Wall clock time and date at job start Fri Apr 10 2020 20:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46934 * 2 1 4 4 N 1.46500 * 109.46829 * 120.00136 * 2 1 3 5 5 C 1.35846 * 126.13187 * 299.99677 * 4 2 1 6 6 N 1.30171 * 109.00203 * 179.76638 * 5 4 2 7 7 C 1.35757 * 108.86572 * 0.38296 * 6 5 4 8 8 C 1.47326 * 126.24011 * 179.88515 * 7 6 5 9 9 O 1.21625 * 120.00705 * 179.68862 * 8 7 6 10 10 N 1.34783 * 119.99587 * 359.68895 * 8 7 6 11 11 C 1.46499 * 119.99793 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47261 * 324.99721 * 11 10 8 13 13 C 1.53004 * 109.47358 * 84.99936 * 11 10 8 14 14 C 1.52998 * 109.46916 * 204.99964 * 11 10 8 15 15 N 1.46493 * 109.47341 * 54.99921 * 14 11 10 16 16 C 1.46503 * 120.00210 * 269.99787 * 15 14 11 17 17 C 1.36939 * 119.99869 * 89.99920 * 15 14 11 18 18 H 1.07994 * 119.99942 * 339.79604 * 17 15 14 19 19 C 1.38819 * 119.99752 * 160.07119 * 17 15 14 20 20 N 1.31619 * 119.99750 * 344.54386 * 19 17 15 21 21 Si 1.86792 * 119.99689 * 164.54697 * 19 17 15 22 22 H 1.48503 * 109.47316 * 60.00053 * 21 19 17 23 23 H 1.48508 * 109.47034 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47250 * 299.99775 * 21 19 17 25 25 C 1.35370 * 126.13592 * 120.00369 * 4 2 1 26 26 H 1.09003 * 109.46787 * 300.00524 * 1 2 3 27 27 H 1.08999 * 109.47017 * 59.99902 * 1 2 3 28 28 H 1.08994 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46928 * 240.00170 * 2 1 3 30 30 H 1.08999 * 109.47349 * 299.99895 * 3 2 1 31 31 H 1.08995 * 109.47557 * 59.99960 * 3 2 1 32 32 H 1.09007 * 109.47029 * 179.97438 * 3 2 1 33 33 H 1.08000 * 125.50408 * 0.02562 * 5 4 2 34 34 H 0.96994 * 120.00156 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47110 * 59.99693 * 13 11 10 36 36 H 1.08996 * 109.47243 * 179.97438 * 13 11 10 37 37 H 1.09009 * 109.46724 * 300.00080 * 13 11 10 38 38 H 1.09003 * 109.46901 * 294.99749 * 14 11 10 39 39 H 1.09003 * 109.47480 * 175.00391 * 14 11 10 40 40 H 1.08994 * 109.47534 * 264.78742 * 16 15 14 41 41 H 1.09003 * 109.46817 * 24.78464 * 16 15 14 42 42 H 1.08996 * 109.47042 * 144.77898 * 16 15 14 43 43 H 0.97002 * 119.99544 * 179.97438 * 20 19 17 44 44 H 1.08000 * 126.56377 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7681 -0.3368 2.4837 6 7 2.3593 -1.1817 3.2780 7 6 3.0169 -2.1028 2.5282 8 6 3.8144 -3.2320 3.0377 9 8 4.3536 -3.9958 2.2598 10 7 3.9464 -3.4185 4.3660 11 6 4.7398 -4.5410 4.8727 12 1 4.6232 -5.3974 4.2086 13 6 6.2146 -4.1379 4.9310 14 6 4.2573 -4.9143 6.2758 15 7 2.8179 -5.1849 6.2413 16 6 1.8625 -4.0977 6.4683 17 6 2.3655 -6.4541 5.9969 18 1 3.0113 -7.1745 5.5171 19 6 1.0748 -6.8129 6.3608 20 7 0.3938 -6.0597 7.1983 21 14 0.3048 -8.3646 5.6620 22 1 1.1259 -9.5409 6.0458 23 1 -1.0690 -8.5226 6.2034 24 1 0.2453 -8.2643 4.1816 25 6 2.7998 -1.7958 1.2168 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.1712 0.5068 2.7976 34 1 3.5167 -2.8092 4.9864 35 1 6.3312 -3.2815 5.5951 36 1 6.8049 -4.9729 5.3084 37 1 6.5584 -3.8719 3.9313 38 1 4.4556 -4.0890 6.9597 39 1 4.7862 -5.8041 6.6172 40 1 1.5680 -4.0860 7.5176 41 1 2.3273 -3.1459 6.2108 42 1 0.9816 -4.2522 5.8453 43 1 -0.5082 -6.3103 7.4522 44 1 3.1786 -2.3320 0.3592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:19 Heat of formation + Delta-G solvation = 44.376254 kcal Electronic energy + Delta-G solvation = -24202.498137 eV Core-core repulsion = 20770.821837 eV Total energy + Delta-G solvation = -3431.676300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.18433 -38.91221 -36.37849 -36.05411 -33.90464 -31.54664 -30.91404 -30.21367 -29.13830 -27.80574 -26.03601 -25.50910 -23.64352 -23.18855 -21.43389 -20.52340 -20.06216 -19.39067 -17.56786 -16.67272 -16.20866 -15.61832 -15.45211 -14.88097 -14.81395 -14.31293 -14.06108 -13.89553 -13.59661 -13.43002 -13.22719 -13.12737 -12.76896 -12.65737 -12.61016 -11.99359 -11.88892 -11.81552 -11.68635 -11.32149 -11.17686 -10.71663 -10.56396 -10.47684 -10.13376 -10.01536 -9.91472 -9.76364 -9.73883 -9.44083 -8.60001 -8.44897 -8.21195 -6.64571 -5.61385 -3.04244 1.77950 2.51250 2.61789 3.47138 3.51617 3.55086 3.86651 4.04472 4.11379 4.41078 4.50631 4.57446 4.61052 4.67591 5.00812 5.13369 5.20513 5.28443 5.33006 5.44256 5.51508 5.59461 5.62111 5.65287 5.78094 5.95240 6.08892 6.09492 6.22185 6.33448 6.53336 6.58509 6.67068 6.85094 6.93540 7.04562 7.27958 7.52063 7.82122 7.86366 7.92445 8.31821 8.49223 8.90509 9.34500 9.98540 10.45940 11.43406 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.004281 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.961138 B = 6539.715528 C = 7485.772858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 C -0.163 4.163 4 N -0.455 5.455 5 C 0.182 3.818 6 N -0.457 5.457 7 C -0.051 4.051 8 C 0.600 3.400 9 O -0.560 6.560 10 N -0.687 5.687 11 C 0.115 3.885 12 H 0.084 0.916 13 C -0.157 4.157 14 C 0.144 3.856 15 N -0.598 5.598 16 C 0.170 3.830 17 C -0.250 4.250 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.908 5.908 21 Si 0.901 3.099 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.025 3.975 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.205 0.795 34 H 0.405 0.595 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.027 0.973 41 H -0.002 1.002 42 H 0.040 0.960 43 H 0.251 0.749 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 16.916 -13.576 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.221 4.221 4 N -0.138 5.138 5 C -0.101 4.101 6 N -0.175 5.175 7 C -0.180 4.180 8 C 0.385 3.615 9 O -0.439 6.439 10 N -0.337 5.337 11 C 0.008 3.992 12 H 0.102 0.898 13 C -0.217 4.217 14 C 0.015 3.985 15 N -0.320 5.320 16 C 0.025 3.975 17 C -0.380 4.380 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.554 5.554 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.212 1.212 25 C -0.113 4.113 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.222 0.778 34 H 0.242 0.758 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.252 16.406 -13.229 21.325 hybrid contribution -0.895 -0.513 -1.012 1.445 sum 2.357 15.893 -14.242 21.470 Atomic orbital electron populations 1.22195 0.92912 1.03654 1.03490 1.21525 0.95739 0.94068 0.86356 1.22182 1.02288 0.94100 1.03508 1.45602 1.38043 1.22088 1.08095 1.24978 1.04331 1.02110 0.78695 1.70660 1.10511 1.03830 1.32545 1.20753 1.06751 1.00155 0.90381 1.16883 0.79250 0.82464 0.82900 1.90733 1.49887 1.46365 1.56946 1.45827 1.51462 1.30289 1.06105 1.21938 0.88764 0.88961 0.99570 0.89830 1.22125 0.96884 1.01225 1.01422 1.21042 0.86730 0.98951 0.91763 1.43835 0.98945 1.06082 1.83179 1.20782 0.91685 0.85476 0.99537 1.19149 0.97799 0.88918 1.32122 0.91487 1.24897 0.98525 0.98110 0.98142 1.70088 1.11701 1.39436 1.34136 0.86381 0.78375 0.83190 0.78921 1.20973 1.21751 1.21241 1.22540 0.98172 0.90839 0.99760 0.91377 0.90365 0.91417 0.88019 0.90367 0.91416 0.91601 0.77833 0.75784 0.93059 0.91999 0.92939 0.94107 0.91959 0.95429 0.98412 0.94083 0.93900 0.79899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.24 37.16 0.34 -0.58 16 2 C 0.13 0.81 3.57 -67.93 -0.24 0.57 16 3 C -0.16 -0.78 9.24 37.16 0.34 -0.44 16 4 N -0.45 -4.82 2.59 -111.25 -0.29 -5.11 16 5 C 0.18 2.18 11.52 -89.91 -1.04 1.14 16 6 N -0.46 -7.43 11.01 -11.03 -0.12 -7.55 16 7 C -0.05 -0.89 6.98 -83.09 -0.58 -1.47 16 8 C 0.60 12.14 7.78 -12.56 -0.10 12.04 16 9 O -0.56 -12.53 16.54 5.26 0.09 -12.44 16 10 N -0.69 -13.60 4.52 -54.91 -0.25 -13.85 16 11 C 0.12 2.26 2.88 -67.93 -0.20 2.06 16 12 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 13 C -0.16 -2.52 9.48 37.16 0.35 -2.16 16 14 C 0.14 3.02 5.29 -4.05 -0.02 3.00 16 15 N -0.60 -15.48 2.78 -181.12 -0.50 -15.98 16 16 C 0.17 4.34 8.52 59.85 0.51 4.85 16 17 C -0.25 -7.17 9.67 -15.06 -0.15 -7.32 16 18 H 0.07 1.89 7.87 -52.49 -0.41 1.48 16 19 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 20 N -0.91 -27.34 10.67 55.49 0.59 -26.75 16 21 Si 0.90 22.94 29.58 -169.99 -5.03 17.91 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 C 0.02 0.34 11.22 -16.64 -0.19 0.16 16 26 H 0.07 0.38 7.94 -51.93 -0.41 -0.04 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.32 7.94 -51.93 -0.41 -0.10 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.21 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.40 7.94 5.92 -40.82 -0.24 7.69 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 38 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 39 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 40 H 0.03 0.76 7.40 -51.93 -0.38 0.37 16 41 H 0.00 -0.06 5.76 -51.93 -0.30 -0.35 16 42 H 0.04 1.15 7.20 -51.93 -0.37 0.78 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -35.26 362.67 -8.22 -43.47 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.13 Total: 3.05 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -1.04 Total: 11.78 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -0.57 Total: -69.24 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.26 -8.22 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.850 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds