * 126.04161 * 180.15801 * 24 23 22 44 44 H 1.08002 * 125.89576 * 179.71842 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 2.8694 -1.5951 -6.3785 12 1 0.8768 -0.5749 -7.3112 13 1 2.9444 0.6868 -7.1952 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.1060 -0.3568 6.1426 20 1 1.7416 -1.3841 6.1424 21 6 3.6360 -0.3584 6.1432 22 7 1.6179 0.3341 7.3387 23 6 2.1998 1.3954 7.9354 24 6 1.4405 1.7363 9.0023 25 6 0.3628 0.8470 9.0652 26 7 0.4681 0.0061 8.0685 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6054 -1.7198 -1.2951 31 1 3.1263 -0.7995 -1.2055 32 1 1.1488 0.8594 -2.3517 33 1 0.6804 1.9069 -5.4839 34 1 1.6053 -1.7197 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1487 0.8594 2.3518 37 1 2.0324 1.3633 4.8474 38 1 0.5109 0.4440 4.9368 39 1 3.9985 -0.8731 7.0330 40 1 3.9991 -0.8725 5.2532 41 1 4.0004 0.6689 6.1434 42 1 3.1077 1.8863 7.6171 43 1 1.6348 2.5486 9.6870 44 1 -0.4209 0.8533 9.8084 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:01 Heat of formation + Delta-G solvation = 40.828104 kcal Electronic energy + Delta-G solvation = -22787.777487 eV Core-core repulsion = 19355.947328 eV Total energy + Delta-G solvation = -3431.830160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51933 -40.02628 -37.10311 -35.60278 -34.43874 -32.60434 -30.74117 -30.23236 -29.94261 -28.46055 -26.42397 -25.26418 -23.67333 -22.42754 -21.33691 -20.83190 -20.26206 -19.72629 -17.90388 -17.24045 -16.64263 -16.31366 -15.86780 -15.32500 -15.03716 -14.62712 -14.53927 -14.06207 -13.92774 -13.70036 -13.46388 -13.21861 -13.06538 -12.95083 -12.75558 -12.44201 -12.15815 -12.03873 -11.82358 -11.58358 -11.10457 -10.95886 -10.93994 -10.76024 -10.61398 -10.47728 -10.13043 -9.97513 -9.73837 -9.67547 -9.14965 -8.91423 -8.89633 -6.95725 -5.80273 -3.08799 1.61231 2.10718 2.40777 2.58617 3.11010 3.41385 3.47423 3.49439 4.09270 4.26954 4.49317 4.56178 4.57040 4.68144 4.80015 4.99359 5.02321 5.06725 5.15625 5.31474 5.33257 5.40136 5.41657 5.54640 5.58888 5.73222 5.74958 5.82083 5.90311 5.92359 6.05668 6.18611 6.33261 6.37351 6.39074 6.60525 6.72278 6.73948 6.81659 7.31893 7.44947 7.68102 8.01119 8.38798 9.50204 10.07130 10.41780 11.42749 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.043495 B = 0.002114 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.602741 B =13243.102770 C =13502.541465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.518 3.482 17 O -0.540 6.540 18 C -0.155 4.155 19 C 0.176 3.824 20 H 0.112 0.888 21 C -0.169 4.169 22 N -0.366 5.366 23 C 0.055 3.945 24 C -0.278 4.278 25 C 0.042 3.958 26 N -0.297 5.297 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.171 0.829 43 H 0.146 0.854 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 1.847 26.774 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.372 5.372 16 C 0.303 3.697 17 O -0.418 6.418 18 C -0.196 4.196 19 C 0.074 3.926 20 H 0.130 0.870 21 C -0.226 4.226 22 N -0.149 5.149 23 C -0.091 4.091 24 C -0.307 4.307 25 C -0.144 4.144 26 N -0.118 5.118 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.236 0.764 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.189 0.811 43 H 0.164 0.836 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.513 -0.097 25.988 26.032 hybrid contribution 0.111 1.280 -0.597 1.417 sum 1.624 1.183 25.391 25.471 Atomic orbital electron populations 1.21795 0.94635 1.01985 1.01514 1.21558 0.96739 1.00491 0.94189 0.90528 1.20574 0.96610 0.94225 0.85369 1.42345 1.66967 1.27649 1.00598 1.19284 1.28538 1.05537 0.83618 0.91077 1.24746 1.00963 0.97479 0.97907 1.69664 1.43336 1.16897 1.28398 0.86101 0.77595 0.77847 0.84570 1.20526 1.21862 1.21870 1.21456 1.00206 0.95315 0.82791 1.46064 1.57369 1.27889 1.05913 1.20177 0.79455 0.85624 0.84426 1.90701 1.40085 1.24415 1.86608 1.22078 1.04207 1.00791 0.92567 1.20940 0.95337 0.96946 0.79375 0.87042 1.22334 0.92070 1.03046 1.05198 1.48976 1.19247 1.24270 1.22404 1.22529 0.99820 0.91318 0.95431 1.21524 0.99265 1.06564 1.03392 1.23904 0.99349 0.93891 0.97289 1.77399 1.02994 1.23759 1.07651 0.91094 0.92784 0.93951 0.95980 0.96119 0.78213 0.93561 0.91196 0.91194 0.76366 0.88200 0.87959 0.91599 0.87806 0.92071 0.81134 0.83644 0.80146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.94 37.15 0.33 -1.69 16 2 C -0.11 -1.62 2.46 -90.62 -0.22 -1.84 16 3 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 4 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 5 N -0.73 -18.03 5.33 -59.91 -0.32 -18.35 16 6 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 10 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 15 N -0.72 -7.43 5.28 -60.30 -0.32 -7.75 16 16 C 0.52 5.53 7.55 -10.99 -0.08 5.45 16 17 O -0.54 -7.49 13.97 5.55 0.08 -7.41 16 18 C -0.16 -1.24 5.50 -27.88 -0.15 -1.39 16 19 C 0.18 1.57 3.05 -67.93 -0.21 1.36 16 20 H 0.11 1.18 7.96 -51.93 -0.41 0.77 16 21 C -0.17 -1.31 8.57 37.16 0.32 -0.99 16 22 N -0.37 -3.49 3.53 -54.86 -0.19 -3.69 16 23 C 0.06 0.43 10.59 -17.22 -0.18 0.25 16 24 C -0.28 -2.14 10.80 -40.01 -0.43 -2.57 16 25 C 0.04 0.37 12.03 -17.37 -0.21 0.16 16 26 N -0.30 -3.34 12.57 30.62 0.39 -2.95 16 27 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 33 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 3.32 7.66 -40.82 -0.31 3.01 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.99 5.95 -51.93 -0.31 0.68 16 41 H 0.06 0.37 7.15 -51.93 -0.37 -0.01 16 42 H 0.17 0.82 7.25 -52.49 -0.38 0.44 16 43 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -33.39 363.02 -7.34 -40.72 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.01 Total: 7.79 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.13 Total: -3.91 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.28 Total: -59.94 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.41 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.39 -7.34 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.549 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds