Wall clock time and date at job start Fri Apr 10 2020 20:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47395 * 2 1 4 4 C 1.53000 * 109.47297 * 119.99924 * 2 1 3 5 5 N 1.46500 * 109.47006 * 174.99813 * 4 2 1 6 6 C 1.46501 * 120.00123 * 270.00092 * 5 4 2 7 7 C 1.36935 * 119.99767 * 90.00617 * 5 4 2 8 8 H 1.08003 * 120.00394 * 20.37364 * 7 5 4 9 9 C 1.38818 * 119.99978 * 200.38247 * 7 5 4 10 10 N 1.31617 * 119.99995 * 14.99719 * 9 7 5 11 11 Si 1.86801 * 120.00030 * 195.00291 * 9 7 5 12 12 H 1.48501 * 109.47215 * 84.99877 * 11 9 7 13 13 H 1.48497 * 109.47283 * 204.99741 * 11 9 7 14 14 H 1.48501 * 109.47278 * 325.00032 * 11 9 7 15 15 N 1.46502 * 109.47268 * 240.00086 * 2 1 3 16 16 C 1.34784 * 119.99680 * 84.99718 * 15 2 1 17 17 O 1.21274 * 120.00043 * 0.02562 * 16 15 2 18 18 C 1.50706 * 119.99745 * 179.97438 * 16 15 2 19 19 C 1.52997 * 109.46800 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46925 * 180.02562 * 19 18 16 21 21 C 1.35318 * 126.13058 * 84.68603 * 20 19 18 22 22 C 1.39865 * 107.91974 * 179.90500 * 21 20 19 23 23 N 1.30835 * 108.20726 * 0.36822 * 22 21 20 24 24 N 1.34949 * 126.12444 * 264.99979 * 20 19 18 25 25 C 1.46500 * 126.03899 * 359.94452 * 24 20 19 26 26 H 1.08997 * 109.47198 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.47001 * 59.99925 * 1 2 3 28 28 H 1.09003 * 109.46871 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47444 * 295.00200 * 4 2 1 30 30 H 1.09000 * 109.46760 * 55.00288 * 4 2 1 31 31 H 1.09000 * 109.47036 * 95.13129 * 6 5 4 32 32 H 1.09004 * 109.47333 * 215.12659 * 6 5 4 33 33 H 1.08999 * 109.47273 * 335.12999 * 6 5 4 34 34 H 0.97004 * 119.99959 * 180.02562 * 10 9 7 35 35 H 0.96995 * 120.00265 * 264.99728 * 15 2 1 36 36 H 1.08994 * 109.46683 * 60.00017 * 18 16 15 37 37 H 1.08997 * 109.47036 * 300.00482 * 18 16 15 38 38 H 1.08996 * 109.47063 * 60.00297 * 19 18 16 39 39 H 1.08997 * 109.47655 * 300.00023 * 19 18 16 40 40 H 1.08001 * 126.03305 * 0.04054 * 21 20 19 41 41 H 1.08007 * 125.89718 * 180.14428 * 22 21 20 42 42 H 1.09000 * 109.46905 * 89.99967 * 25 24 20 43 43 H 1.09000 * 109.47001 * 209.99713 * 25 24 20 44 44 H 1.08998 * 109.46707 * 329.99708 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5611 7 6 4.2799 0.1648 1.7240 8 1 3.8671 0.8402 2.4588 9 6 5.6009 0.3017 1.3202 10 7 6.0234 -0.3083 0.2331 11 14 6.7791 1.3515 2.3198 12 1 7.3499 0.5397 3.4246 13 1 7.8760 1.8357 1.4437 14 1 6.0482 2.5136 2.8860 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1586 -2.4115 18 6 2.6499 -0.7284 -3.5876 19 6 2.7018 0.2549 -4.7586 20 6 3.2041 -0.4554 -5.9891 21 6 2.4562 -1.1799 -6.8533 22 6 3.3042 -1.6650 -7.8542 23 7 4.5189 -1.2535 -7.5959 24 7 4.4815 -0.4879 -6.4232 25 6 5.6266 0.1628 -5.7818 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -0.1584 2.1370 30 1 1.6054 -1.7198 1.2951 31 1 4.3628 -1.7606 -0.4774 32 1 5.0418 -2.2452 1.0950 33 1 3.4386 -2.8372 0.5973 34 1 6.9467 -0.2129 -0.0488 35 1 2.2491 -1.6317 -1.1527 36 1 1.9778 -1.5507 -3.8326 37 1 3.6492 -1.1202 -3.3979 38 1 3.3742 1.0769 -4.5132 39 1 1.7027 0.6471 -4.9483 40 1 1.3922 -1.3512 -6.7837 41 1 3.0080 -2.2770 -8.6934 42 1 6.0788 -0.5221 -5.0646 43 1 6.3621 0.4332 -6.5395 44 1 5.2909 1.0614 -5.2643 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754311896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:14 Heat of formation + Delta-G solvation = 54.736459 kcal Electronic energy + Delta-G solvation = -24205.768238 eV Core-core repulsion = 20774.541190 eV Total energy + Delta-G solvation = -3431.227048 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21644 -39.27967 -36.46661 -34.19320 -33.83520 -32.90135 -31.34045 -30.35523 -28.95079 -26.68630 -26.22021 -25.65995 -24.59509 -21.80703 -21.11945 -20.33584 -19.79900 -19.50665 -17.08315 -16.83484 -16.14769 -15.63171 -15.37683 -15.15024 -14.80951 -14.38472 -13.93648 -13.69666 -13.55275 -13.25142 -13.13322 -12.88204 -12.72514 -12.39461 -12.20390 -12.15987 -11.93941 -11.84386 -11.47067 -11.12850 -11.03704 -10.86959 -10.81190 -10.58435 -10.56875 -10.24287 -10.00664 -9.87396 -9.40951 -9.16870 -8.63121 -8.48456 -8.36439 -6.82575 -5.77711 -3.20150 1.87986 2.55148 2.83902 3.20060 3.36285 3.42954 3.43418 3.77829 4.47498 4.59466 4.65236 5.01552 5.07262 5.19753 5.21671 5.29502 5.40491 5.43588 5.50597 5.59383 5.65321 5.70940 5.77402 5.84300 5.86206 5.98204 6.07993 6.10568 6.22993 6.26417 6.45191 6.51445 6.59991 6.66803 6.86353 7.02349 7.17771 7.27835 7.59462 7.73416 7.76651 8.12245 8.33138 8.81778 9.18401 9.81700 10.28634 11.27827 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.004413 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.962188 B = 6343.026785 C = 7637.660231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.085 0.915 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.254 4.254 8 H 0.069 0.931 9 C 0.004 3.996 10 N -0.906 5.906 11 Si 0.903 3.097 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.698 5.698 16 C 0.519 3.481 17 O -0.555 6.555 18 C -0.133 4.133 19 C -0.041 4.041 20 C 0.094 3.906 21 C -0.278 4.278 22 C 0.043 3.957 23 N -0.304 5.304 24 N -0.368 5.368 25 C 0.095 3.905 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.043 0.957 33 H -0.005 1.005 34 H 0.251 0.749 35 H 0.395 0.605 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.145 0.855 41 H 0.180 0.820 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 -3.755 -9.978 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.384 4.384 8 H 0.087 0.913 9 C -0.194 4.194 10 N -0.551 5.551 11 Si 0.733 3.267 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.347 5.347 16 C 0.305 3.695 17 O -0.434 6.434 18 C -0.174 4.174 19 C -0.080 4.080 20 C -0.034 4.034 21 C -0.307 4.307 22 C -0.143 4.143 23 N -0.126 5.126 24 N -0.150 5.150 25 C -0.046 4.046 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.014 0.986 34 H 0.061 0.939 35 H 0.229 0.771 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.163 0.837 41 H 0.197 0.803 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.456 -2.865 -10.371 12.548 hybrid contribution 0.147 0.099 0.695 0.717 sum -6.308 -2.766 -9.676 11.878 Atomic orbital electron populations 1.22147 0.96918 1.01044 1.01655 1.21851 0.91641 0.99125 0.86491 0.89727 1.21190 0.85686 0.97267 0.94433 1.43917 0.99107 1.20857 1.68078 1.20837 0.94558 0.85097 0.97785 1.19204 0.92957 1.09612 1.16616 0.91317 1.24909 0.98543 0.99430 0.96509 1.70061 1.15841 1.46970 1.22256 0.86300 0.80912 0.80044 0.79448 1.21533 1.21843 1.20584 1.45791 1.65933 1.13686 1.09297 1.20292 0.77393 0.87177 0.84657 1.90646 1.51339 1.15991 1.85439 1.21567 1.03793 0.99202 0.92799 1.19973 1.03168 0.96734 0.88137 1.21185 0.85039 0.99540 0.97616 1.21218 1.01065 1.09422 0.99046 1.23778 0.90477 1.00216 0.99798 1.77337 1.22018 1.12710 1.00505 1.48549 1.06633 1.40040 1.19779 1.21936 0.86735 0.97933 0.97980 0.92170 0.92973 0.93230 0.92332 0.94011 0.95147 0.93857 0.98611 0.93936 0.77108 0.88956 0.88757 0.89827 0.88590 0.83672 0.80263 0.90136 0.89421 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.48 37.16 0.35 -1.95 16 2 C 0.12 2.10 2.88 -67.93 -0.20 1.91 16 3 H 0.08 1.87 7.58 -51.93 -0.39 1.47 16 4 C 0.14 2.67 5.33 -4.04 -0.02 2.65 16 5 N -0.60 -13.93 2.78 -181.12 -0.50 -14.44 16 6 C 0.16 3.64 7.60 59.85 0.45 4.09 16 7 C -0.25 -6.75 9.68 -15.06 -0.15 -6.89 16 8 H 0.07 1.81 7.86 -52.48 -0.41 1.39 16 9 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 10 N -0.91 -25.22 10.67 55.49 0.59 -24.63 16 11 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 N -0.70 -11.98 4.42 -53.80 -0.24 -12.22 16 16 C 0.52 9.09 7.79 -10.98 -0.09 9.00 16 17 O -0.56 -11.55 15.64 5.56 0.09 -11.47 16 18 C -0.13 -1.82 5.68 -27.88 -0.16 -1.98 16 19 C -0.04 -0.54 4.79 -27.88 -0.13 -0.67 16 20 C 0.09 1.24 6.19 -82.26 -0.51 0.73 16 21 C -0.28 -3.36 10.72 -40.01 -0.43 -3.79 16 22 C 0.04 0.52 12.02 -17.37 -0.21 0.31 16 23 N -0.30 -4.40 12.58 30.62 0.39 -4.02 16 24 N -0.37 -5.08 4.01 -63.88 -0.26 -5.33 16 25 C 0.10 1.09 11.27 59.85 0.67 1.77 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 30 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 31 H 0.03 0.72 6.97 -51.93 -0.36 0.36 16 32 H 0.04 1.08 7.22 -51.93 -0.37 0.71 16 33 H 0.00 -0.09 7.83 -51.93 -0.41 -0.49 16 34 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.39 6.24 7.18 -40.82 -0.29 5.95 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.19 6.91 -51.93 -0.36 0.83 16 39 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.18 1.53 8.06 -52.48 -0.42 1.10 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.97 6.98 -51.93 -0.36 0.60 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -32.44 363.43 -7.13 -39.57 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.15 Total: 5.27 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.49 Total: 5.21 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.02 Total: -60.64 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.44 -7.13 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754311896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.307 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds