Wall clock time and date at job start Fri Apr 10 2020 20:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47372 * 2 1 4 4 C 1.52995 * 109.46847 * 119.99852 * 2 1 3 5 5 N 1.46505 * 109.47358 * 174.99648 * 4 2 1 6 6 C 1.46494 * 120.00004 * 270.00553 * 5 4 2 7 7 C 1.36939 * 119.99908 * 89.99707 * 5 4 2 8 8 H 1.08002 * 119.99731 * 20.38401 * 7 5 4 9 9 C 1.38810 * 120.00242 * 200.38607 * 7 5 4 10 10 N 1.31624 * 119.99836 * 15.00420 * 9 7 5 11 11 Si 1.86796 * 119.99893 * 195.00546 * 9 7 5 12 12 H 1.48503 * 109.47338 * 85.00595 * 11 9 7 13 13 H 1.48506 * 109.46878 * 204.99699 * 11 9 7 14 14 H 1.48490 * 109.47394 * 324.99837 * 11 9 7 15 15 N 1.46496 * 109.47090 * 239.99669 * 2 1 3 16 16 C 1.34779 * 119.99931 * 85.00240 * 15 2 1 17 17 O 1.21277 * 119.99855 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99934 * 180.02562 * 16 15 2 19 19 C 1.53002 * 109.46647 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.47135 * 55.00160 * 19 18 16 21 21 C 1.52991 * 109.47559 * 294.99764 * 19 18 16 22 22 N 1.46501 * 109.46850 * 174.99779 * 19 18 16 23 23 C 1.36885 * 126.39882 * 240.00462 * 22 19 18 24 24 C 1.34673 * 106.81561 * 179.97438 * 23 22 19 25 25 N 1.34128 * 108.02089 * 0.02562 * 24 23 22 26 26 C 1.30493 * 109.25629 * 359.97438 * 25 24 23 27 27 H 1.09007 * 109.46827 * 60.00033 * 1 2 3 28 28 H 1.08999 * 109.47372 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47223 * 300.00585 * 1 2 3 30 30 H 1.08997 * 109.47672 * 294.99532 * 4 2 1 31 31 H 1.09001 * 109.47437 * 54.99877 * 4 2 1 32 32 H 1.09003 * 109.47652 * 95.12199 * 6 5 4 33 33 H 1.09002 * 109.46930 * 215.12102 * 6 5 4 34 34 H 1.08996 * 109.47447 * 335.12080 * 6 5 4 35 35 H 0.96994 * 120.00001 * 180.02562 * 10 9 7 36 36 H 0.97001 * 120.00318 * 265.00956 * 15 2 1 37 37 H 1.09000 * 109.47309 * 60.00319 * 18 16 15 38 38 H 1.09002 * 109.47008 * 299.99658 * 18 16 15 39 39 H 1.09000 * 109.47320 * 180.02562 * 21 19 18 40 40 H 1.09000 * 109.47221 * 300.00344 * 21 19 18 41 41 H 1.09001 * 109.47122 * 59.99853 * 21 19 18 42 42 H 1.07994 * 126.59122 * 359.72874 * 23 22 19 43 43 H 1.08003 * 125.98707 * 179.97438 * 24 23 22 44 44 H 1.08002 * 125.64856 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5613 7 6 4.2799 0.1647 1.7240 8 1 3.8671 0.8401 2.4588 9 6 5.6009 0.3015 1.3204 10 7 6.0234 -0.3086 0.2333 11 14 6.7791 1.3513 2.3200 12 1 7.3499 0.5396 3.4248 13 1 7.8760 1.8353 1.4437 14 1 6.0482 2.5134 2.8859 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6489 -0.7290 -3.5877 19 6 2.6999 0.2541 -4.7590 20 1 3.3015 1.1195 -4.4812 21 6 1.2808 0.7094 -5.1050 22 7 3.2990 -0.4038 -5.9229 23 6 4.4356 -0.0157 -6.5797 24 6 4.6252 -0.8942 -7.5826 25 7 3.6313 -1.7939 -7.5397 26 6 2.8333 -1.5065 -6.5480 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.7517 -0.1583 2.1370 31 1 1.6053 -1.7198 1.2952 32 1 4.3627 -1.7608 -0.4772 33 1 5.0416 -2.2453 1.0953 34 1 3.4384 -2.8372 0.5975 35 1 6.9466 -0.2133 -0.0486 36 1 2.2489 -1.6319 -1.1526 37 1 1.9759 -1.5507 -3.8326 38 1 3.6480 -1.1215 -3.3986 39 1 1.3172 1.4093 -5.9397 40 1 0.6792 -0.1560 -5.3829 41 1 0.8350 1.1988 -4.2390 42 1 5.0580 0.8342 -6.3419 43 1 5.4352 -0.8769 -8.2968 44 1 1.9467 -2.0587 -6.2732 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:25 Heat of formation + Delta-G solvation = 44.925867 kcal Electronic energy + Delta-G solvation = -24461.118461 eV Core-core repulsion = 21029.465994 eV Total energy + Delta-G solvation = -3431.652467 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04777 -39.56915 -36.74741 -35.42883 -34.08314 -31.60651 -30.89942 -30.25840 -29.16532 -27.73750 -26.26697 -25.67350 -23.53690 -21.96546 -21.30457 -20.73411 -20.08725 -19.70540 -17.50876 -16.87644 -16.31563 -15.76421 -15.35985 -15.01360 -14.74905 -14.60834 -13.94920 -13.81996 -13.68056 -13.42076 -13.31333 -13.08313 -12.98137 -12.77512 -12.28518 -12.17286 -11.77460 -11.53983 -11.47264 -11.30407 -11.15379 -10.90623 -10.84246 -10.61191 -10.29249 -10.04043 -9.93759 -9.90598 -9.63682 -9.39514 -8.68038 -8.47228 -8.45787 -6.86302 -5.80260 -3.23290 2.11898 2.72662 3.01593 3.22951 3.34907 3.41657 3.42239 3.71358 4.43729 4.45644 4.72283 4.74070 4.88193 5.00775 5.19954 5.29556 5.35944 5.40160 5.43844 5.53420 5.60571 5.69362 5.74131 5.80026 5.80735 5.91143 6.01832 6.11639 6.16545 6.36932 6.38680 6.45196 6.54920 6.78285 6.78971 7.06375 7.23144 7.23992 7.55781 7.74118 7.97405 8.11633 8.30277 8.65413 9.15418 9.78605 10.25204 11.25246 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014482 B = 0.004484 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.955774 B = 6243.426410 C = 7365.962425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.086 0.914 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.257 4.257 8 H 0.069 0.931 9 C 0.005 3.995 10 N -0.906 5.906 11 Si 0.903 3.097 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.694 5.694 16 C 0.525 3.475 17 O -0.551 6.551 18 C -0.152 4.152 19 C 0.150 3.850 20 H 0.110 0.890 21 C -0.164 4.164 22 N -0.450 5.450 23 C -0.050 4.050 24 C -0.037 4.037 25 N -0.500 5.500 26 C 0.179 3.821 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.043 0.957 34 H -0.004 1.004 35 H 0.251 0.749 36 H 0.396 0.604 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.172 0.828 43 H 0.167 0.833 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 -2.312 -8.562 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.104 0.896 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.087 0.913 9 C -0.194 4.194 10 N -0.550 5.550 11 Si 0.733 3.267 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.343 5.343 16 C 0.310 3.690 17 O -0.430 6.430 18 C -0.193 4.193 19 C 0.047 3.953 20 H 0.128 0.872 21 C -0.221 4.221 22 N -0.133 5.133 23 C -0.184 4.184 24 C -0.185 4.185 25 N -0.218 5.218 26 C -0.104 4.104 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.230 0.770 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.189 0.811 43 H 0.184 0.816 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.350 -2.077 -9.048 13.176 hybrid contribution 1.145 0.807 1.034 1.741 sum -8.204 -1.270 -8.014 11.539 Atomic orbital electron populations 1.22148 0.96794 1.01098 1.01717 1.21894 0.91682 0.99172 0.86355 0.89595 1.21193 0.85732 0.97286 0.94391 1.43920 0.99076 1.20866 1.68094 1.20841 0.94622 0.85089 0.97767 1.19190 0.92968 1.09684 1.16755 0.91301 1.24923 0.98562 0.99399 0.96487 1.70052 1.15954 1.46850 1.22188 0.86293 0.80908 0.80018 0.79439 1.21478 1.21813 1.20573 1.45769 1.65555 1.13740 1.09221 1.19935 0.77479 0.87114 0.84443 1.90632 1.51411 1.15812 1.85193 1.21977 1.04712 0.99259 0.93336 1.21169 0.96651 0.95336 0.82188 0.87215 1.22279 0.94077 1.01869 1.03893 1.45807 1.20529 1.22773 1.24143 1.22816 0.92619 1.04458 0.98484 1.22252 1.00441 0.94760 1.01033 1.70269 1.05162 1.26912 1.19468 1.24803 1.01824 0.90375 0.93369 0.92988 0.93192 0.92059 0.92246 0.93980 0.95200 0.93792 0.98594 0.93841 0.76993 0.88721 0.87775 0.92165 0.92430 0.88200 0.81054 0.81599 0.78444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 2 C 0.12 2.01 2.88 -67.93 -0.20 1.81 16 3 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 4 C 0.14 2.60 5.33 -4.04 -0.02 2.57 16 5 N -0.60 -13.73 2.78 -181.12 -0.50 -14.24 16 6 C 0.16 3.59 7.60 59.84 0.45 4.05 16 7 C -0.26 -6.74 9.68 -15.06 -0.15 -6.89 16 8 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 9 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 10 N -0.91 -25.30 10.67 55.49 0.59 -24.71 16 11 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 N -0.69 -11.28 4.42 -53.81 -0.24 -11.52 16 16 C 0.53 8.55 7.51 -10.98 -0.08 8.47 16 17 O -0.55 -10.48 13.63 5.56 0.08 -10.41 16 18 C -0.15 -1.95 5.17 -27.88 -0.14 -2.09 16 19 C 0.15 1.85 2.70 -67.93 -0.18 1.67 16 20 H 0.11 1.53 7.90 -51.93 -0.41 1.12 16 21 C -0.16 -1.83 8.98 37.15 0.33 -1.50 16 22 N -0.45 -5.60 2.62 -111.46 -0.29 -5.89 16 23 C -0.05 -0.63 11.54 -16.56 -0.19 -0.82 16 24 C -0.04 -0.48 11.87 -17.81 -0.21 -0.70 16 25 N -0.50 -7.27 11.25 -14.66 -0.16 -7.43 16 26 C 0.18 2.22 11.65 -90.38 -1.05 1.17 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 31 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 32 H 0.03 0.70 6.97 -51.93 -0.36 0.34 16 33 H 0.04 1.09 7.22 -51.93 -0.37 0.72 16 34 H 0.00 -0.08 7.83 -51.93 -0.41 -0.49 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.40 5.96 7.18 -40.82 -0.29 5.66 16 37 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.55 7.95 -51.93 -0.41 0.14 16 41 H 0.10 1.30 5.95 -51.93 -0.31 0.99 16 42 H 0.17 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.17 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -31.57 359.33 -8.46 -40.03 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.14 Total: 6.22 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.18 Total: 5.97 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.61 Total: -63.79 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.57 -8.46 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.956 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds