Wall clock time and date at job start Fri Apr 10 2020 20:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.52998 * 109.47417 * 239.99581 * 2 1 3 5 5 N 1.46500 * 109.47028 * 185.00544 * 4 2 1 6 6 C 1.46506 * 119.99699 * 269.99550 * 5 4 2 7 7 C 1.36935 * 120.00432 * 90.00224 * 5 4 2 8 8 H 1.08004 * 119.99548 * 20.30027 * 7 5 4 9 9 C 1.38812 * 119.99870 * 200.30269 * 7 5 4 10 10 N 1.31609 * 119.99999 * 15.01362 * 9 7 5 11 11 Si 1.86801 * 119.99793 * 195.01106 * 9 7 5 12 12 H 1.48498 * 109.47053 * 85.00162 * 11 9 7 13 13 H 1.48497 * 109.47306 * 205.00510 * 11 9 7 14 14 H 1.48505 * 109.47133 * 325.00333 * 11 9 7 15 15 N 1.46509 * 109.46813 * 119.99488 * 2 1 3 16 16 C 1.34773 * 119.99883 * 275.00307 * 15 2 1 17 17 O 1.21280 * 120.00092 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99860 * 180.02562 * 16 15 2 19 19 C 1.52997 * 109.47298 * 179.97438 * 18 16 15 20 20 H 1.09009 * 109.46865 * 54.99815 * 19 18 16 21 21 C 1.53002 * 109.47232 * 295.00495 * 19 18 16 22 22 N 1.46492 * 109.47402 * 174.99913 * 19 18 16 23 23 C 1.36881 * 126.39900 * 240.00355 * 22 19 18 24 24 C 1.34679 * 106.81967 * 179.97438 * 23 22 19 25 25 N 1.34125 * 108.01713 * 0.02562 * 24 23 22 26 26 C 1.30505 * 109.25818 * 359.72639 * 25 24 23 27 27 H 1.08996 * 109.47384 * 300.00926 * 1 2 3 28 28 H 1.09002 * 109.46822 * 60.00134 * 1 2 3 29 29 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46976 * 305.00481 * 4 2 1 31 31 H 1.08995 * 109.47166 * 65.00069 * 4 2 1 32 32 H 1.08996 * 109.46563 * 95.10594 * 6 5 4 33 33 H 1.08998 * 109.47155 * 215.10970 * 6 5 4 34 34 H 1.09002 * 109.47128 * 335.10753 * 6 5 4 35 35 H 0.97002 * 119.99769 * 179.97438 * 10 9 7 36 36 H 0.97002 * 119.99644 * 95.00310 * 15 2 1 37 37 H 1.09000 * 109.46959 * 299.99964 * 18 16 15 38 38 H 1.09001 * 109.47140 * 59.99790 * 18 16 15 39 39 H 1.09004 * 109.46536 * 299.98992 * 21 19 18 40 40 H 1.08992 * 109.47255 * 59.99852 * 21 19 18 41 41 H 1.09000 * 109.46860 * 180.02562 * 21 19 18 42 42 H 1.08000 * 126.59177 * 0.03780 * 23 22 19 43 43 H 1.07993 * 125.98967 * 179.97438 * 24 23 22 44 44 H 1.07998 * 125.64824 * 180.29802 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1903 6 6 4.3345 0.2339 -1.7611 7 6 4.0850 -1.9160 -0.6020 8 1 3.5228 -2.8299 -0.4787 9 6 5.4004 -1.8456 -0.1641 10 7 5.9902 -0.6759 -0.0378 11 14 6.3332 -3.4113 0.2459 12 1 6.9257 -3.9736 -0.9942 13 1 7.4146 -3.1036 1.2159 14 1 5.4006 -4.4014 0.8419 15 7 2.0183 -0.6906 1.1963 16 6 2.1469 -0.0181 2.3572 17 8 1.8589 1.1587 2.4114 18 6 2.6497 -0.7283 3.5876 19 6 2.7016 0.2550 4.7586 20 1 1.7217 0.7138 4.8915 21 6 3.7381 1.3418 4.4665 22 7 3.0755 -0.4606 5.9810 23 6 2.3318 -0.5558 7.1262 24 6 3.0450 -1.2997 7.9933 25 7 4.1931 -1.6486 7.3940 26 6 4.2159 -1.1541 6.1865 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6054 -1.7199 -1.2950 31 1 1.7518 -0.1585 -2.1369 32 1 4.6152 0.9369 -0.9769 33 1 5.2331 -0.2047 -2.1948 34 1 3.7757 0.7583 -2.5363 35 1 6.9093 -0.6268 0.2686 36 1 2.2490 -1.6317 1.1528 37 1 1.9775 -1.5506 3.8327 38 1 3.6491 -1.1201 3.3981 39 1 4.7180 0.8830 4.3338 40 1 3.4599 1.8742 3.5571 41 1 3.7754 2.0420 5.3010 42 1 1.3594 -0.1193 7.3005 43 1 2.7454 -1.5675 8.9957 44 1 5.0153 -1.2774 5.4709 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:21 Heat of formation + Delta-G solvation = 43.671418 kcal Electronic energy + Delta-G solvation = -24713.499241 eV Core-core repulsion = 21281.792377 eV Total energy + Delta-G solvation = -3431.706864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.00071 -39.45605 -36.68980 -35.35722 -34.03244 -31.62218 -30.86804 -30.12415 -29.11435 -27.59392 -26.25133 -25.69171 -23.43292 -21.96087 -21.26834 -20.74693 -19.92034 -19.61768 -17.45074 -16.84165 -16.14272 -15.64671 -15.35493 -15.02049 -14.93634 -14.30609 -13.87729 -13.82989 -13.58785 -13.44477 -13.19307 -13.08015 -12.89512 -12.65517 -12.26236 -12.01750 -11.72665 -11.47896 -11.43548 -11.30616 -11.13824 -10.91677 -10.77408 -10.49431 -10.33138 -10.12534 -9.90783 -9.87521 -9.58604 -9.31226 -8.65637 -8.43644 -8.38112 -6.90062 -5.83380 -3.28060 2.15278 2.77888 3.12890 3.27273 3.28437 3.35847 3.38646 3.83040 4.38463 4.56780 4.80576 4.83479 4.93937 5.08704 5.25093 5.32878 5.40857 5.47781 5.55908 5.58613 5.69511 5.72772 5.79220 5.88207 5.90489 5.95504 6.08262 6.16334 6.33343 6.37397 6.42052 6.47591 6.66216 6.79744 6.81712 7.16832 7.28370 7.29504 7.60939 7.70067 8.14846 8.17603 8.25909 8.78318 9.10549 9.75262 10.24545 11.20313 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.005467 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.320163 B = 5120.757268 C = 6521.231716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.683 5.683 16 C 0.525 3.475 17 O -0.561 6.561 18 C -0.153 4.153 19 C 0.152 3.848 20 H 0.105 0.895 21 C -0.164 4.164 22 N -0.450 5.450 23 C -0.059 4.059 24 C -0.037 4.037 25 N -0.501 5.501 26 C 0.187 3.813 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.043 0.957 34 H -0.003 1.003 35 H 0.253 0.747 36 H 0.405 0.595 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.170 0.830 43 H 0.165 0.835 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 1.125 6.544 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.018 3.982 7 C -0.388 4.388 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.725 3.275 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.205 1.205 15 N -0.331 5.331 16 C 0.310 3.690 17 O -0.442 6.442 18 C -0.194 4.194 19 C 0.049 3.951 20 H 0.123 0.877 21 C -0.222 4.222 22 N -0.132 5.132 23 C -0.193 4.193 24 C -0.185 4.185 25 N -0.219 5.219 26 C -0.096 4.096 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.241 0.759 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.188 0.812 43 H 0.183 0.817 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.685 1.596 6.805 11.148 hybrid contribution 0.170 -0.813 -0.094 0.836 sum -8.515 0.783 6.711 10.870 Atomic orbital electron populations 1.22154 0.96877 1.01250 1.01563 1.21845 0.91761 0.98401 0.86967 0.90469 1.21183 0.85936 0.97931 0.93632 1.43905 0.98890 1.22682 1.66547 1.20796 0.92910 0.90412 0.94034 1.19065 0.96005 0.89881 1.33831 0.91568 1.24924 0.98466 0.96161 0.99645 1.70087 1.12797 1.21739 1.49539 0.86440 0.80023 0.83118 0.77925 1.21452 1.21681 1.20545 1.45702 1.64532 1.14432 1.08482 1.19908 0.77503 0.86989 0.84566 1.90609 1.52159 1.15891 1.85556 1.21974 1.04966 0.99149 0.93292 1.21166 1.01206 0.91856 0.80857 0.87679 1.22273 0.98037 0.97816 1.04064 1.45862 1.16038 1.38806 1.12527 1.22730 1.00361 1.08233 0.87940 1.22253 0.92666 1.02957 1.00607 1.70306 1.21780 1.24132 1.05697 1.24962 0.91504 0.96929 0.96211 0.92990 0.92235 0.93037 0.93344 0.92943 0.95280 0.93875 0.98443 0.93694 0.75934 0.88877 0.87608 0.91937 0.88007 0.92464 0.81247 0.81721 0.78163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 2 C 0.12 2.02 2.88 -67.93 -0.20 1.83 16 3 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 4 C 0.14 2.55 5.36 -4.04 -0.02 2.53 16 5 N -0.60 -13.45 2.82 -181.12 -0.51 -13.96 16 6 C 0.16 3.80 9.02 59.85 0.54 4.34 16 7 C -0.26 -6.21 8.02 -15.06 -0.12 -6.34 16 8 H 0.07 1.54 7.86 -52.48 -0.41 1.13 16 9 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 10 N -0.90 -24.12 10.66 55.49 0.59 -23.53 16 11 Si 0.89 20.22 29.58 -169.99 -5.03 15.20 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 15 N -0.68 -11.78 4.49 -53.80 -0.24 -12.02 16 16 C 0.53 8.94 7.51 -10.99 -0.08 8.86 16 17 O -0.56 -10.77 13.63 5.56 0.08 -10.69 16 18 C -0.15 -2.15 5.17 -27.88 -0.14 -2.30 16 19 C 0.15 2.00 2.70 -67.94 -0.18 1.82 16 20 H 0.11 1.34 7.90 -51.92 -0.41 0.93 16 21 C -0.16 -2.33 8.99 37.16 0.33 -1.99 16 22 N -0.45 -5.91 2.62 -111.46 -0.29 -6.21 16 23 C -0.06 -0.71 11.54 -16.56 -0.19 -0.90 16 24 C -0.04 -0.48 11.87 -17.81 -0.21 -0.69 16 25 N -0.50 -7.86 11.25 -14.66 -0.16 -8.03 16 26 C 0.19 2.69 11.65 -90.37 -1.05 1.63 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 31 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 32 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 33 H 0.04 1.08 7.21 -51.93 -0.37 0.71 16 34 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 35 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.40 6.97 7.40 -40.82 -0.30 6.67 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 1.59 8.08 -51.93 -0.42 1.17 16 39 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 40 H 0.10 1.68 5.95 -51.93 -0.31 1.37 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.20 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -29.46 359.87 -8.38 -37.84 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.17 Total: 8.96 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.07 Total: 7.02 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.62 Total: -63.74 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.46 -8.38 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.507 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds