Wall clock time and date at job start Fri Apr 10 2020 20:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.01712 * 2 1 4 4 C 1.53873 * 110.03351 * 121.38831 * 2 1 3 5 5 C 1.54270 * 106.59673 * 119.28602 * 4 2 1 6 6 C 1.54888 * 104.19438 * 336.39102 * 5 4 2 7 7 H 1.09008 * 110.75803 * 279.44268 * 6 5 4 8 8 C 1.50704 * 110.75706 * 156.25957 * 6 5 4 9 9 O 1.21288 * 119.99490 * 264.68627 * 8 6 5 10 10 N 1.34774 * 120.00038 * 84.68256 * 8 6 5 11 11 C 1.46926 * 120.62730 * 174.88423 * 10 8 6 12 12 C 1.53198 * 108.77323 * 233.62843 * 11 10 8 13 13 C 1.53039 * 109.31028 * 305.36452 * 12 11 10 14 14 C 1.53043 * 109.53758 * 61.36483 * 13 12 11 15 15 H 1.09000 * 109.52364 * 58.60106 * 14 13 12 16 16 N 1.46500 * 109.49571 * 178.68162 * 14 13 12 17 17 C 1.36938 * 119.99857 * 274.83646 * 16 14 13 18 18 H 1.07999 * 120.00313 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99725 * 179.72447 * 17 16 14 20 20 N 1.31622 * 120.00261 * 180.27496 * 19 17 16 21 21 Si 1.86804 * 120.00092 * 0.27695 * 19 17 16 22 22 H 1.48504 * 109.46785 * 89.99964 * 21 19 17 23 23 H 1.48495 * 109.47217 * 209.99595 * 21 19 17 24 24 H 1.48490 * 109.47189 * 330.00117 * 21 19 17 25 25 C 1.46921 * 120.63096 * 354.90236 * 10 8 6 26 26 C 1.54262 * 110.03339 * 238.55958 * 2 1 3 27 27 H 1.09005 * 109.47288 * 300.06085 * 1 2 3 28 28 H 1.08998 * 109.47399 * 60.06185 * 1 2 3 29 29 H 1.09005 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47527 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47176 * 299.93941 * 3 2 1 32 32 H 1.09000 * 109.47175 * 59.93664 * 3 2 1 33 33 H 1.09004 * 110.03622 * 0.02562 * 4 2 1 34 34 H 1.08997 * 110.03698 * 238.56734 * 4 2 1 35 35 H 1.09003 * 110.48765 * 217.71666 * 5 4 2 36 36 H 1.09001 * 110.60007 * 95.12077 * 5 4 2 37 37 H 1.09001 * 109.58912 * 353.41307 * 11 10 8 38 38 H 1.08998 * 109.59000 * 113.84499 * 11 10 8 39 39 H 1.09002 * 109.49567 * 65.31296 * 12 11 10 40 40 H 1.08998 * 109.49534 * 185.41130 * 12 11 10 41 41 H 1.09000 * 109.46202 * 301.34316 * 13 12 11 42 42 H 1.09003 * 109.45750 * 181.38497 * 13 12 11 43 43 H 0.96994 * 120.00117 * 94.84276 * 16 14 13 44 44 H 0.96996 * 120.00718 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58971 * 6.57958 * 25 10 8 46 46 H 1.09008 * 109.58784 * 246.15504 * 25 10 8 47 47 H 1.09000 * 110.48964 * 145.64596 * 26 2 1 48 48 H 1.09003 * 110.48725 * 22.99826 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7529 1.2341 5 6 2.8875 -1.9403 0.7044 6 6 2.3281 -2.1904 -0.7181 7 1 1.4048 -2.7682 -0.6741 8 6 3.3504 -2.8862 -1.5794 9 8 4.0702 -2.2381 -2.3095 10 7 3.4649 -4.2284 -1.5383 11 6 4.3772 -4.9302 -2.4515 12 6 3.5922 -6.0153 -3.1953 13 6 2.8982 -6.9246 -2.1785 14 6 1.9135 -6.1018 -1.3445 15 1 1.1809 -5.6342 -2.0022 16 7 1.2269 -6.9789 -0.3928 17 6 0.1109 -7.6707 -0.7816 18 1 -0.2629 -7.5701 -1.7899 19 6 -0.5363 -8.5061 0.1184 20 7 -1.6058 -9.1753 -0.2568 21 14 0.1105 -8.6806 1.8622 22 1 -0.5284 -7.6602 2.7315 23 1 -0.2082 -10.0373 2.3749 24 1 1.5822 -8.4829 1.8663 25 6 2.6795 -5.0177 -0.5798 26 6 2.0584 -0.7560 -1.2365 27 1 -0.3634 0.5148 0.8895 28 1 -0.3634 0.5129 -0.8905 29 1 -0.3634 -1.0277 0.0005 30 1 3.1436 1.4273 0.0005 31 1 1.6962 1.9546 -0.8905 32 1 1.6944 1.9552 0.8894 33 1 1.2229 -1.1188 1.8328 34 1 2.6867 -0.0945 1.8325 35 1 2.7401 -2.8191 1.3322 36 1 3.9446 -1.6786 0.6579 37 1 4.7918 -4.2223 -3.1693 38 1 5.1841 -5.3895 -1.8805 39 1 2.8441 -5.5485 -3.8360 40 1 4.2761 -6.6061 -3.8045 41 1 3.6448 -7.3718 -1.5223 42 1 2.3589 -7.7123 -2.7046 43 1 1.5627 -7.0694 0.5126 44 1 -2.0579 -9.7593 0.3720 45 1 1.9739 -4.3677 -0.0625 46 1 3.3479 -5.4842 0.1439 47 1 2.9811 -0.3007 -1.5965 48 1 1.3061 -0.7705 -2.0251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000125708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:50 Heat of formation + Delta-G solvation = -47.108387 kcal Electronic energy + Delta-G solvation = -25084.432270 eV Core-core repulsion = 21752.329242 eV Total energy + Delta-G solvation = -3332.103029 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52024 -38.67556 -37.25206 -34.46478 -33.03910 -31.93897 -31.39086 -29.11875 -28.76040 -27.43195 -25.80134 -24.48906 -23.64863 -22.29963 -21.21238 -19.96872 -18.87391 -18.77448 -17.67887 -17.27822 -15.82939 -15.56434 -14.91375 -14.69570 -14.48741 -14.00026 -13.87726 -13.82327 -13.73418 -13.57509 -13.36173 -13.09140 -12.75167 -12.65882 -12.45413 -12.21222 -11.76150 -11.64658 -11.38998 -11.17255 -11.09959 -11.07166 -10.81141 -10.76158 -10.67295 -10.57384 -10.54702 -10.50372 -10.36549 -10.17068 -9.66065 -9.55859 -8.99688 -8.47149 -7.36820 -5.83795 -3.21141 2.70282 3.09028 3.31623 3.33679 3.40552 4.31590 4.39098 4.52021 4.54211 4.81125 5.03165 5.09212 5.12779 5.16707 5.21489 5.23096 5.30866 5.35129 5.40297 5.46689 5.49180 5.53006 5.53294 5.61782 5.64954 5.71031 5.73952 5.81973 5.83776 5.88258 5.95485 5.98081 6.01950 6.12184 6.15220 6.19142 6.24186 6.30349 6.32252 6.36491 6.66100 6.73215 6.88923 7.52116 7.91051 8.27920 8.34460 9.11682 9.83775 10.02261 11.34224 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.004678 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.493214 B = 5983.979558 C = 7256.700719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.110 4.110 6 C -0.118 4.118 7 H 0.102 0.898 8 C 0.526 3.474 9 O -0.551 6.551 10 N -0.604 5.604 11 C 0.112 3.888 12 C -0.132 4.132 13 C -0.137 4.137 14 C 0.171 3.829 15 H 0.060 0.940 16 N -0.746 5.746 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.096 3.904 26 C -0.096 4.096 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.694 16.758 0.999 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.195 4.195 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.139 4.139 7 H 0.121 0.879 8 C 0.314 3.686 9 O -0.429 6.429 10 N -0.337 5.337 11 C -0.010 4.010 12 C -0.171 4.171 13 C -0.178 4.178 14 C 0.061 3.939 15 H 0.078 0.922 16 N -0.388 5.388 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.188 4.188 20 N -0.579 5.579 21 Si 0.713 3.287 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.027 4.027 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.856 16.995 0.495 19.652 hybrid contribution 0.294 -0.572 1.299 1.450 sum 10.149 16.423 1.795 19.389 Atomic orbital electron populations 1.21940 0.94184 1.02134 1.01515 1.21180 0.95641 0.95301 0.94953 1.21899 1.00859 0.95248 1.01483 1.22277 0.99461 0.96396 0.97017 1.22309 0.99875 0.98837 0.93746 1.22333 0.98370 0.97529 0.95657 0.87948 1.20512 0.83934 0.81613 0.82514 1.90636 1.45521 1.64817 1.41948 1.48085 1.42777 1.05808 1.37034 1.21607 0.91777 0.94790 0.92871 1.21927 0.99668 0.97059 0.98462 1.22235 0.98930 0.98865 0.97736 1.20477 0.92550 0.89509 0.91387 0.92190 1.42683 1.32164 1.53404 1.10577 1.19028 1.00840 1.18875 0.98787 0.89154 1.24664 0.97362 0.99031 0.97773 1.69694 1.20926 1.32228 1.35050 0.86578 0.78402 0.77420 0.86269 1.20990 1.21706 1.20311 1.22198 0.94678 0.94447 0.91400 1.22387 1.01910 0.92471 0.96637 0.92756 0.92710 0.92205 0.92587 0.92725 0.92810 0.91235 0.91526 0.90898 0.91274 0.89488 0.91873 0.91778 0.91276 0.92617 0.91103 0.80617 0.92960 0.89349 0.91551 0.89916 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.14 37.16 0.30 -0.98 16 2 C -0.07 -0.67 0.94 -153.39 -0.14 -0.82 16 3 C -0.14 -1.17 8.16 37.16 0.30 -0.87 16 4 C -0.11 -1.07 6.11 -25.61 -0.16 -1.23 16 5 C -0.11 -1.17 6.09 -25.07 -0.15 -1.32 16 6 C -0.12 -1.44 2.24 -89.78 -0.20 -1.64 16 7 H 0.10 1.26 6.77 -51.92 -0.35 0.91 16 8 C 0.53 7.73 6.92 -10.98 -0.08 7.65 16 9 O -0.55 -9.54 15.17 5.55 0.08 -9.46 16 10 N -0.60 -8.58 2.97 -172.77 -0.51 -9.10 16 11 C 0.11 1.50 6.42 -3.71 -0.02 1.47 16 12 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 13 C -0.14 -2.25 5.47 -26.69 -0.15 -2.40 16 14 C 0.17 3.05 2.92 -67.81 -0.20 2.85 16 15 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 16 N -0.75 -16.37 4.93 -53.31 -0.26 -16.63 16 17 C -0.25 -6.59 10.41 -15.06 -0.16 -6.74 16 18 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 21 Si 0.88 21.14 27.74 -169.99 -4.72 16.43 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.19 6.51 56.52 0.37 -5.82 16 25 C 0.10 1.40 5.74 -3.72 -0.02 1.38 16 26 C -0.10 -1.10 5.15 -25.07 -0.13 -1.23 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.64 7.67 -51.93 -0.40 0.24 16 34 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 35 H 0.07 0.74 7.65 -51.93 -0.40 0.35 16 36 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.09 1.20 7.04 -51.93 -0.37 0.83 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.36 7.73 5.66 -40.82 -0.23 7.50 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.09 1.21 5.04 -51.93 -0.26 0.95 16 46 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 47 H 0.08 1.05 6.96 -51.93 -0.36 0.69 16 48 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -30.64 364.28 -8.87 -39.52 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -8.67 Total: 7.11 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.06 Total: -5.69 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.00 Total: -53.39 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.72 Total: 16.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.64 -8.87 -39.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000125708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.592 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds