Wall clock time and date at job start Fri Apr 10 2020 20:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.52998 * 109.47417 * 239.99581 * 2 1 3 5 5 N 1.46500 * 109.47028 * 185.00544 * 4 2 1 6 6 C 1.46506 * 119.99699 * 269.99550 * 5 4 2 7 7 C 1.36935 * 120.00432 * 90.00224 * 5 4 2 8 8 H 1.08004 * 119.99548 * 20.30027 * 7 5 4 9 9 C 1.38812 * 119.99870 * 200.30269 * 7 5 4 10 10 N 1.31609 * 119.99999 * 15.01362 * 9 7 5 11 11 Si 1.86801 * 119.99793 * 195.01106 * 9 7 5 12 12 H 1.48498 * 109.47053 * 85.00162 * 11 9 7 13 13 H 1.48497 * 109.47306 * 205.00510 * 11 9 7 14 14 H 1.48505 * 109.47133 * 325.00333 * 11 9 7 15 15 N 1.46509 * 109.46813 * 119.99488 * 2 1 3 16 16 C 1.34773 * 119.99883 * 275.00307 * 15 2 1 17 17 O 1.21280 * 120.00092 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99860 * 180.02562 * 16 15 2 19 19 C 1.52997 * 109.47298 * 179.97438 * 18 16 15 20 20 H 1.09009 * 109.46865 * 54.99815 * 19 18 16 21 21 C 1.53002 * 109.47232 * 295.00495 * 19 18 16 22 22 N 1.46492 * 109.47402 * 174.99913 * 19 18 16 23 23 C 1.36881 * 126.39900 * 240.00355 * 22 19 18 24 24 C 1.34679 * 106.81967 * 179.97438 * 23 22 19 25 25 N 1.34125 * 108.01713 * 0.02562 * 24 23 22 26 26 C 1.30505 * 109.25818 * 359.72639 * 25 24 23 27 27 H 1.08996 * 109.47384 * 300.00926 * 1 2 3 28 28 H 1.09002 * 109.46822 * 60.00134 * 1 2 3 29 29 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46976 * 305.00481 * 4 2 1 31 31 H 1.08995 * 109.47166 * 65.00069 * 4 2 1 32 32 H 1.08996 * 109.46563 * 95.10594 * 6 5 4 33 33 H 1.08998 * 109.47155 * 215.10970 * 6 5 4 34 34 H 1.09002 * 109.47128 * 335.10753 * 6 5 4 35 35 H 0.97002 * 119.99769 * 179.97438 * 10 9 7 36 36 H 0.97002 * 119.99644 * 95.00310 * 15 2 1 37 37 H 1.09000 * 109.46959 * 299.99964 * 18 16 15 38 38 H 1.09001 * 109.47140 * 59.99790 * 18 16 15 39 39 H 1.09004 * 109.46536 * 299.98992 * 21 19 18 40 40 H 1.08992 * 109.47255 * 59.99852 * 21 19 18 41 41 H 1.09000 * 109.46860 * 180.02562 * 21 19 18 42 42 H 1.08000 * 126.59177 * 0.03780 * 23 22 19 43 43 H 1.07993 * 125.98967 * 179.97438 * 24 23 22 44 44 H 1.07998 * 125.64824 * 180.29802 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1903 6 6 4.3345 0.2339 -1.7611 7 6 4.0850 -1.9160 -0.6020 8 1 3.5228 -2.8299 -0.4787 9 6 5.4004 -1.8456 -0.1641 10 7 5.9902 -0.6759 -0.0378 11 14 6.3332 -3.4113 0.2459 12 1 6.9257 -3.9736 -0.9942 13 1 7.4146 -3.1036 1.2159 14 1 5.4006 -4.4014 0.8419 15 7 2.0183 -0.6906 1.1963 16 6 2.1469 -0.0181 2.3572 17 8 1.8589 1.1587 2.4114 18 6 2.6497 -0.7283 3.5876 19 6 2.7016 0.2550 4.7586 20 1 1.7217 0.7138 4.8915 21 6 3.7381 1.3418 4.4665 22 7 3.0755 -0.4606 5.9810 23 6 2.3318 -0.5558 7.1262 24 6 3.0450 -1.2997 7.9933 25 7 4.1931 -1.6486 7.3940 26 6 4.2159 -1.1541 6.1865 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6054 -1.7199 -1.2950 31 1 1.7518 -0.1585 -2.1369 32 1 4.6152 0.9369 -0.9769 33 1 5.2331 -0.2047 -2.1948 34 1 3.7757 0.7583 -2.5363 35 1 6.9093 -0.6268 0.2686 36 1 2.2490 -1.6317 1.1528 37 1 1.9775 -1.5506 3.8327 38 1 3.6491 -1.1201 3.3981 39 1 4.7180 0.8830 4.3338 40 1 3.4599 1.8742 3.5571 41 1 3.7754 2.0420 5.3010 42 1 1.3594 -0.1193 7.3005 43 1 2.7454 -1.5675 8.9957 44 1 5.0153 -1.2774 5.4709 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754326005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:20 Heat of formation + Delta-G solvation = 27.473122 kcal Electronic energy + Delta-G solvation = -24714.201652 eV Core-core repulsion = 21281.792377 eV Total energy + Delta-G solvation = -3432.409275 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.03702 -40.81102 -38.19941 -36.61784 -35.60374 -33.23491 -32.20494 -31.44268 -30.12479 -28.78829 -28.01808 -27.34654 -24.58985 -23.53843 -22.34722 -22.05083 -21.25152 -20.85354 -18.79633 -18.44795 -17.45777 -17.01313 -16.72835 -16.54195 -16.12183 -15.60308 -15.45413 -15.07973 -14.86952 -14.64005 -14.54888 -14.38908 -14.25396 -13.81919 -13.76581 -13.39557 -13.08738 -12.91424 -12.82502 -12.68293 -12.53266 -12.50048 -12.28232 -12.13635 -11.94057 -11.90823 -11.65076 -10.94720 -10.78087 -10.59948 -10.56340 -9.77385 -9.43058 -8.76794 -7.75892 -5.20776 1.14086 1.47934 1.52948 1.57575 1.67230 1.82069 2.22950 2.52491 2.58013 3.39116 3.45504 3.68766 3.71861 3.85835 3.88722 4.02734 4.12971 4.24257 4.43320 4.48376 4.52206 4.57978 4.59920 4.70043 4.75820 4.77916 4.85202 4.86595 4.93702 5.03492 5.16048 5.21681 5.34988 5.41051 5.44131 5.67994 5.75179 5.81351 5.86106 6.23403 6.35604 6.78063 7.14560 7.19000 7.43102 7.92068 8.37628 9.27095 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.005467 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.320163 B = 5120.757268 C = 6521.231716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.043 0.957 4 C 0.140 3.860 5 N -0.611 5.611 6 C 0.178 3.822 7 C -0.245 4.245 8 H 0.080 0.920 9 C -0.042 4.042 10 N -0.931 5.931 11 Si 0.947 3.053 12 H -0.296 1.296 13 H -0.305 1.305 14 H -0.263 1.263 15 N -0.687 5.687 16 C 0.520 3.480 17 O -0.585 6.585 18 C -0.143 4.143 19 C 0.163 3.837 20 H 0.117 0.883 21 C -0.158 4.158 22 N -0.448 5.448 23 C -0.050 4.050 24 C -0.054 4.054 25 N -0.532 5.532 26 C 0.170 3.830 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.071 0.929 32 H -0.004 1.004 33 H 0.016 0.984 34 H 0.027 0.973 35 H 0.242 0.758 36 H 0.406 0.594 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.204 0.796 43 H 0.188 0.812 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 0.099 6.902 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.062 0.938 4 C 0.014 3.986 5 N -0.333 5.333 6 C 0.032 3.968 7 C -0.375 4.375 8 H 0.097 0.903 9 C -0.238 4.238 10 N -0.578 5.578 11 Si 0.777 3.223 12 H -0.224 1.224 13 H -0.232 1.232 14 H -0.187 1.187 15 N -0.335 5.335 16 C 0.306 3.694 17 O -0.468 6.468 18 C -0.184 4.184 19 C 0.060 3.940 20 H 0.134 0.866 21 C -0.216 4.216 22 N -0.130 5.130 23 C -0.183 4.183 24 C -0.201 4.201 25 N -0.251 5.251 26 C -0.112 4.112 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.014 0.986 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.242 0.758 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.221 0.779 43 H 0.205 0.795 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.108 0.542 7.159 13.227 hybrid contribution 0.837 -0.463 -0.241 0.987 sum -10.271 0.079 6.918 12.384 Atomic orbital electron populations 1.22019 0.93818 1.02560 1.02096 1.21683 0.94004 0.96248 0.86566 0.93849 1.21380 0.83170 0.99376 0.94716 1.44121 1.00858 1.22049 1.66288 1.20496 0.92665 0.90021 0.93570 1.19392 0.95816 0.90653 1.31615 0.90264 1.25488 0.99573 0.97884 1.00825 1.70254 1.12373 1.23397 1.51751 0.85586 0.78822 0.80961 0.76882 1.22361 1.23186 1.18722 1.45775 1.64593 1.14436 1.08702 1.20354 0.76981 0.86777 0.85261 1.90600 1.53176 1.16963 1.86020 1.21893 1.04585 0.99601 0.92284 1.21015 1.01155 0.91174 0.80654 0.86554 1.22153 0.97915 0.98218 1.03271 1.45835 1.15923 1.38551 1.12740 1.23287 1.01106 1.07069 0.86825 1.22730 0.92167 1.03344 1.01842 1.70282 1.23292 1.25122 1.06434 1.25083 0.92241 0.97630 0.96293 0.93834 0.90362 0.91252 0.91538 0.91056 0.98616 0.96549 0.95463 0.94828 0.75848 0.86704 0.88684 0.92836 0.90487 0.91348 0.77931 0.79524 0.77872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 2 C 0.12 4.02 2.88 44.99 0.13 4.15 16 3 H 0.04 1.73 7.58 -2.39 -0.02 1.71 16 4 C 0.14 4.72 5.36 86.38 0.46 5.18 16 5 N -0.61 -26.87 2.82 -726.93 -2.05 -28.92 16 6 C 0.18 8.33 9.02 127.77 1.15 9.48 16 7 C -0.24 -11.51 8.02 84.03 0.67 -10.83 16 8 H 0.08 3.50 7.86 -2.91 -0.02 3.48 16 9 C -0.04 -2.13 5.06 84.86 0.43 -1.70 16 10 N -0.93 -51.47 10.66 21.65 0.23 -51.24 16 11 Si 0.95 41.71 29.58 68.60 2.03 43.74 16 12 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 15 N -0.69 -22.90 4.49 -442.52 -1.99 -24.89 16 16 C 0.52 17.39 7.51 87.66 0.66 18.05 16 17 O -0.59 -22.41 13.63 -3.03 -0.04 -22.45 16 18 C -0.14 -3.87 5.17 29.85 0.15 -3.71 16 19 C 0.16 4.08 2.70 44.99 0.12 4.20 16 20 H 0.12 2.72 7.90 -2.38 -0.02 2.70 16 21 C -0.16 -4.47 8.99 71.98 0.65 -3.83 16 22 N -0.45 -11.05 2.62 -506.54 -1.33 -12.37 16 23 C -0.05 -1.07 11.54 83.09 0.96 -0.11 16 24 C -0.05 -1.31 11.87 83.53 0.99 -0.32 16 25 N -0.53 -16.27 11.25 -200.31 -2.25 -18.52 16 26 C 0.17 4.79 11.65 180.26 2.10 6.89 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 2.03 8.03 -2.39 -0.02 2.02 16 31 H 0.07 2.15 7.86 -2.39 -0.02 2.13 16 32 H 0.00 -0.24 7.40 -2.39 -0.02 -0.26 16 33 H 0.02 0.82 7.21 -2.39 -0.02 0.80 16 34 H 0.03 1.08 7.84 -2.39 -0.02 1.06 16 35 H 0.24 13.42 8.31 -92.71 -0.77 12.65 16 36 H 0.41 13.30 7.40 -92.71 -0.69 12.61 16 37 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.09 2.83 8.08 -2.39 -0.02 2.81 16 39 H 0.05 1.58 7.95 -2.39 -0.02 1.56 16 40 H 0.08 2.61 5.95 -2.39 -0.01 2.59 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 44 H 0.20 5.33 8.06 -2.91 -0.02 5.31 16 Total: -1.00 -64.12 359.87 4.06 -60.06 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.29 Total: 30.12 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 9.16 Total: 24.47 kcal Atomic # 7 Polarization: -128.56 SS G_CDS: -7.38 Total: -135.94 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -64.12 4.06 -60.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.535 kcal (2) G-P(sol) polarization free energy of solvation -64.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds