Wall clock time and date at job start Fri Apr 10 2020 20:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34772 * 120.00378 * 2 1 4 4 O 1.21286 * 120.00477 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00017 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47086 * 179.97438 * 5 3 2 7 7 C 1.53778 * 113.61336 * 184.99962 * 6 5 3 8 8 C 1.53773 * 87.08429 * 219.93621 * 7 6 5 9 9 C 1.52997 * 113.61817 * 139.98076 * 8 7 6 10 10 C 1.53006 * 113.61373 * 270.80132 * 8 7 6 11 11 C 1.53775 * 113.68797 * 87.46458 * 6 5 3 12 12 C 1.46505 * 119.99934 * 179.97438 * 2 1 3 13 13 H 1.08993 * 110.64172 * 178.31887 * 12 2 1 14 14 C 1.55150 * 110.71722 * 54.97645 * 12 2 1 15 15 C 1.54913 * 101.58730 * 277.13930 * 14 12 2 16 16 N 1.47433 * 104.82712 * 322.99563 * 15 14 12 17 17 C 1.36936 * 125.64452 * 204.08975 * 16 15 14 18 18 H 1.08001 * 120.00019 * 180.02562 * 17 16 15 19 19 C 1.38819 * 120.00183 * 0.03765 * 17 16 15 20 20 N 1.31620 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99925 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47152 * 60.00770 * 21 19 17 23 23 H 1.48510 * 109.46889 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47464 * 299.99814 * 21 19 17 25 25 C 1.47013 * 108.70320 * 24.12355 * 16 15 14 26 26 H 1.09003 * 109.46539 * 89.99774 * 1 2 3 27 27 H 1.08992 * 109.47368 * 210.00018 * 1 2 3 28 28 H 1.09003 * 109.46828 * 330.00558 * 1 2 3 29 29 H 1.09001 * 109.46902 * 60.00262 * 5 3 2 30 30 H 1.08998 * 109.46657 * 300.00127 * 5 3 2 31 31 H 1.08998 * 112.84849 * 316.19273 * 6 5 3 32 32 H 1.09001 * 113.61374 * 105.38004 * 7 6 5 33 33 H 1.09003 * 113.61173 * 334.48828 * 7 6 5 34 34 H 1.09002 * 109.47153 * 59.99965 * 9 8 7 35 35 H 1.09001 * 109.46832 * 300.00156 * 9 8 7 36 36 H 1.09004 * 109.47261 * 180.02562 * 9 8 7 37 37 H 1.08995 * 109.46975 * 298.46814 * 10 8 7 38 38 H 1.09005 * 109.46841 * 58.46708 * 10 8 7 39 39 H 1.09002 * 109.47267 * 178.46664 * 10 8 7 40 40 H 1.08995 * 113.61753 * 25.44589 * 11 6 5 41 41 H 1.08997 * 113.61771 * 254.53397 * 11 6 5 42 42 H 1.08998 * 111.00564 * 35.21526 * 14 12 2 43 43 H 1.09003 * 111.00162 * 159.06574 * 14 12 2 44 44 H 1.08991 * 110.37288 * 204.15481 * 15 14 12 45 45 H 1.09003 * 110.46015 * 81.87311 * 15 14 12 46 46 H 0.96994 * 120.00389 * 179.97438 * 20 19 17 47 47 H 1.09006 * 109.88398 * 239.51847 * 25 16 15 48 48 H 1.09002 * 109.87929 * 118.36512 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3798 3.6352 0.0002 7 6 1.7132 5.0156 0.1225 8 6 2.7409 5.5158 -0.9062 9 6 2.1558 6.4842 -1.9361 10 6 4.0375 6.0297 -0.2770 11 6 2.8297 4.0642 -1.4063 12 6 2.1975 -1.2688 0.0006 13 1 3.2725 -1.0918 -0.0294 14 6 1.7506 -2.1611 -1.1874 15 6 0.4717 -2.8226 -0.6159 16 7 0.7743 -3.0617 0.8071 17 6 0.1809 -4.0062 1.6013 18 1 0.4735 -4.1025 2.6365 19 6 -0.7966 -4.8402 1.0759 20 7 -1.1527 -4.7234 -0.1858 21 14 -1.6056 -6.1291 2.1592 22 1 -2.2794 -5.4627 3.3025 23 1 -2.6079 -6.8846 1.3654 24 1 -0.5724 -7.0652 2.6707 25 6 1.8181 -2.1177 1.2322 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 0.7585 2.5303 0.8892 30 1 0.7592 2.5298 -0.8908 31 1 3.2053 3.4858 0.6961 32 1 1.8251 5.4687 1.1075 33 1 0.6856 5.0379 -0.2405 34 1 1.7547 7.3594 -1.4251 35 1 1.3576 5.9884 -2.4885 36 1 2.9383 6.7943 -2.6288 37 1 3.8162 6.8796 0.3685 38 1 4.4952 5.2351 0.3124 39 1 4.7250 6.3404 -1.0638 40 1 2.1075 3.8266 -2.1872 41 1 3.8431 3.7496 -1.6555 42 1 1.5193 -1.5567 -2.0646 43 1 2.5076 -2.9102 -1.4197 44 1 0.2723 -3.7654 -1.1250 45 1 -0.3812 -2.1511 -0.7146 46 1 -1.8354 -5.3063 -0.5531 47 1 2.6908 -2.6654 1.5880 48 1 1.4348 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033354821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:28 Heat of formation + Delta-G solvation = 5.923951 kcal Electronic energy + Delta-G solvation = -24623.033360 eV Core-core repulsion = 21293.229986 eV Total energy + Delta-G solvation = -3329.803374 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.37318 -39.28782 -37.31012 -34.34810 -32.58216 -31.83209 -29.36415 -28.31720 -27.68142 -27.52495 -25.97898 -25.80628 -24.26913 -21.78185 -20.19035 -19.95190 -18.55880 -18.32960 -17.01898 -16.83023 -16.00948 -15.48389 -15.03113 -14.74888 -14.53758 -14.31970 -13.82987 -13.70828 -13.44939 -12.99350 -12.89647 -12.54157 -12.39123 -12.20502 -12.01037 -11.99747 -11.92708 -11.74528 -11.56403 -11.49695 -11.07491 -10.89831 -10.86235 -10.79007 -10.63386 -10.27452 -10.16393 -10.13720 -10.07485 -9.86270 -9.55523 -9.29689 -8.66840 -8.19994 -6.86809 -5.68374 -3.10350 2.92423 3.34606 3.38786 3.43173 3.44039 4.31778 4.44898 4.46979 4.53477 4.63633 4.92859 5.02928 5.21874 5.37467 5.41178 5.41918 5.43879 5.47175 5.49998 5.53516 5.59633 5.62890 5.69559 5.71869 5.75045 5.78513 5.79128 5.84879 5.88852 5.96053 6.06147 6.07629 6.25632 6.32014 6.33947 6.39471 6.48719 6.57432 6.61964 6.73303 7.07877 7.45418 7.59709 7.79222 7.83672 8.32802 8.49994 9.18900 9.79397 10.44156 11.35011 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.038155 B = 0.002932 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.677223 B = 9546.874007 C = 9637.037415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.596 5.596 3 C 0.511 3.489 4 O -0.552 6.552 5 C -0.129 4.129 6 C -0.091 4.091 7 C -0.129 4.129 8 C -0.092 4.092 9 C -0.134 4.134 10 C -0.128 4.128 11 C -0.123 4.123 12 C 0.125 3.875 13 H 0.098 0.902 14 C -0.154 4.154 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.127 3.873 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.021 0.979 46 H 0.252 0.748 47 H 0.032 0.968 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.225 19.557 -2.805 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.328 5.328 3 C 0.299 3.701 4 O -0.430 6.430 5 C -0.169 4.169 6 C -0.110 4.110 7 C -0.166 4.166 8 C -0.092 4.092 9 C -0.192 4.192 10 C -0.185 4.185 11 C -0.160 4.160 12 C 0.021 3.979 13 H 0.116 0.884 14 C -0.194 4.194 15 C 0.020 3.980 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.000 4.000 26 H 0.071 0.929 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.123 0.877 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.684 19.372 -2.815 20.129 hybrid contribution -0.653 -0.746 0.558 1.137 sum 4.032 18.627 -2.257 19.191 Atomic orbital electron populations 1.22081 0.79284 1.04100 1.01833 1.47850 1.07258 1.05645 1.72035 1.20664 0.88051 0.85392 0.75951 1.90638 1.14058 1.87498 1.50837 1.21703 0.98976 0.92257 1.03974 1.22272 0.98030 0.92023 0.98690 1.23136 0.98393 0.96068 0.99049 1.21767 0.96018 0.94926 0.96450 1.21725 1.00459 0.98815 0.98174 1.21588 0.95692 1.00895 1.00354 1.23098 1.01995 0.94477 0.96464 1.22114 0.96461 0.82358 0.96928 0.88370 1.23336 1.01505 0.98243 0.96283 1.22118 0.90532 1.00653 0.84656 1.44539 1.42719 1.37688 1.07993 1.19030 1.14848 1.08446 0.92782 0.90594 1.24772 0.99402 0.99867 0.96510 1.69785 1.34098 1.41127 1.12075 0.86156 0.78879 0.81299 0.79167 1.21253 1.21595 1.21190 1.21637 0.92696 0.91419 0.94222 0.92882 0.88034 0.92213 0.89008 0.89139 0.88338 0.91558 0.90083 0.92789 0.92611 0.92808 0.92620 0.92151 0.92567 0.90412 0.91322 0.92150 0.91152 0.87732 0.96073 0.93686 0.95063 0.95622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 8.34 59.85 0.50 1.57 16 2 N -0.60 -9.96 2.82 -171.84 -0.49 -10.44 16 3 C 0.51 8.12 7.67 -10.98 -0.08 8.03 16 4 O -0.55 -10.40 15.13 5.55 0.08 -10.32 16 5 C -0.13 -1.50 4.09 -27.88 -0.11 -1.61 16 6 C -0.09 -1.01 2.80 -89.81 -0.25 -1.26 16 7 C -0.13 -1.14 6.79 -25.92 -0.18 -1.32 16 8 C -0.09 -0.81 1.39 -153.69 -0.21 -1.02 16 9 C -0.13 -1.03 9.19 37.16 0.34 -0.69 16 10 C -0.13 -1.08 9.07 37.16 0.34 -0.74 16 11 C -0.12 -1.30 6.76 -25.92 -0.18 -1.47 16 12 C 0.12 2.35 3.58 -66.10 -0.24 2.12 16 13 H 0.10 1.88 6.99 -51.93 -0.36 1.52 16 14 C -0.15 -2.98 6.53 -24.58 -0.16 -3.14 16 15 C 0.14 3.36 5.01 -2.52 -0.01 3.35 16 16 N -0.60 -14.95 2.97 -170.07 -0.50 -15.45 16 17 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.07 10.09 55.49 0.56 -25.51 16 21 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 2.70 6.24 -3.07 -0.02 2.68 16 26 H 0.05 0.76 7.99 -51.93 -0.41 0.35 16 27 H 0.10 1.93 5.19 -51.93 -0.27 1.66 16 28 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 29 H 0.09 0.95 7.40 -51.93 -0.38 0.57 16 30 H 0.09 0.93 7.82 -51.93 -0.41 0.52 16 31 H 0.10 1.26 7.18 -51.93 -0.37 0.88 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.08 0.65 8.06 -51.93 -0.42 0.24 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.42 7.94 -51.93 -0.41 0.01 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.56 7.34 -51.93 -0.38 0.18 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 41 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.10 2.79 5.87 -51.93 -0.30 2.48 16 45 H 0.02 0.50 5.54 -51.93 -0.29 0.21 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -29.83 363.97 -8.92 -38.75 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.51 Total: 0.91 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.52 Total: -0.08 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.43 Total: -51.41 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.83 -8.92 -38.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033354821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.670 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds