Wall clock time and date at job start Fri Apr 10 2020 20:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.53004 * 109.46755 * 239.99760 * 2 1 3 5 5 N 1.46500 * 109.46638 * 185.00324 * 4 2 1 6 6 C 1.46498 * 119.99985 * 269.99872 * 5 4 2 7 7 C 1.36943 * 120.00007 * 90.00212 * 5 4 2 8 8 H 1.07993 * 119.99962 * 20.30285 * 7 5 4 9 9 C 1.38810 * 119.99875 * 200.30426 * 7 5 4 10 10 N 1.31617 * 120.00192 * 15.01243 * 9 7 5 11 11 Si 1.86803 * 119.99815 * 195.01577 * 9 7 5 12 12 H 1.48495 * 109.47032 * 85.00247 * 11 9 7 13 13 H 1.48506 * 109.46755 * 204.99979 * 11 9 7 14 14 H 1.48495 * 109.47142 * 324.99807 * 11 9 7 15 15 N 1.46503 * 109.46805 * 119.99854 * 2 1 3 16 16 C 1.34770 * 119.99987 * 274.99888 * 15 2 1 17 17 O 1.21275 * 120.00109 * 359.72413 * 16 15 2 18 18 C 1.50703 * 119.99767 * 180.02562 * 16 15 2 19 19 C 1.53001 * 109.46787 * 179.72497 * 18 16 15 20 20 H 1.08997 * 109.47303 * 304.99050 * 19 18 16 21 21 C 1.53000 * 109.47457 * 64.99864 * 19 18 16 22 22 N 1.46505 * 109.46857 * 184.99822 * 19 18 16 23 23 C 1.36887 * 126.39771 * 119.71327 * 22 19 18 24 24 C 1.34671 * 106.81608 * 179.84199 * 23 22 19 25 25 N 1.34127 * 108.01776 * 0.42188 * 24 23 22 26 26 C 1.30493 * 109.26344 * 359.73185 * 25 24 23 27 27 H 1.08991 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47164 * 300.00512 * 1 2 3 29 29 H 1.08997 * 109.46774 * 59.99853 * 1 2 3 30 30 H 1.09003 * 109.47143 * 305.00053 * 4 2 1 31 31 H 1.08995 * 109.47119 * 65.00630 * 4 2 1 32 32 H 1.09000 * 109.47475 * 95.10910 * 6 5 4 33 33 H 1.09002 * 109.47369 * 215.10320 * 6 5 4 34 34 H 1.08999 * 109.47396 * 335.10600 * 6 5 4 35 35 H 0.97000 * 120.00357 * 180.02562 * 10 9 7 36 36 H 0.97005 * 119.99837 * 94.99724 * 15 2 1 37 37 H 1.09003 * 109.47129 * 299.72060 * 18 16 15 38 38 H 1.08996 * 109.47560 * 59.71884 * 18 16 15 39 39 H 1.09001 * 109.46996 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.46937 * 300.00130 * 21 19 18 41 41 H 1.09001 * 109.46764 * 59.99815 * 21 19 18 42 42 H 1.08001 * 126.58847 * 359.97438 * 23 22 19 43 43 H 1.07996 * 125.98569 * 180.11490 * 24 23 22 44 44 H 1.07998 * 125.65604 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1905 6 6 4.3344 0.2338 -1.7612 7 6 4.0849 -1.9161 -0.6022 8 1 3.5228 -2.8299 -0.4789 9 6 5.4002 -1.8458 -0.1643 10 7 5.9902 -0.6761 -0.0379 11 14 6.3330 -3.4116 0.2455 12 1 6.9256 -3.9737 -0.9946 13 1 7.4146 -3.1038 1.2155 14 1 5.4005 -4.4016 0.8416 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8634 1.1597 2.4103 18 6 2.6498 -0.7286 3.5875 19 6 2.7077 0.2562 4.7570 20 1 3.3117 1.1190 4.4760 21 6 1.2912 0.7172 5.1062 22 7 3.3078 -0.4018 5.9203 23 6 4.4505 -0.0198 6.5699 24 6 4.6365 -0.8936 7.5776 25 7 3.6397 -1.7903 7.5385 26 6 2.8400 -1.5020 6.5484 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6053 -1.7199 -1.2951 31 1 1.7517 -0.1584 -2.1370 32 1 4.6153 0.9369 -0.9771 33 1 5.2331 -0.2047 -2.1949 34 1 3.7756 0.7583 -2.5363 35 1 6.9095 -0.6270 0.2677 36 1 2.2490 -1.6318 1.1527 37 1 1.9749 -1.5478 3.8354 38 1 3.6471 -1.1247 3.3963 39 1 1.3324 1.4185 5.9397 40 1 0.8447 1.2068 4.2407 41 1 0.6873 -0.1456 5.3872 42 1 5.0806 0.8220 6.3231 43 1 5.4488 -0.8782 8.2891 44 1 1.9516 -2.0524 6.2761 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:27 Heat of formation + Delta-G solvation = 43.650324 kcal Electronic energy + Delta-G solvation = -24656.140306 eV Core-core repulsion = 21224.432527 eV Total energy + Delta-G solvation = -3431.707779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99270 -39.46024 -36.69561 -35.37222 -34.03242 -31.62039 -30.87379 -30.14374 -29.11218 -27.64189 -26.25420 -25.69245 -23.47228 -21.95457 -21.26109 -20.74839 -19.91850 -19.63350 -17.45997 -16.84360 -16.14813 -15.75631 -15.29538 -15.00536 -14.75491 -14.51870 -13.93298 -13.76462 -13.65028 -13.33398 -13.31126 -12.98162 -12.91519 -12.73959 -12.30520 -12.11882 -11.71717 -11.49549 -11.41046 -11.38128 -11.18837 -10.91447 -10.77646 -10.49320 -10.34111 -10.12631 -9.90799 -9.88716 -9.57843 -9.30361 -8.65482 -8.42018 -8.38459 -6.89948 -5.83410 -3.28063 2.17108 2.79308 3.11563 3.27939 3.28605 3.35669 3.38572 3.83691 4.38614 4.52114 4.77810 4.81978 4.95032 5.07545 5.25151 5.31527 5.40736 5.46324 5.48954 5.58275 5.59688 5.74875 5.79721 5.85942 5.88726 5.90242 6.08255 6.14812 6.18796 6.37357 6.41372 6.43430 6.66153 6.79791 6.83231 7.16784 7.28684 7.29457 7.60972 7.70212 8.14836 8.16889 8.26021 8.78331 9.10604 9.75429 10.24523 11.20327 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.005567 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.068527 B = 5028.397996 C = 6593.564219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.683 5.683 16 C 0.525 3.475 17 O -0.561 6.561 18 C -0.152 4.152 19 C 0.150 3.850 20 H 0.109 0.891 21 C -0.163 4.163 22 N -0.450 5.450 23 C -0.051 4.051 24 C -0.037 4.037 25 N -0.500 5.500 26 C 0.179 3.821 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.042 0.958 34 H -0.003 1.003 35 H 0.253 0.747 36 H 0.405 0.595 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 1.319 6.455 10.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.388 4.388 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.331 5.331 16 C 0.310 3.690 17 O -0.442 6.442 18 C -0.193 4.193 19 C 0.047 3.953 20 H 0.127 0.873 21 C -0.220 4.220 22 N -0.132 5.132 23 C -0.184 4.184 24 C -0.185 4.185 25 N -0.219 5.219 26 C -0.103 4.103 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.241 0.759 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.189 0.811 43 H 0.184 0.816 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -8.924 1.596 6.910 11.399 hybrid contribution 1.070 -0.603 -0.333 1.272 sum -7.854 0.993 6.577 10.293 Atomic orbital electron populations 1.22151 0.96829 1.01261 1.01566 1.21848 0.91783 0.98400 0.86974 0.90494 1.21186 0.85917 0.97938 0.93643 1.43909 0.98912 1.22673 1.66552 1.20792 0.92915 0.90411 0.94030 1.19060 0.95989 0.89888 1.33847 0.91534 1.24933 0.98509 0.96175 0.99625 1.70088 1.12778 1.21767 1.49541 0.86426 0.80029 0.83101 0.77871 1.21407 1.21775 1.20539 1.45699 1.64537 1.14432 1.08480 1.19911 0.77432 0.87033 0.84595 1.90606 1.52314 1.15843 1.85438 1.21963 1.04866 0.99174 0.93295 1.21176 0.96563 0.95309 0.82253 0.87309 1.22274 0.94162 1.01806 1.03800 1.45815 1.20164 1.22980 1.24235 1.22802 0.92425 1.04677 0.98538 1.22241 1.00396 0.94916 1.00980 1.70261 1.05155 1.26780 1.19680 1.24805 1.01819 0.90316 0.93354 0.93013 0.92977 0.92241 0.93322 0.92938 0.95319 0.93881 0.98413 0.93712 0.75937 0.88793 0.87712 0.92255 0.88191 0.92455 0.81087 0.81640 0.78435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 2 C 0.12 2.02 2.88 -67.92 -0.20 1.83 16 3 H 0.08 1.55 7.57 -51.93 -0.39 1.15 16 4 C 0.14 2.56 5.36 -4.04 -0.02 2.54 16 5 N -0.60 -13.59 2.82 -181.12 -0.51 -14.10 16 6 C 0.16 3.84 9.02 59.85 0.54 4.38 16 7 C -0.26 -6.29 8.02 -15.06 -0.12 -6.41 16 8 H 0.07 1.56 7.86 -52.49 -0.41 1.15 16 9 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 10 N -0.90 -24.61 10.67 55.49 0.59 -24.02 16 11 Si 0.90 20.62 29.58 -169.99 -5.03 15.59 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 N -0.68 -11.80 4.49 -53.80 -0.24 -12.04 16 16 C 0.53 8.95 7.51 -10.99 -0.08 8.87 16 17 O -0.56 -10.77 13.63 5.56 0.08 -10.70 16 18 C -0.15 -2.14 5.17 -27.88 -0.14 -2.29 16 19 C 0.15 1.97 2.70 -67.93 -0.18 1.79 16 20 H 0.11 1.57 7.90 -51.93 -0.41 1.16 16 21 C -0.16 -1.91 8.98 37.16 0.33 -1.58 16 22 N -0.45 -5.98 2.62 -111.45 -0.29 -6.27 16 23 C -0.05 -0.67 11.54 -16.56 -0.19 -0.86 16 24 C -0.04 -0.52 11.87 -17.81 -0.21 -0.73 16 25 N -0.50 -7.72 11.25 -14.67 -0.16 -7.88 16 26 C 0.18 2.41 11.65 -90.38 -1.05 1.35 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.83 8.03 -51.93 -0.42 0.42 16 31 H 0.05 0.87 7.86 -51.93 -0.41 0.47 16 32 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 33 H 0.04 1.09 7.21 -51.93 -0.37 0.72 16 34 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 35 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.40 6.98 7.40 -40.82 -0.30 6.68 16 37 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.34 5.95 -51.93 -0.31 1.03 16 41 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 42 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 44 H 0.20 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -30.25 359.87 -8.38 -38.63 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.17 Total: 8.23 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -1.07 Total: 7.14 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -0.62 Total: -64.31 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.25 -8.38 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.275 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds