Wall clock time and date at job start Fri Apr 10 2020 20:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46746 * 2 1 4 4 C 1.53002 * 109.46552 * 240.00393 * 2 1 3 5 5 N 1.46500 * 109.46594 * 184.99776 * 4 2 1 6 6 C 1.46505 * 120.00151 * 270.00061 * 5 4 2 7 7 C 1.36944 * 120.00109 * 90.00169 * 5 4 2 8 8 H 1.08001 * 119.99561 * 22.02802 * 7 5 4 9 9 C 1.38806 * 120.00039 * 202.02517 * 7 5 4 10 10 N 1.31616 * 120.00421 * 11.43570 * 9 7 5 11 11 Si 1.86800 * 119.99724 * 191.42949 * 9 7 5 12 12 H 1.48504 * 109.47021 * 90.00520 * 11 9 7 13 13 H 1.48507 * 109.46999 * 210.00153 * 11 9 7 14 14 H 1.48494 * 109.47513 * 330.00305 * 11 9 7 15 15 N 1.46496 * 109.46954 * 120.00425 * 2 1 3 16 16 C 1.34773 * 120.00055 * 274.99527 * 15 2 1 17 17 O 1.21285 * 120.00181 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99989 * 180.02562 * 16 15 2 19 19 C 1.53002 * 109.47126 * 180.02562 * 18 16 15 20 20 C 1.50703 * 109.47126 * 179.97438 * 19 18 16 21 21 C 1.35315 * 126.12733 * 85.02712 * 20 19 18 22 22 C 1.39867 * 107.91917 * 180.24274 * 21 20 19 23 23 N 1.30840 * 108.20220 * 359.55177 * 22 21 20 24 24 N 1.34942 * 126.12422 * 264.99760 * 20 19 18 25 25 C 1.46500 * 126.04239 * 0.02562 * 24 20 19 26 26 H 1.08998 * 109.46746 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46668 * 299.99205 * 1 2 3 28 28 H 1.08995 * 109.47047 * 59.99795 * 1 2 3 29 29 H 1.09001 * 109.47193 * 304.99473 * 4 2 1 30 30 H 1.08998 * 109.46939 * 65.00195 * 4 2 1 31 31 H 1.08994 * 109.47214 * 94.04517 * 6 5 4 32 32 H 1.09002 * 109.46827 * 214.04431 * 6 5 4 33 33 H 1.09000 * 109.47123 * 334.04327 * 6 5 4 34 34 H 0.96995 * 120.00702 * 179.97438 * 10 9 7 35 35 H 0.97001 * 119.99913 * 95.00476 * 15 2 1 36 36 H 1.08998 * 109.47221 * 60.00319 * 18 16 15 37 37 H 1.09000 * 109.46939 * 299.99576 * 18 16 15 38 38 H 1.08998 * 109.47046 * 59.99922 * 19 18 16 39 39 H 1.09007 * 109.46917 * 300.00090 * 19 18 16 40 40 H 1.07997 * 126.03958 * 359.97099 * 21 20 19 41 41 H 1.07998 * 125.89502 * 179.73317 * 22 21 20 42 42 H 1.08996 * 109.47116 * 89.99769 * 25 24 20 43 43 H 1.09002 * 109.47507 * 209.99971 * 25 24 20 44 44 H 1.08999 * 109.46699 * 329.99964 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5000 -0.8263 -1.1907 6 6 4.3343 0.2342 -1.7614 7 6 4.0850 -1.9159 -0.6025 8 1 3.5321 -2.8384 -0.5044 9 6 5.3885 -1.8345 -0.1325 10 7 5.9844 -0.6643 -0.0437 11 14 6.2971 -3.3860 0.3744 12 1 7.0183 -3.9427 -0.7983 13 1 7.2720 -3.0608 1.4465 14 1 5.3234 -4.3877 0.8779 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0184 2.3571 17 8 1.8584 1.1583 2.4117 18 6 2.6500 -0.7288 3.5874 19 6 2.7009 0.2541 4.7588 20 6 3.2031 -0.4565 5.9893 21 6 4.4995 -0.6496 6.3257 22 6 4.5302 -1.3541 7.5336 23 7 3.2966 -1.5676 7.9138 24 7 2.4406 -1.0136 6.9532 25 6 0.9762 -1.0354 6.9888 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.6054 -1.7198 -1.2953 30 1 1.7516 -0.1582 -2.1370 31 1 4.5996 0.9474 -0.9810 32 1 5.2419 -0.2023 -2.1784 33 1 3.7822 0.7465 -2.5493 34 1 6.8951 -0.6074 0.2851 35 1 2.2491 -1.6318 1.1524 36 1 3.6493 -1.1206 3.3978 37 1 1.9777 -1.5510 3.8324 38 1 1.7014 0.6455 4.9483 39 1 3.3729 1.0767 4.5140 40 1 5.3585 -0.3219 5.7592 41 1 5.4188 -1.6653 8.0627 42 1 0.6138 -1.9308 6.4838 43 1 0.6379 -1.0406 8.0250 44 1 0.5873 -0.1511 6.4841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754311895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:12 Heat of formation + Delta-G solvation = 54.315662 kcal Electronic energy + Delta-G solvation = -24331.143888 eV Core-core repulsion = 20899.898593 eV Total energy + Delta-G solvation = -3431.245295 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18120 -39.16742 -36.40580 -34.14694 -33.77668 -32.90408 -31.38533 -30.22348 -28.86543 -26.73304 -26.19528 -25.63295 -24.52542 -21.80310 -21.08445 -20.30308 -19.63634 -19.47654 -17.13380 -16.68207 -16.04445 -15.64082 -15.30220 -15.17280 -14.83162 -14.29201 -13.92112 -13.73841 -13.50881 -13.28684 -12.91923 -12.78372 -12.65319 -12.48583 -12.38590 -12.12220 -11.87064 -11.70543 -11.42500 -11.29465 -10.95936 -10.88639 -10.72001 -10.54941 -10.41859 -10.26125 -10.06757 -9.85851 -9.34485 -9.11682 -8.60225 -8.42975 -8.26185 -6.81477 -5.76972 -3.23390 1.89569 2.53888 2.90506 3.29356 3.32241 3.38848 3.41585 3.90774 4.43231 4.54321 4.70940 5.02162 5.06367 5.17371 5.20511 5.30650 5.31827 5.43639 5.52290 5.58554 5.66926 5.79446 5.84464 5.91222 5.97692 6.02058 6.15150 6.18372 6.23850 6.34423 6.43921 6.49950 6.71921 6.73489 6.87840 7.04665 7.29616 7.36941 7.67445 7.75045 7.77399 8.29731 8.33870 8.94530 9.17453 9.81326 10.31321 11.27067 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.005101 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.343407 B = 5487.549765 C = 6986.757753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.257 4.257 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.687 5.687 16 C 0.519 3.481 17 O -0.565 6.565 18 C -0.133 4.133 19 C -0.039 4.039 20 C 0.093 3.907 21 C -0.271 4.271 22 C 0.046 3.954 23 N -0.307 5.307 24 N -0.375 5.375 25 C 0.099 3.901 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.045 0.955 33 H -0.005 1.005 34 H 0.253 0.747 35 H 0.404 0.596 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.181 0.819 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 -0.585 8.374 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.387 4.387 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.543 5.543 11 Si 0.726 3.274 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.205 1.205 15 N -0.335 5.335 16 C 0.305 3.695 17 O -0.446 6.446 18 C -0.174 4.174 19 C -0.078 4.078 20 C -0.034 4.034 21 C -0.300 4.300 22 C -0.139 4.139 23 N -0.128 5.128 24 N -0.158 5.158 25 C -0.042 4.042 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.014 0.986 34 H 0.063 0.937 35 H 0.239 0.761 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.167 0.833 41 H 0.198 0.802 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.855 -0.241 9.332 13.574 hybrid contribution 1.386 -0.959 -0.271 1.707 sum -8.469 -1.201 9.061 12.460 Atomic orbital electron populations 1.22153 0.97027 1.01139 1.01463 1.21806 0.91665 0.98402 0.87150 0.90592 1.21181 0.85981 0.97839 0.93640 1.43892 0.98887 1.22630 1.66670 1.20796 0.92993 0.90450 0.93800 1.19076 0.97019 0.89490 1.33114 0.91617 1.24981 0.98576 0.96136 0.99438 1.70068 1.13191 1.21574 1.49478 0.86397 0.80014 0.82903 0.78038 1.21549 1.21653 1.20530 1.45716 1.64889 1.14364 1.08576 1.20264 0.77330 0.87088 0.84842 1.90623 1.52109 1.16125 1.85716 1.21559 1.04280 0.98776 0.92771 1.19973 1.02767 0.97127 0.87952 1.21184 0.91689 0.97975 0.92586 1.21341 0.96320 1.11604 1.00746 1.23805 0.95418 0.98498 0.96174 1.77305 1.00863 1.21373 1.13298 1.48470 1.06386 1.43939 1.16958 1.21835 0.74706 1.03429 1.04280 0.93105 0.93042 0.92336 0.93422 0.93060 0.95431 0.93640 0.98637 0.93702 0.76051 0.87885 0.89868 0.90315 0.88283 0.83343 0.80164 0.90794 0.89498 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.13 2.88 -67.93 -0.20 1.93 16 3 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 4 C 0.14 2.66 5.36 -4.04 -0.02 2.64 16 5 N -0.60 -13.91 2.82 -181.11 -0.51 -14.42 16 6 C 0.16 3.94 9.01 59.85 0.54 4.48 16 7 C -0.26 -6.37 8.02 -15.06 -0.12 -6.49 16 8 H 0.07 1.57 7.84 -52.49 -0.41 1.16 16 9 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 10 N -0.90 -24.86 10.57 55.49 0.59 -24.27 16 11 Si 0.90 20.62 29.57 -169.99 -5.03 15.59 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 15 N -0.69 -12.54 4.49 -53.80 -0.24 -12.78 16 16 C 0.52 9.52 7.79 -10.99 -0.09 9.43 16 17 O -0.57 -11.89 15.65 5.55 0.09 -11.80 16 18 C -0.13 -2.00 5.68 -27.88 -0.16 -2.16 16 19 C -0.04 -0.54 4.79 -27.88 -0.13 -0.67 16 20 C 0.09 1.30 6.18 -82.27 -0.51 0.80 16 21 C -0.27 -3.84 10.72 -40.01 -0.43 -4.27 16 22 C 0.05 0.62 12.03 -17.36 -0.21 0.41 16 23 N -0.31 -4.52 12.58 30.62 0.39 -4.14 16 24 N -0.37 -5.03 4.01 -63.89 -0.26 -5.29 16 25 C 0.10 0.92 11.27 59.85 0.67 1.60 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.84 8.03 -51.93 -0.42 0.43 16 30 H 0.05 0.88 7.86 -51.93 -0.41 0.48 16 31 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 32 H 0.04 1.17 7.16 -51.93 -0.37 0.80 16 33 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 34 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.40 7.30 7.40 -40.82 -0.30 7.00 16 36 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.02 6.90 -51.93 -0.36 0.66 16 39 H 0.10 1.50 8.10 -51.93 -0.42 1.08 16 40 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.69 6.97 -51.93 -0.36 0.33 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -31.54 363.90 -7.06 -38.59 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.18 Total: 7.18 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.39 Total: 5.85 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.04 Total: -60.90 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.54 -7.06 -38.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754311895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.910 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds