Wall clock time and date at job start Fri Apr 10 2020 20:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46985 * 2 1 4 4 C 1.52997 * 109.47379 * 120.00196 * 2 1 3 5 5 N 1.46508 * 109.47149 * 64.99921 * 4 2 1 6 6 C 1.34774 * 120.00164 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99846 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00089 * 180.02562 * 6 5 4 9 9 H 1.08992 * 109.47068 * 59.99867 * 8 6 5 10 10 C 1.53004 * 109.46837 * 299.99910 * 8 6 5 11 11 N 1.46501 * 109.46950 * 180.02562 * 8 6 5 12 12 C 1.39988 * 119.99747 * 204.99966 * 11 8 6 13 13 C 1.40432 * 125.97374 * 0.02562 * 12 11 8 14 14 C 1.35251 * 107.86019 * 179.73886 * 13 12 11 15 15 N 1.34962 * 107.86128 * 0.42675 * 14 13 12 16 16 C 1.46500 * 125.97410 * 179.83595 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71196 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31219 * 125.97677 * 180.02562 * 12 11 8 26 26 H 1.08994 * 109.47078 * 299.99405 * 1 2 3 27 27 H 1.08991 * 109.47050 * 60.00073 * 1 2 3 28 28 H 1.08998 * 109.46684 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47129 * 240.00075 * 2 1 3 30 30 H 1.08998 * 109.46886 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47487 * 299.99884 * 3 2 1 32 32 H 1.09004 * 109.46671 * 60.00349 * 3 2 1 33 33 H 1.09002 * 109.47237 * 305.00097 * 4 2 1 34 34 H 1.08998 * 109.47232 * 184.99897 * 4 2 1 35 35 H 0.97001 * 119.99445 * 359.97438 * 5 4 2 36 36 H 1.09004 * 109.47220 * 60.00316 * 10 8 6 37 37 H 1.09007 * 109.47066 * 180.02562 * 10 8 6 38 38 H 1.09002 * 109.47272 * 299.99829 * 10 8 6 39 39 H 0.96999 * 120.00325 * 25.00079 * 11 8 6 40 40 H 1.07998 * 126.07497 * 0.02562 * 13 12 11 41 41 H 1.08000 * 126.07179 * 180.26370 * 14 13 12 42 42 H 1.09004 * 109.47078 * 4.71958 * 16 15 14 43 43 H 1.08993 * 109.47364 * 244.71729 * 16 15 14 44 44 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 1.9957 -2.9682 2.1910 7 8 2.6249 -2.5510 3.1402 8 6 1.5975 -4.4203 2.1304 9 1 2.0328 -4.8796 1.2430 10 6 0.0727 -4.5287 2.0649 11 7 2.0848 -5.1106 3.3271 12 6 2.3185 -6.4904 3.2928 13 6 2.1299 -7.3318 2.1844 14 6 2.4708 -8.5874 2.5538 15 7 2.8518 -8.5490 3.8479 16 6 3.2977 -9.6924 4.6480 17 6 4.6566 -9.3990 5.2299 18 1 5.1395 -8.4550 5.0246 19 6 5.2833 -10.3355 6.0242 20 7 4.6929 -11.4829 6.2786 21 14 6.9673 -9.9716 6.7461 22 1 8.0194 -10.4370 5.8070 23 1 7.1079 -8.5091 6.9616 24 1 7.1134 -10.6794 8.0433 25 7 2.7523 -7.2238 4.2907 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6055 -0.2618 2.1370 34 1 3.1264 -0.6444 1.2951 35 1 1.1483 -2.4662 0.4318 36 1 -0.2902 -4.0150 1.1747 37 1 -0.2153 -5.5791 2.0215 38 1 -0.3626 -4.0694 2.9524 39 1 2.2454 -4.6117 4.1433 40 1 1.7796 -7.0291 1.2086 41 1 2.4408 -9.4653 1.9256 42 1 3.3572 -10.5777 4.0149 43 1 2.5874 -9.8700 5.4554 44 1 3.8183 -11.6718 5.9040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:27 Heat of formation + Delta-G solvation = 26.953103 kcal Electronic energy + Delta-G solvation = -23010.973515 eV Core-core repulsion = 19578.541690 eV Total energy + Delta-G solvation = -3432.431825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45387 -39.95807 -37.19325 -35.68510 -33.86297 -33.56408 -31.51215 -29.77957 -28.85191 -27.67542 -26.73049 -26.05319 -23.94477 -22.83124 -20.99449 -20.81474 -20.08688 -19.37988 -17.50446 -17.15138 -16.72674 -16.14855 -15.86692 -15.21017 -14.93994 -14.51872 -14.21674 -14.11361 -13.74964 -13.68326 -13.49765 -13.18796 -12.99597 -12.70843 -12.52178 -12.41385 -12.27210 -12.16102 -11.82400 -11.63225 -11.55146 -11.40373 -11.21035 -11.05733 -10.71489 -10.12652 -10.03949 -9.84348 -9.63155 -9.35444 -8.83731 -8.51107 -7.97297 -7.07016 -6.51003 -4.24534 2.44549 2.69606 2.86026 3.30776 3.41379 3.46837 3.63895 3.70240 4.14464 4.25461 4.38887 4.46549 4.47859 4.56167 4.93764 5.03450 5.05639 5.14729 5.21227 5.22249 5.32858 5.34034 5.40242 5.47408 5.47899 5.62181 5.63632 5.76484 5.81628 5.87498 6.03068 6.13837 6.19633 6.43071 6.57034 6.77346 7.01892 7.17420 7.62482 7.76253 7.95105 7.98542 8.19753 8.44649 8.66751 8.85310 9.43445 10.86039 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.002601 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.591707 B =10761.754399 C =11498.043821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.122 3.878 5 N -0.729 5.729 6 C 0.511 3.489 7 O -0.528 6.528 8 C 0.156 3.844 9 H 0.101 0.899 10 C -0.164 4.164 11 N -0.711 5.711 12 C 0.311 3.689 13 C -0.334 4.334 14 C 0.066 3.934 15 N -0.325 5.325 16 C 0.251 3.749 17 C -0.604 4.604 18 H 0.064 0.936 19 C 0.021 3.979 20 N -0.908 5.908 21 Si 1.079 2.921 22 H -0.286 1.286 23 H -0.286 1.286 24 H -0.282 1.282 25 N -0.326 5.326 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.408 0.592 40 H 0.131 0.869 41 H 0.163 0.837 42 H 0.043 0.957 43 H 0.033 0.967 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 20.460 -17.002 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.204 4.204 4 C -0.001 4.001 5 N -0.383 5.383 6 C 0.296 3.704 7 O -0.403 6.403 8 C 0.045 3.955 9 H 0.119 0.881 10 C -0.223 4.223 11 N -0.355 5.355 12 C 0.054 3.946 13 C -0.367 4.367 14 C -0.085 4.085 15 N -0.104 5.104 16 C 0.132 3.868 17 C -0.642 4.642 18 H 0.082 0.918 19 C -0.183 4.183 20 N -0.544 5.544 21 Si 0.906 3.094 22 H -0.213 1.213 23 H -0.212 1.212 24 H -0.208 1.208 25 N -0.158 5.158 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.245 0.755 40 H 0.149 0.851 41 H 0.180 0.820 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.732 19.968 -14.178 26.000 hybrid contribution -1.676 0.606 -2.041 2.710 sum -10.409 20.574 -16.219 28.190 Atomic orbital electron populations 1.21880 0.94603 1.02001 1.02223 1.21366 0.96526 0.97020 0.97842 1.21766 1.01377 0.94910 1.02300 1.21449 1.00265 0.80252 0.98153 1.45958 1.58600 1.09776 1.23971 1.20849 0.78947 0.88305 0.82315 1.90727 1.38963 1.77567 1.33082 1.20404 0.95197 0.88845 0.91090 0.88084 1.22290 0.94081 1.03920 1.02028 1.43017 1.76827 1.02568 1.13082 1.19102 0.97496 0.85050 0.92920 1.20719 1.23514 0.92461 0.99992 1.22330 0.99717 0.98912 0.87572 1.48739 1.47302 1.06302 1.08039 1.19683 0.96730 0.79886 0.90487 1.22149 1.01894 1.05592 1.34554 0.91800 1.25916 1.05029 0.92770 0.94594 1.70824 1.16704 1.23389 1.43443 0.83395 0.73817 0.75586 0.76616 1.21275 1.21194 1.20759 1.77510 1.28632 0.88529 1.21093 0.92329 0.92333 0.92535 0.90439 0.92256 0.92117 0.92264 0.91354 0.91373 0.76456 0.91902 0.90530 0.91889 0.75467 0.85079 0.82005 0.93939 0.94961 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.07 37.16 0.34 -0.33 16 2 C -0.11 -0.55 2.96 -90.62 -0.27 -0.81 16 3 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 4 C 0.12 0.94 5.07 -4.04 -0.02 0.92 16 5 N -0.73 -5.90 5.18 -60.29 -0.31 -6.21 16 6 C 0.51 6.20 7.22 -10.99 -0.08 6.12 16 7 O -0.53 -8.75 15.84 5.56 0.09 -8.66 16 8 C 0.16 1.85 2.98 -69.08 -0.21 1.65 16 9 H 0.10 1.09 7.14 -51.93 -0.37 0.72 16 10 C -0.16 -1.52 9.40 37.16 0.35 -1.17 16 11 N -0.71 -11.92 5.16 -54.70 -0.28 -12.20 16 12 C 0.31 6.24 8.14 -154.55 -1.26 4.98 16 13 C -0.33 -5.92 9.92 -39.82 -0.40 -6.31 16 14 C 0.07 1.29 11.44 -17.24 -0.20 1.09 16 15 N -0.32 -7.75 3.67 -62.56 -0.23 -7.98 16 16 C 0.25 6.52 5.57 -5.19 -0.03 6.49 16 17 C -0.60 -17.57 9.24 -34.44 -0.32 -17.89 16 18 H 0.06 1.97 7.81 -52.49 -0.41 1.56 16 19 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 20 N -0.91 -27.04 13.65 55.43 0.76 -26.28 16 21 Si 1.08 25.88 29.90 -169.99 -5.08 20.80 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 N -0.33 -7.97 12.42 31.41 0.39 -7.58 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.23 7.18 -51.93 -0.37 -0.14 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 2.08 7.07 -40.82 -0.29 1.80 16 36 H 0.06 0.37 7.56 -51.93 -0.39 -0.02 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.41 7.36 7.92 -40.82 -0.32 7.04 16 40 H 0.13 1.83 7.45 -52.49 -0.39 1.44 16 41 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 42 H 0.04 1.06 7.94 -51.93 -0.41 0.65 16 43 H 0.03 0.88 8.00 -51.93 -0.42 0.46 16 44 H 0.27 7.75 7.22 -40.82 -0.29 7.46 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -35.21 367.56 -8.09 -43.30 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.12 Total: 4.37 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.84 Total: -5.10 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.32 Total: -60.24 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.08 Total: 20.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.21 -8.09 -43.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.253 kcal (2) G-P(sol) polarization free energy of solvation -35.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds