Wall clock time and date at job start Fri Apr 10 2020 20:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46985 * 2 1 4 4 C 1.52997 * 109.47379 * 120.00196 * 2 1 3 5 5 N 1.46508 * 109.47149 * 64.99921 * 4 2 1 6 6 C 1.34774 * 120.00164 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99846 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00089 * 180.02562 * 6 5 4 9 9 H 1.08992 * 109.47068 * 59.99867 * 8 6 5 10 10 C 1.53004 * 109.46837 * 299.99910 * 8 6 5 11 11 N 1.46501 * 109.46950 * 180.02562 * 8 6 5 12 12 C 1.39988 * 119.99747 * 204.99966 * 11 8 6 13 13 C 1.40432 * 125.97374 * 0.02562 * 12 11 8 14 14 C 1.35251 * 107.86019 * 179.73886 * 13 12 11 15 15 N 1.34962 * 107.86128 * 0.42675 * 14 13 12 16 16 C 1.46500 * 125.97410 * 179.83595 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71196 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31219 * 125.97677 * 180.02562 * 12 11 8 26 26 H 1.08994 * 109.47078 * 299.99405 * 1 2 3 27 27 H 1.08991 * 109.47050 * 60.00073 * 1 2 3 28 28 H 1.08998 * 109.46684 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47129 * 240.00075 * 2 1 3 30 30 H 1.08998 * 109.46886 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47487 * 299.99884 * 3 2 1 32 32 H 1.09004 * 109.46671 * 60.00349 * 3 2 1 33 33 H 1.09002 * 109.47237 * 305.00097 * 4 2 1 34 34 H 1.08998 * 109.47232 * 184.99897 * 4 2 1 35 35 H 0.97001 * 119.99445 * 359.97438 * 5 4 2 36 36 H 1.09004 * 109.47220 * 60.00316 * 10 8 6 37 37 H 1.09007 * 109.47066 * 180.02562 * 10 8 6 38 38 H 1.09002 * 109.47272 * 299.99829 * 10 8 6 39 39 H 0.96999 * 120.00325 * 25.00079 * 11 8 6 40 40 H 1.07998 * 126.07497 * 0.02562 * 13 12 11 41 41 H 1.08000 * 126.07179 * 180.26370 * 14 13 12 42 42 H 1.09004 * 109.47078 * 4.71958 * 16 15 14 43 43 H 1.08993 * 109.47364 * 244.71729 * 16 15 14 44 44 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 1.9957 -2.9682 2.1910 7 8 2.6249 -2.5510 3.1402 8 6 1.5975 -4.4203 2.1304 9 1 2.0328 -4.8796 1.2430 10 6 0.0727 -4.5287 2.0649 11 7 2.0848 -5.1106 3.3271 12 6 2.3185 -6.4904 3.2928 13 6 2.1299 -7.3318 2.1844 14 6 2.4708 -8.5874 2.5538 15 7 2.8518 -8.5490 3.8479 16 6 3.2977 -9.6924 4.6480 17 6 4.6566 -9.3990 5.2299 18 1 5.1395 -8.4550 5.0246 19 6 5.2833 -10.3355 6.0242 20 7 4.6929 -11.4829 6.2786 21 14 6.9673 -9.9716 6.7461 22 1 8.0194 -10.4370 5.8070 23 1 7.1079 -8.5091 6.9616 24 1 7.1134 -10.6794 8.0433 25 7 2.7523 -7.2238 4.2907 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6055 -0.2618 2.1370 34 1 3.1264 -0.6444 1.2951 35 1 1.1483 -2.4662 0.4318 36 1 -0.2902 -4.0150 1.1747 37 1 -0.2153 -5.5791 2.0215 38 1 -0.3626 -4.0694 2.9524 39 1 2.2454 -4.6117 4.1433 40 1 1.7796 -7.0291 1.2086 41 1 2.4408 -9.4653 1.9256 42 1 3.3572 -10.5777 4.0149 43 1 2.5874 -9.8700 5.4554 44 1 3.8183 -11.6718 5.9040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:26 Heat of formation + Delta-G solvation = 2.515654 kcal Electronic energy + Delta-G solvation = -23012.033202 eV Core-core repulsion = 19578.541690 eV Total energy + Delta-G solvation = -3433.491512 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90690 -41.03389 -37.87670 -36.94032 -35.77540 -34.45075 -33.03632 -31.29574 -30.25880 -28.02984 -27.93641 -27.40273 -25.22965 -24.49321 -22.23283 -21.64480 -21.29339 -20.58466 -19.21636 -18.56893 -17.90408 -17.29946 -16.71995 -16.41883 -16.03601 -15.75662 -15.69619 -15.51158 -15.05339 -14.80976 -14.40023 -14.27062 -14.03237 -13.73673 -13.69038 -13.57002 -13.29722 -13.19439 -13.12746 -12.90172 -12.67008 -12.53483 -12.03105 -12.00927 -11.85208 -11.63221 -11.55625 -11.23783 -10.95915 -10.79581 -10.67454 -10.16664 -9.56695 -8.86619 -8.52242 -6.54728 1.27048 1.47664 1.49250 1.54806 1.56311 1.76842 2.09652 2.24306 2.46458 2.75373 3.00613 3.63210 3.79729 3.93917 3.95558 4.06156 4.13427 4.18727 4.26086 4.58706 4.60899 4.67153 4.67960 4.77754 4.82068 4.84932 4.85858 4.88584 5.01182 5.01948 5.05268 5.24143 5.28477 5.31137 5.41904 5.46371 5.50085 5.64620 5.94035 6.21372 6.33831 6.49960 6.52063 6.68139 7.14019 7.19624 7.30569 8.58144 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.002601 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.591707 B =10761.754399 C =11498.043821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.147 4.147 4 C 0.121 3.879 5 N -0.706 5.706 6 C 0.510 3.490 7 O -0.581 6.581 8 C 0.152 3.848 9 H 0.122 0.878 10 C -0.156 4.156 11 N -0.713 5.713 12 C 0.314 3.686 13 C -0.316 4.316 14 C 0.063 3.937 15 N -0.357 5.357 16 C 0.262 3.738 17 C -0.618 4.618 18 H 0.038 0.962 19 C -0.021 4.021 20 N -0.923 5.923 21 Si 1.121 2.879 22 H -0.264 1.264 23 H -0.287 1.287 24 H -0.273 1.273 25 N -0.396 5.396 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.419 0.581 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.397 0.603 40 H 0.178 0.822 41 H 0.199 0.801 42 H 0.054 0.946 43 H 0.009 0.991 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 21.325 -20.050 31.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.003 4.003 5 N -0.359 5.359 6 C 0.296 3.704 7 O -0.460 6.460 8 C 0.042 3.958 9 H 0.140 0.860 10 C -0.215 4.215 11 N -0.355 5.355 12 C 0.057 3.943 13 C -0.348 4.348 14 C -0.086 4.086 15 N -0.137 5.137 16 C 0.142 3.858 17 C -0.656 4.656 18 H 0.057 0.943 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.942 3.058 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.198 1.198 25 N -0.229 5.229 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.257 0.743 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.233 0.767 40 H 0.196 0.804 41 H 0.216 0.784 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.594 20.860 -17.337 28.771 hybrid contribution -1.527 0.496 -1.200 2.005 sum -11.121 21.357 -18.537 30.388 Atomic orbital electron populations 1.21891 0.93816 1.02590 1.02404 1.21318 0.97043 0.96831 0.96585 1.21786 1.01191 0.94807 1.02707 1.21514 0.99458 0.79989 0.99307 1.45786 1.57316 1.09542 1.23294 1.20945 0.78395 0.88746 0.82304 1.90716 1.41605 1.78389 1.35322 1.20767 0.96989 0.88283 0.89711 0.86020 1.22245 0.91576 1.04097 1.03555 1.43357 1.76340 1.01462 1.14383 1.19500 0.95723 0.86220 0.92892 1.21179 1.21669 0.91077 1.00918 1.23116 0.98249 1.01075 0.86144 1.48437 1.50136 1.05617 1.09509 1.19274 0.94653 0.81407 0.90443 1.22311 1.03453 1.04580 1.35300 0.94345 1.27257 1.08024 0.92236 0.94519 1.70913 1.16823 1.24035 1.44186 0.82859 0.70669 0.75460 0.76793 1.18948 1.21248 1.19828 1.77380 1.31990 0.89509 1.24010 0.93141 0.91229 0.91740 0.89182 0.92645 0.90889 0.92697 0.92601 0.92840 0.74298 0.87629 0.91001 0.93088 0.76742 0.80436 0.78373 0.92864 0.97349 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.07 71.98 0.65 -0.26 16 2 C -0.10 -0.76 2.96 -10.79 -0.03 -0.80 16 3 C -0.15 -1.13 9.19 71.98 0.66 -0.47 16 4 C 0.12 1.72 5.07 86.38 0.44 2.16 16 5 N -0.71 -9.79 5.18 -463.05 -2.40 -12.19 16 6 C 0.51 11.74 7.22 87.66 0.63 12.37 16 7 O -0.58 -19.54 15.84 -3.04 -0.05 -19.59 16 8 C 0.15 3.26 2.98 44.25 0.13 3.39 16 9 H 0.12 2.14 7.14 -2.39 -0.02 2.12 16 10 C -0.16 -2.40 9.40 71.98 0.68 -1.72 16 11 N -0.71 -23.64 5.16 -326.97 -1.69 -25.33 16 12 C 0.31 12.47 8.14 133.39 1.09 13.56 16 13 C -0.32 -10.37 9.92 22.12 0.22 -10.15 16 14 C 0.06 2.33 11.44 83.52 0.96 3.28 16 15 N -0.36 -17.26 3.67 -351.83 -1.29 -18.55 16 16 C 0.26 14.08 5.57 85.64 0.48 14.55 16 17 C -0.62 -37.08 9.24 25.60 0.24 -36.85 16 18 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 19 C -0.02 -1.22 5.46 84.65 0.46 -0.76 16 20 N -0.92 -55.64 13.65 21.45 0.29 -55.35 16 21 Si 1.12 52.40 29.90 68.60 2.05 54.45 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 N -0.40 -19.91 12.42 -54.54 -0.68 -20.58 16 26 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.06 0.29 7.18 -2.39 -0.02 0.27 16 29 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.42 2.72 7.07 -92.71 -0.66 2.07 16 36 H 0.11 0.72 7.56 -2.39 -0.02 0.70 16 37 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.40 14.81 7.92 -92.71 -0.73 14.07 16 40 H 0.18 4.02 7.45 -2.91 -0.02 4.00 16 41 H 0.20 5.56 8.06 -2.91 -0.02 5.54 16 42 H 0.05 2.70 7.94 -2.39 -0.02 2.68 16 43 H 0.01 0.49 8.00 -2.39 -0.02 0.47 16 44 H 0.26 15.52 7.22 -92.71 -0.67 14.85 16 Total: -1.00 -80.59 367.56 2.55 -78.04 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.29 Total: 20.79 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 6.60 Total: -1.69 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -5.76 Total: -132.00 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.05 Total: 54.45 kcal Total: -80.59 2.55 -78.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.557 kcal (2) G-P(sol) polarization free energy of solvation -80.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds