Wall clock time and date at job start Fri Apr 10 2020 20:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47398 * 2 1 4 4 C 1.53000 * 109.47586 * 239.99414 * 2 1 3 5 5 C 1.50708 * 109.46726 * 65.00331 * 4 2 1 6 6 O 1.21280 * 119.99790 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99964 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00054 * 180.27361 * 7 5 4 9 9 H 1.08993 * 109.47160 * 324.72218 * 8 7 5 10 10 C 1.53002 * 109.47258 * 84.72165 * 8 7 5 11 11 C 1.53002 * 109.47272 * 204.71907 * 8 7 5 12 12 N 1.46508 * 109.46713 * 55.00181 * 11 8 7 13 13 C 1.46496 * 119.99665 * 269.99580 * 12 11 8 14 14 C 1.36933 * 119.99879 * 90.00220 * 12 11 8 15 15 H 1.08004 * 120.00578 * 20.37189 * 14 12 11 16 16 C 1.38815 * 119.99787 * 200.37909 * 14 12 11 17 17 N 1.31614 * 119.99856 * 15.00206 * 16 14 12 18 18 Si 1.86802 * 120.00151 * 195.00235 * 16 14 12 19 19 H 1.48494 * 109.46889 * 84.99703 * 18 16 14 20 20 H 1.48496 * 109.47359 * 205.00504 * 18 16 14 21 21 H 1.48506 * 109.46872 * 325.00234 * 18 16 14 22 22 N 1.46508 * 109.46828 * 119.99720 * 2 1 3 23 23 C 1.36882 * 126.39683 * 239.71140 * 22 2 1 24 24 C 1.34665 * 106.81709 * 179.84429 * 23 22 2 25 25 N 1.34126 * 108.02212 * 0.42305 * 24 23 22 26 26 C 1.30498 * 109.25580 * 359.73509 * 25 24 23 27 27 H 1.09001 * 109.46687 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46998 * 300.00080 * 1 2 3 29 29 H 1.08997 * 109.46529 * 60.00295 * 1 2 3 30 30 H 1.09000 * 109.47338 * 305.00845 * 4 2 1 31 31 H 1.08994 * 109.47539 * 185.00036 * 4 2 1 32 32 H 0.97001 * 119.99919 * 359.97438 * 7 5 4 33 33 H 1.08992 * 109.47368 * 180.02562 * 10 8 7 34 34 H 1.09004 * 109.46919 * 300.00092 * 10 8 7 35 35 H 1.09001 * 109.47294 * 59.99941 * 10 8 7 36 36 H 1.09004 * 109.46892 * 175.00056 * 11 8 7 37 37 H 1.08999 * 109.47027 * 295.00226 * 11 8 7 38 38 H 1.09003 * 109.46803 * 95.13206 * 13 12 11 39 39 H 1.09003 * 109.47086 * 215.12888 * 13 12 11 40 40 H 1.08995 * 109.47617 * 335.13165 * 13 12 11 41 41 H 0.97005 * 119.99895 * 179.97438 * 17 16 14 42 42 H 1.08003 * 126.59175 * 359.97438 * 23 22 2 43 43 H 1.08001 * 125.99472 * 180.12257 * 24 23 22 44 44 H 1.07998 * 125.65391 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6415 0.0570 -2.4766 6 8 1.0111 1.0868 -2.3633 7 7 1.9847 -0.3920 -3.7001 8 6 1.6024 0.3676 -4.8929 9 1 0.6260 0.8255 -4.7347 10 6 2.6410 1.4597 -5.1567 11 6 1.5352 -0.5737 -6.0973 12 7 0.6296 -1.6857 -5.7978 13 6 1.1501 -2.9085 -5.1813 14 6 -0.7033 -1.5822 -6.0943 15 1 -1.0399 -0.8597 -6.8231 16 6 -1.6219 -2.4057 -5.4579 17 7 -1.2724 -3.0686 -4.3759 18 14 -3.3539 -2.5733 -6.1374 19 1 -3.3711 -3.6124 -7.1980 20 1 -4.2787 -2.9663 -5.0440 21 1 -3.7886 -1.2740 -6.7103 22 7 2.0183 -0.6906 1.1963 23 6 2.8129 -0.1569 2.1748 24 6 3.0183 -1.1294 3.0834 25 7 2.3746 -2.2297 2.6663 26 6 1.7734 -1.9743 1.5366 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.6054 -1.7199 -1.2951 31 1 3.1264 -0.7996 -1.2055 32 1 2.4886 -1.2159 -3.7906 33 1 2.3564 2.0252 -6.0439 34 1 2.6890 2.1304 -4.2987 35 1 3.6175 1.0019 -5.3150 36 1 1.1654 -0.0275 -6.9651 37 1 2.5307 -0.9630 -6.3101 38 1 1.0188 -2.8548 -4.1006 39 1 0.6085 -3.7706 -5.5707 40 1 2.2100 -3.0100 -5.4140 41 1 -1.9145 -3.6438 -3.9310 42 1 3.1990 0.8511 2.2121 43 1 3.6033 -1.0405 3.9869 44 1 1.1788 -2.6738 0.9678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:23 Heat of formation + Delta-G solvation = 44.959965 kcal Electronic energy + Delta-G solvation = -24516.972710 eV Core-core repulsion = 21085.321721 eV Total energy + Delta-G solvation = -3431.650989 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.05572 -39.56647 -36.74056 -35.41264 -34.08402 -31.60808 -30.89324 -30.23653 -29.17061 -27.68241 -26.26693 -25.66937 -23.49503 -21.97270 -21.31229 -20.73268 -20.09125 -19.68890 -17.50138 -16.87071 -16.31400 -15.62363 -15.45190 -15.07517 -14.91521 -14.34445 -13.93213 -13.83075 -13.62916 -13.46270 -13.39565 -13.08527 -12.89404 -12.73769 -12.23394 -12.08841 -11.76131 -11.52276 -11.47327 -11.22621 -11.12927 -10.90699 -10.84113 -10.61190 -10.29037 -10.03834 -9.92949 -9.90077 -9.64390 -9.40401 -8.67972 -8.48836 -8.45591 -6.86272 -5.80432 -3.23166 2.10052 2.71294 3.02725 3.22290 3.35056 3.42006 3.42398 3.70767 4.45375 4.48554 4.72628 4.77813 4.87135 5.01304 5.21370 5.29854 5.39478 5.42286 5.47756 5.57942 5.60723 5.67776 5.75653 5.82511 5.90359 5.91689 6.01874 6.15462 6.30046 6.38555 6.41256 6.46314 6.55129 6.76569 6.78961 7.06449 7.22864 7.24054 7.55502 7.74199 7.97317 8.12296 8.30212 8.65360 9.15529 9.78545 10.25292 11.25113 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.004412 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.082695 B = 6344.468260 C = 7313.267517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 H 0.106 0.894 4 C -0.153 4.153 5 C 0.525 3.475 6 O -0.551 6.551 7 N -0.694 5.694 8 C 0.117 3.883 9 H 0.086 0.914 10 C -0.159 4.159 11 C 0.142 3.858 12 N -0.597 5.597 13 C 0.162 3.838 14 C -0.257 4.257 15 H 0.069 0.931 16 C 0.006 3.994 17 N -0.905 5.905 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.280 1.280 22 N -0.451 5.451 23 C -0.059 4.059 24 C -0.036 4.036 25 N -0.500 5.500 26 C 0.186 3.814 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.396 0.604 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.030 0.970 39 H 0.043 0.957 40 H -0.005 1.005 41 H 0.252 0.748 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 5.671 6.571 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.124 0.876 4 C -0.194 4.194 5 C 0.310 3.690 6 O -0.431 6.431 7 N -0.343 5.343 8 C 0.009 3.991 9 H 0.104 0.896 10 C -0.218 4.218 11 C 0.014 3.986 12 N -0.319 5.319 13 C 0.017 3.983 14 C -0.386 4.386 15 H 0.087 0.913 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.206 1.206 22 N -0.133 5.133 23 C -0.192 4.192 24 C -0.185 4.185 25 N -0.219 5.219 26 C -0.096 4.096 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.230 0.770 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.014 0.986 41 H 0.062 0.938 42 H 0.188 0.812 43 H 0.183 0.817 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.371 5.582 6.999 12.960 hybrid contribution -0.749 0.193 -0.684 1.033 sum 8.622 5.775 6.314 12.147 Atomic orbital electron populations 1.22284 0.92055 1.03491 1.04481 1.21163 0.96503 0.96435 0.80986 0.87635 1.21991 1.03045 1.01634 0.92709 1.19933 0.79204 0.85334 0.84521 1.90635 1.40492 1.25272 1.86654 1.45765 1.56290 1.26809 1.05408 1.21893 0.98086 0.92527 0.86574 0.89562 1.22152 0.99146 0.99038 1.01473 1.21192 0.93719 0.89463 0.94216 1.43912 1.04733 1.11135 1.72149 1.20843 0.91529 0.88724 0.97222 1.19188 0.82425 1.19648 1.17349 0.91334 1.24905 0.97723 1.00700 0.95945 1.70045 1.34461 1.32566 1.17934 0.86306 0.84432 0.77970 0.78028 1.21504 1.21785 1.20597 1.45866 1.37366 1.11488 1.18596 1.22737 1.02594 1.01307 0.92580 1.22259 1.05039 0.89838 1.01323 1.70306 1.12704 1.28168 1.10684 1.24963 1.03489 0.85484 0.95706 0.91868 0.92369 0.87964 0.87676 0.88814 0.76990 0.92045 0.93013 0.93213 0.92250 0.94003 0.95148 0.93783 0.98635 0.93832 0.81236 0.81694 0.78107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 8.98 37.16 0.33 -1.94 16 2 C 0.15 1.88 2.70 -67.93 -0.18 1.70 16 3 H 0.11 1.28 7.90 -51.93 -0.41 0.87 16 4 C -0.15 -1.95 5.17 -27.88 -0.14 -2.09 16 5 C 0.52 8.53 7.51 -10.98 -0.08 8.45 16 6 O -0.55 -10.47 13.63 5.56 0.08 -10.40 16 7 N -0.69 -11.26 4.42 -53.81 -0.24 -11.49 16 8 C 0.12 2.01 2.88 -67.93 -0.20 1.81 16 9 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 10 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 11 C 0.14 2.59 5.33 -4.04 -0.02 2.57 16 12 N -0.60 -13.59 2.78 -181.11 -0.50 -14.10 16 13 C 0.16 3.54 7.60 59.84 0.45 4.00 16 14 C -0.26 -6.68 9.68 -15.06 -0.15 -6.83 16 15 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 16 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 17 N -0.91 -24.83 10.67 55.49 0.59 -24.24 16 18 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 N -0.45 -5.53 2.62 -111.45 -0.29 -5.83 16 23 C -0.06 -0.67 11.54 -16.56 -0.19 -0.86 16 24 C -0.04 -0.45 11.87 -17.81 -0.21 -0.67 16 25 N -0.50 -7.39 11.25 -14.67 -0.17 -7.56 16 26 C 0.19 2.48 11.65 -90.37 -1.05 1.43 16 27 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 1.68 5.95 -51.93 -0.31 1.37 16 30 H 0.10 1.37 8.08 -51.93 -0.42 0.95 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 5.94 7.19 -40.82 -0.29 5.65 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.06 8.03 -51.93 -0.42 0.65 16 37 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 38 H 0.03 0.70 6.97 -51.93 -0.36 0.34 16 39 H 0.04 1.08 7.22 -51.93 -0.37 0.71 16 40 H 0.00 -0.09 7.83 -51.93 -0.41 -0.50 16 41 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -30.90 359.33 -8.46 -39.36 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.14 Total: 6.69 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.18 Total: 5.77 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.61 Total: -63.21 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.90 -8.46 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.317 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds