Wall clock time and date at job start Fri Apr 10 2020 20:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47122 * 2 1 4 4 N 1.46502 * 109.47417 * 119.99877 * 2 1 3 5 5 C 1.35854 * 126.18442 * 299.95917 * 4 2 1 6 6 N 1.30145 * 109.03750 * 180.02562 * 5 4 2 7 7 C 1.35740 * 108.98531 * 0.02562 * 6 5 4 8 8 C 1.47325 * 126.22226 * 180.26047 * 7 6 5 9 9 O 1.21616 * 120.00395 * 179.69023 * 8 7 6 10 10 N 1.34776 * 119.99739 * 359.69339 * 8 7 6 11 11 C 1.46506 * 120.00010 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46802 * 34.99507 * 11 10 8 13 13 C 1.52997 * 109.46686 * 274.99866 * 11 10 8 14 14 C 1.52996 * 109.47077 * 154.99983 * 11 10 8 15 15 N 1.46503 * 109.47224 * 304.99755 * 14 11 10 16 16 C 1.46504 * 119.99906 * 270.00604 * 15 14 11 17 17 C 1.36931 * 120.00378 * 90.00096 * 15 14 11 18 18 H 1.08003 * 119.99690 * 22.33848 * 17 15 14 19 19 C 1.38805 * 120.00574 * 202.34176 * 17 15 14 20 20 N 1.31623 * 119.99683 * 11.36499 * 19 17 15 21 21 Si 1.86805 * 120.00304 * 191.36473 * 19 17 15 22 22 H 1.48501 * 109.46830 * 60.00111 * 21 19 17 23 23 H 1.48499 * 109.47026 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47227 * 299.99732 * 21 19 17 25 25 C 1.35921 * 126.18189 * 120.00008 * 4 2 1 26 26 H 1.09000 * 109.47329 * 299.99817 * 1 2 3 27 27 H 1.08999 * 109.47376 * 60.00065 * 1 2 3 28 28 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47329 * 240.00183 * 2 1 3 30 30 H 1.09000 * 109.47237 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46859 * 300.00078 * 3 2 1 32 32 H 1.09000 * 109.46869 * 59.99902 * 3 2 1 33 33 H 1.08001 * 125.47689 * 0.03460 * 5 4 2 34 34 H 0.96996 * 120.00087 * 359.97438 * 10 8 7 35 35 H 1.09010 * 109.47358 * 299.99675 * 13 11 10 36 36 H 1.08998 * 109.47272 * 59.99755 * 13 11 10 37 37 H 1.08997 * 109.47232 * 180.02562 * 13 11 10 38 38 H 1.08996 * 109.47543 * 64.99725 * 14 11 10 39 39 H 1.09001 * 109.47214 * 185.00001 * 14 11 10 40 40 H 1.08993 * 109.47360 * 94.22030 * 16 15 14 41 41 H 1.09004 * 109.46740 * 214.22655 * 16 15 14 42 42 H 1.08998 * 109.47023 * 334.21920 * 16 15 14 43 43 H 0.97006 * 119.99591 * 180.02562 * 20 19 17 44 44 H 1.07999 * 126.60313 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7695 -0.3372 2.4841 6 7 2.3652 -1.1790 3.2780 7 6 3.0193 -2.1041 2.5302 8 6 3.8126 -3.2348 3.0426 9 8 4.3490 -4.0024 2.2667 10 7 3.9438 -3.4186 4.3713 11 6 4.7332 -4.5427 4.8809 12 1 5.5787 -4.7234 4.2171 13 6 3.8564 -5.7951 4.9424 14 6 5.2473 -4.2107 6.2831 15 7 5.9874 -2.9469 6.2454 16 6 7.4288 -2.9497 5.9838 17 6 5.3318 -1.7631 6.4545 18 1 4.3927 -1.7528 6.9878 19 6 5.8740 -0.5763 5.9811 20 7 6.8907 -0.6044 5.1456 21 14 5.1610 1.0609 6.5296 22 1 5.2720 1.1794 8.0057 23 1 5.9126 2.1685 5.8866 24 1 3.7320 1.1362 6.1330 25 6 2.8031 -1.8002 1.2179 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.1732 0.5065 2.7986 34 1 3.5163 -2.8063 4.9902 35 1 3.0108 -5.6144 5.6062 36 1 3.4901 -6.0315 3.9434 37 1 4.4435 -6.6313 5.3219 38 1 4.4037 -4.1174 6.9668 39 1 5.9068 -5.0078 6.6264 40 1 7.6052 -2.7982 4.9189 41 1 7.9021 -2.1463 6.5484 42 1 7.8518 -3.9066 6.2895 43 1 7.2699 0.2250 4.8150 44 1 3.1825 -2.3375 0.3614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:17 Heat of formation + Delta-G solvation = 42.541937 kcal Electronic energy + Delta-G solvation = -24696.926702 eV Core-core repulsion = 21265.170860 eV Total energy + Delta-G solvation = -3431.755842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87996 -38.63830 -36.22221 -35.87636 -33.76494 -31.38719 -30.80175 -29.97086 -28.88399 -27.65988 -26.03658 -25.44767 -23.41741 -22.96087 -21.41994 -20.28976 -19.82781 -19.13623 -17.37947 -16.61245 -15.91963 -15.43268 -15.32511 -14.77521 -14.59726 -14.13713 -13.88545 -13.67688 -13.58480 -13.20992 -13.08680 -12.83316 -12.66017 -12.60647 -12.44897 -12.03307 -11.76328 -11.64363 -11.52382 -11.25177 -11.12317 -10.70728 -10.57512 -10.26936 -10.11545 -9.93042 -9.81968 -9.67006 -9.48902 -9.19372 -8.40553 -8.32764 -7.94445 -6.62409 -5.58595 -3.03497 2.01521 2.72491 2.90192 3.49116 3.51600 3.54273 4.11316 4.26413 4.38121 4.57056 4.62710 4.66985 4.81878 4.88743 5.14304 5.28622 5.35146 5.44047 5.50794 5.58040 5.65933 5.67489 5.80028 5.80772 5.87281 6.08041 6.14408 6.30975 6.32239 6.40835 6.58868 6.66091 6.81529 6.87170 7.04276 7.28870 7.49891 7.53182 7.85898 7.93026 8.15197 8.51781 8.65643 9.20816 9.36420 10.00147 10.49279 11.46260 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.005897 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.601341 B = 4746.809994 C = 6181.999338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 C -0.165 4.165 4 N -0.458 5.458 5 C 0.180 3.820 6 N -0.449 5.449 7 C -0.039 4.039 8 C 0.602 3.398 9 O -0.572 6.572 10 N -0.670 5.670 11 C 0.117 3.883 12 H 0.076 0.924 13 C -0.159 4.159 14 C 0.142 3.858 15 N -0.598 5.598 16 C 0.165 3.835 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.011 3.989 20 N -0.903 5.903 21 Si 0.897 3.103 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.277 1.277 25 C 0.018 3.982 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.202 0.798 34 H 0.412 0.588 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.027 0.973 41 H 0.044 0.956 42 H -0.005 1.005 43 H 0.249 0.751 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 0.344 -9.518 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.223 4.223 4 N -0.143 5.143 5 C -0.103 4.103 6 N -0.167 5.167 7 C -0.169 4.169 8 C 0.388 3.612 9 O -0.452 6.452 10 N -0.318 5.318 11 C 0.009 3.991 12 H 0.094 0.906 13 C -0.218 4.218 14 C 0.014 3.986 15 N -0.320 5.320 16 C 0.021 3.979 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.188 4.188 20 N -0.547 5.547 21 Si 0.727 3.273 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.203 1.203 25 C -0.119 4.119 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.218 0.782 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.013 0.987 43 H 0.059 0.941 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.992 0.031 -9.309 15.181 hybrid contribution -0.464 1.510 -0.522 1.664 sum -12.456 1.541 -9.831 15.943 Atomic orbital electron populations 1.22174 0.93194 1.03276 1.03345 1.21465 0.95420 0.94128 0.86517 1.22194 1.02617 0.94139 1.03306 1.45716 1.38492 1.22195 1.07873 1.24943 1.04376 1.02316 0.78701 1.70667 1.09966 1.03661 1.32382 1.20717 1.06097 0.99859 0.90189 1.16819 0.79206 0.82263 0.82917 1.90692 1.50179 1.47064 1.57306 1.45518 1.50670 1.29629 1.06022 1.21835 0.93328 0.84699 0.99246 0.90628 1.22157 1.00130 0.98068 1.01423 1.21186 0.95452 0.89392 0.92597 1.43900 1.03847 1.01131 1.83156 1.20779 0.82798 0.94897 0.99452 1.19001 1.05680 0.84086 1.29250 0.91636 1.24927 0.98551 0.97931 0.97348 1.70079 1.26323 1.25541 1.32795 0.86435 0.78958 0.84028 0.77858 1.21414 1.22124 1.20344 1.22600 0.98551 0.91089 0.99672 0.91488 0.90533 0.91650 0.88172 0.91423 0.90528 0.91453 0.78153 0.75096 0.93053 0.92996 0.92365 0.93382 0.93057 0.95502 0.93762 0.98690 0.94065 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.24 37.16 0.34 -0.72 16 2 C 0.13 1.09 3.57 -67.93 -0.24 0.84 16 3 C -0.16 -1.29 9.24 37.16 0.34 -0.94 16 4 N -0.46 -6.02 2.60 -111.10 -0.29 -6.31 16 5 C 0.18 2.71 11.53 -89.92 -1.04 1.67 16 6 N -0.45 -8.83 11.00 -11.04 -0.12 -8.95 16 7 C -0.04 -0.79 6.98 -83.10 -0.58 -1.37 16 8 C 0.60 13.72 7.78 -12.56 -0.10 13.63 16 9 O -0.57 -13.95 16.54 5.26 0.09 -13.86 16 10 N -0.67 -14.87 4.49 -54.91 -0.25 -15.12 16 11 C 0.12 2.41 2.88 -67.93 -0.20 2.21 16 12 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 13 C -0.16 -2.65 9.48 37.16 0.35 -2.29 16 14 C 0.14 2.96 5.36 -4.04 -0.02 2.93 16 15 N -0.60 -15.18 2.82 -181.12 -0.51 -15.69 16 16 C 0.17 4.25 9.01 59.85 0.54 4.79 16 17 C -0.25 -6.83 8.02 -15.06 -0.12 -6.95 16 18 H 0.07 1.75 7.84 -52.48 -0.41 1.34 16 19 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 20 N -0.90 -27.05 10.59 55.49 0.59 -26.46 16 21 Si 0.90 22.48 29.57 -169.99 -5.03 17.45 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.02 0.29 11.25 -16.39 -0.18 0.11 16 26 H 0.07 0.44 7.94 -51.93 -0.41 0.03 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 33 H 0.20 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.41 9.47 7.11 -40.82 -0.29 9.18 16 35 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.95 8.03 -51.93 -0.42 0.54 16 39 H 0.05 0.96 7.86 -51.93 -0.41 0.56 16 40 H 0.03 0.76 7.42 -51.93 -0.39 0.38 16 41 H 0.04 1.21 7.19 -51.93 -0.37 0.83 16 42 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.18 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -34.68 364.64 -8.29 -42.97 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.27 Total: 6.36 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -0.99 Total: 14.12 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -0.58 Total: -72.53 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.68 -8.29 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.511 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds