Wall clock time and date at job start Fri Apr 10 2020 20:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46627 * 2 1 4 4 C 1.53001 * 109.46873 * 240.00523 * 2 1 3 5 5 C 1.53000 * 109.47210 * 62.32349 * 4 2 1 6 6 C 1.53002 * 109.47124 * 67.31185 * 5 4 2 7 7 C 1.53000 * 109.47124 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46917 * 299.99635 * 7 6 5 9 9 C 1.52999 * 109.47253 * 60.00098 * 8 7 6 10 10 C 1.52995 * 109.47064 * 187.30556 * 5 4 2 11 11 C 1.50696 * 109.47012 * 120.00241 * 2 1 3 12 12 O 1.20825 * 119.99564 * 121.25714 * 11 2 1 13 13 O 1.34229 * 120.00003 * 301.25092 * 11 2 1 14 14 C 1.45202 * 116.99839 * 185.09088 * 13 11 2 15 15 C 1.53000 * 109.47212 * 184.78800 * 14 13 11 16 16 C 1.50703 * 115.55050 * 65.69268 * 15 14 13 17 17 H 1.07997 * 119.99663 * 270.46120 * 16 15 14 18 18 C 1.37875 * 119.99583 * 90.46289 * 16 15 14 19 19 N 1.31515 * 119.99783 * 181.39466 * 18 16 15 20 20 Si 1.86798 * 120.00289 * 1.38575 * 18 16 15 21 21 H 1.48500 * 109.46878 * 92.89857 * 20 18 16 22 22 H 1.48504 * 109.47091 * 212.89945 * 20 18 16 23 23 H 1.48497 * 109.47360 * 332.89781 * 20 18 16 24 24 C 1.53005 * 117.49579 * 280.02394 * 15 14 13 25 25 C 1.52998 * 117.49972 * 211.36484 * 15 14 13 26 26 H 1.08999 * 109.46816 * 294.36623 * 1 2 3 27 27 H 1.09000 * 109.47076 * 54.36979 * 1 2 3 28 28 H 1.09001 * 109.46559 * 174.36806 * 1 2 3 29 29 H 1.08998 * 109.46834 * 302.31992 * 4 2 1 30 30 H 1.08999 * 109.46756 * 182.32285 * 4 2 1 31 31 H 1.08993 * 109.46981 * 307.31081 * 5 4 2 32 32 H 1.09000 * 109.47602 * 59.99486 * 6 5 4 33 33 H 1.09011 * 109.46934 * 299.99735 * 6 5 4 34 34 H 1.09005 * 109.46840 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47415 * 59.99840 * 7 6 5 36 36 H 1.09001 * 109.46956 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.46863 * 299.99935 * 8 7 6 38 38 H 1.08993 * 109.46994 * 59.99526 * 9 8 7 39 39 H 1.08994 * 109.47288 * 180.02562 * 9 8 7 40 40 H 1.09007 * 109.47635 * 300.00301 * 10 5 4 41 41 H 1.09003 * 109.47265 * 59.99741 * 10 5 4 42 42 H 1.09001 * 109.47019 * 304.78568 * 14 13 11 43 43 H 1.08996 * 109.47123 * 64.78691 * 14 13 11 44 44 H 0.97001 * 120.00342 * 180.02562 * 19 18 16 45 45 H 1.08999 * 117.50150 * 0.02562 * 24 15 14 46 46 H 1.09007 * 117.49597 * 145.01808 * 24 15 14 47 47 H 1.08994 * 117.50252 * 214.97595 * 25 15 14 48 48 H 1.09003 * 117.50025 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5783 0.0332 -2.4978 6 6 2.2795 1.3915 -2.5614 7 6 1.8183 2.1456 -3.8103 8 6 2.1702 1.3312 -5.0568 9 6 1.4690 -0.0272 -4.9932 10 6 1.9297 -0.7809 -3.7446 11 6 2.0323 -0.7104 1.2304 12 8 2.7456 -1.6794 1.1196 13 8 1.6875 -0.2667 2.4494 14 6 2.2978 -0.9284 3.5887 15 6 1.6989 -0.3726 4.8823 16 6 0.2365 -0.6649 5.0996 17 1 -0.5119 0.0187 4.7268 18 6 -0.1457 -1.8049 5.7743 19 7 -1.4224 -2.0740 5.9400 20 14 1.1495 -2.9673 6.4529 21 1 1.4485 -2.6069 7.8621 22 1 0.6421 -4.3617 6.3955 23 1 2.3877 -2.8573 5.6405 24 6 2.2345 0.9677 5.3900 25 6 2.6015 -0.3285 6.1169 26 1 -0.3633 0.4240 0.9361 27 1 -0.3633 0.5987 -0.8353 28 1 -0.3632 -1.0227 -0.1009 29 1 1.6430 -1.7361 -1.2704 30 1 3.1292 -0.7574 -1.2287 31 1 0.4996 0.1829 -2.4536 32 1 3.3583 1.2419 -2.6055 33 1 2.0292 1.9716 -1.6731 34 1 2.3176 3.1135 -3.8553 35 1 0.7395 2.2953 -3.7666 36 1 1.8420 1.8686 -5.9465 37 1 3.2490 1.1815 -5.1004 38 1 0.3903 0.1225 -4.9495 39 1 1.7200 -0.6076 -5.8810 40 1 3.0085 -0.9307 -3.7888 41 1 1.4302 -1.7487 -3.6993 42 1 2.1074 -2.0001 3.5314 43 1 3.3729 -0.7493 3.5798 44 1 -1.6914 -2.8758 6.4151 45 1 3.0132 1.4537 4.8022 46 1 1.5292 1.6379 5.8815 47 1 2.1377 -0.5104 7.0862 48 1 3.6219 -0.6958 6.0077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327424708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:09 Heat of formation + Delta-G solvation = -103.177787 kcal Electronic energy + Delta-G solvation = -24330.763055 eV Core-core repulsion = 20963.935923 eV Total energy + Delta-G solvation = -3366.827131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.198 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.17710 -38.94090 -37.18695 -35.51315 -34.83196 -32.10272 -31.10651 -30.76237 -27.30439 -26.34736 -25.40308 -23.86541 -22.78681 -21.78706 -21.25640 -19.91457 -19.33966 -19.12250 -17.13702 -16.65385 -15.94726 -15.76586 -15.32714 -14.99607 -14.67673 -14.34553 -14.22403 -13.93318 -13.64456 -13.28195 -12.89066 -12.64538 -12.49893 -12.39992 -12.33420 -12.04818 -11.85011 -11.79338 -11.30626 -11.28500 -11.17019 -11.01887 -10.95167 -10.83026 -10.52542 -10.49290 -10.23813 -10.20246 -10.07970 -10.01635 -9.86961 -9.53325 -9.03246 -8.59898 -8.56994 -6.12542 -4.15514 2.70344 3.20040 3.26741 3.37505 3.41620 4.39770 4.46451 4.49106 4.56504 4.79231 4.84823 4.92865 5.10088 5.10434 5.14566 5.19089 5.26680 5.34048 5.35532 5.38592 5.47066 5.51993 5.66612 5.68964 5.80280 5.83641 5.89863 5.91446 5.96077 5.96553 5.98844 5.99886 6.03929 6.09903 6.12459 6.15592 6.26077 6.30634 6.35695 6.39998 6.47896 6.65810 6.92203 7.06540 7.19136 7.68764 8.32758 8.49814 8.92237 9.49737 10.99244 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.003177 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.907078 B = 8811.911905 C = 9004.791378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.105 0.895 4 C -0.099 4.099 5 C -0.088 4.088 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.457 3.543 12 O -0.524 6.524 13 O -0.331 6.331 14 C 0.109 3.891 15 C -0.003 4.003 16 C -0.482 4.482 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.896 5.896 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.260 1.260 24 C -0.174 4.174 25 C -0.192 4.192 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.265 0.735 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 6.588 -18.870 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.123 0.877 4 C -0.137 4.137 5 C -0.107 4.107 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.152 4.152 11 C 0.300 3.700 12 O -0.414 6.414 13 O -0.246 6.246 14 C 0.035 3.965 15 C -0.004 4.004 16 C -0.519 4.519 17 H 0.100 0.900 18 C -0.127 4.127 19 N -0.533 5.533 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.185 1.185 24 C -0.211 4.211 25 C -0.229 4.229 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.013 6.152 -18.767 20.958 hybrid contribution 0.761 -0.902 0.582 1.316 sum 7.773 5.250 -18.185 20.462 Atomic orbital electron populations 1.21826 0.92000 1.02993 1.03572 1.21048 0.98536 1.00644 0.89933 0.87718 1.21536 1.01502 0.99220 0.91428 1.21236 1.00794 0.94789 0.93834 1.21674 1.00302 0.95828 0.97809 1.21533 1.01236 0.98261 0.94675 1.21539 1.00462 0.96017 0.97711 1.21519 1.00327 0.96067 0.97756 1.21564 1.01308 0.98413 0.93899 1.23710 0.77616 0.82716 0.85926 1.90599 1.36325 1.26701 1.87809 1.86531 1.64636 1.59136 1.14287 1.22957 0.93656 0.96914 0.82928 1.19335 0.95555 0.97150 0.88389 1.20224 0.87579 1.08001 1.36105 0.90049 1.25010 0.95140 0.97176 0.95341 1.69885 1.15016 1.26624 1.41746 0.86880 0.82680 0.79963 0.79884 1.20360 1.21991 1.18451 1.22856 1.02647 0.91288 1.04315 1.22982 0.98893 1.03202 0.97834 0.90447 0.91404 0.92066 0.91004 0.91183 0.90447 0.91986 0.91609 0.92216 0.91983 0.92388 0.92168 0.92022 0.92280 0.92017 0.91914 0.91552 0.93781 0.92512 0.90826 0.89147 0.88864 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.71 37.16 0.32 -1.57 16 2 C -0.08 -1.11 2.70 -91.77 -0.25 -1.36 16 3 H 0.10 1.23 6.55 -51.93 -0.34 0.89 16 4 C -0.10 -1.18 3.48 -26.73 -0.09 -1.27 16 5 C -0.09 -0.82 2.04 -90.62 -0.18 -1.00 16 6 C -0.12 -1.02 5.00 -26.73 -0.13 -1.15 16 7 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 8 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 9 C -0.12 -0.90 5.92 -26.76 -0.16 -1.06 16 10 C -0.11 -0.98 5.20 -26.76 -0.14 -1.12 16 11 C 0.46 8.48 7.26 36.00 0.26 8.74 16 12 O -0.52 -10.91 15.62 -18.75 -0.29 -11.20 16 13 O -0.33 -6.99 9.92 -39.25 -0.39 -7.38 16 14 C 0.11 2.44 5.09 37.16 0.19 2.63 16 15 C 0.00 -0.08 1.07 -155.66 -0.17 -0.24 16 16 C -0.48 -13.44 9.40 -34.44 -0.32 -13.77 16 17 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 20 Si 0.88 21.75 24.73 -169.99 -4.20 17.54 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.16 5.99 56.52 0.34 -5.82 16 24 C -0.17 -3.53 9.96 -26.69 -0.27 -3.79 16 25 C -0.19 -4.06 7.22 -26.69 -0.19 -4.25 16 26 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 27 H 0.07 0.68 6.62 -51.93 -0.34 0.34 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.87 8.02 -51.93 -0.42 0.46 16 31 H 0.08 0.71 6.27 -51.93 -0.33 0.38 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.57 6.60 -51.92 -0.34 0.23 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.60 7.34 -51.93 -0.38 1.21 16 43 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 47 H 0.09 2.04 6.72 -51.93 -0.35 1.69 16 48 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -30.82 369.30 -8.96 -39.78 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.87 Total: 1.28 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -1.55 Total: -19.23 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.68 Total: -18.58 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.20 Total: 17.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.82 -8.96 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327424708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.396 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds