Wall clock time and date at job start Fri Apr 10 2020 20:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 119.99924 * 2 1 4 4 O 1.21278 * 120.00123 * 184.65272 * 3 2 1 5 5 C 1.50704 * 120.00239 * 4.65560 * 3 2 1 6 6 C 1.53000 * 115.54930 * 65.33443 * 5 3 2 7 7 C 1.53001 * 117.49470 * 279.66568 * 5 3 2 8 8 C 1.52996 * 117.50288 * 0.02562 * 7 5 3 9 9 C 1.53003 * 117.49678 * 145.02000 * 7 5 3 10 10 C 1.53000 * 117.49756 * 211.00843 * 5 3 2 11 11 C 1.52998 * 117.49747 * 214.97699 * 10 5 3 12 12 C 1.52991 * 117.50023 * 359.97246 * 10 5 3 13 13 C 1.46504 * 120.00063 * 179.97438 * 2 1 3 14 14 C 1.53496 * 114.20653 * 299.99981 * 13 2 1 15 15 N 1.47072 * 87.98488 * 87.51647 * 14 13 2 16 16 C 1.36935 * 136.05940 * 207.08067 * 15 14 13 17 17 H 1.07997 * 119.99626 * 355.46004 * 16 15 14 18 18 C 1.38804 * 120.00043 * 175.45916 * 16 15 14 19 19 N 1.31616 * 120.00179 * 179.73102 * 18 16 15 20 20 Si 1.86801 * 120.00127 * 359.73327 * 18 16 15 21 21 H 1.48502 * 109.47398 * 174.70797 * 20 18 16 22 22 H 1.48499 * 109.47149 * 294.70513 * 20 18 16 23 23 H 1.48495 * 109.47245 * 54.70619 * 20 18 16 24 24 C 1.47073 * 87.88305 * 27.34265 * 15 14 13 25 25 H 1.09005 * 109.46904 * 272.84926 * 1 2 3 26 26 H 1.09000 * 109.46985 * 32.84540 * 1 2 3 27 27 H 1.09000 * 109.47082 * 152.85253 * 1 2 3 28 28 H 1.08998 * 109.47153 * 64.47325 * 6 5 3 29 29 H 1.08996 * 109.46999 * 184.46987 * 6 5 3 30 30 H 1.08997 * 109.46964 * 304.46976 * 6 5 3 31 31 H 1.09001 * 109.47275 * 72.84194 * 8 7 5 32 32 H 1.08999 * 109.47512 * 192.85007 * 8 7 5 33 33 H 1.09001 * 109.47097 * 312.84706 * 8 7 5 34 34 H 1.09000 * 109.47044 * 51.81098 * 9 7 5 35 35 H 1.08999 * 109.47234 * 171.81692 * 9 7 5 36 36 H 1.09003 * 109.47011 * 291.81536 * 9 7 5 37 37 H 1.09004 * 109.47432 * 68.56442 * 11 10 5 38 38 H 1.08998 * 109.47574 * 188.57219 * 11 10 5 39 39 H 1.09011 * 109.47268 * 308.57025 * 11 10 5 40 40 H 1.09002 * 109.47154 * 62.13845 * 12 10 5 41 41 H 1.08997 * 109.47219 * 182.13819 * 12 10 5 42 42 H 1.09007 * 109.47461 * 302.14081 * 12 10 5 43 43 H 1.08998 * 113.27946 * 166.92991 * 13 2 1 44 44 H 1.09003 * 113.46924 * 332.73992 * 14 13 2 45 45 H 1.08994 * 113.46529 * 202.29895 * 14 13 2 46 46 H 0.97003 * 120.00132 * 5.05244 * 19 18 16 47 47 H 1.08992 * 113.46739 * 87.43800 * 24 15 14 48 48 H 1.08999 * 113.46575 * 217.87607 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3487 1.1690 -0.0852 5 6 1.3891 2.4702 0.1059 6 6 0.6509 2.7013 1.4260 7 6 0.7466 3.0211 -1.1687 8 6 0.9140 2.2068 -2.4531 9 6 -0.5846 3.7615 -1.0256 10 6 1.9943 3.6919 -0.5885 11 6 1.8144 5.0513 0.0901 12 6 3.3145 3.4974 -1.3367 13 6 2.1975 -1.2688 0.0006 14 6 1.9060 -2.1633 1.2134 15 7 0.7742 -2.7255 0.4612 16 6 -0.4281 -3.3020 0.7733 17 1 -0.6853 -3.4894 1.8053 18 6 -1.3162 -3.6452 -0.2367 19 7 -2.4695 -4.2041 0.0629 20 14 -0.8744 -3.3141 -2.0213 21 1 -1.9232 -3.8839 -2.9049 22 1 -0.7816 -1.8489 -2.2446 23 1 0.4326 -3.9460 -2.3332 24 6 1.5048 -2.4023 -0.7736 25 1 -0.3633 0.0511 1.0265 26 1 -0.3633 0.8634 -0.5574 27 1 -0.3633 -0.9145 -0.4689 28 1 1.3735 2.7701 2.2391 29 1 0.0817 3.6289 1.3664 30 1 -0.0283 1.8696 1.6129 31 1 0.2890 1.3152 -2.4020 32 1 0.6145 2.8120 -3.3087 33 1 1.9578 1.9129 -2.5636 34 1 -0.4900 4.5353 -0.2637 35 1 -0.8496 4.2200 -1.9783 36 1 -1.3628 3.0566 -0.7327 37 1 2.3981 5.0782 1.0103 38 1 2.1562 5.8400 -0.5801 39 1 0.7607 5.2043 0.3236 40 1 3.1705 2.7840 -2.1482 41 1 3.6440 4.4521 -1.7464 42 1 4.0696 3.1173 -0.6485 43 1 3.2576 -1.1543 -0.2259 44 1 1.6039 -1.6068 2.1006 45 1 2.6942 -2.8878 1.4177 46 1 -2.7309 -4.3094 0.9911 47 1 2.1872 -3.1899 -1.0930 48 1 0.8609 -2.0494 -1.5792 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044376421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:36 Heat of formation + Delta-G solvation = 67.043095 kcal Electronic energy + Delta-G solvation = -26369.724603 eV Core-core repulsion = 23042.571555 eV Total energy + Delta-G solvation = -3327.153049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05081 -39.19169 -37.30434 -34.23276 -32.37358 -31.10544 -30.60522 -29.07821 -28.13133 -26.42769 -26.11214 -25.56677 -25.26505 -23.36396 -21.34381 -19.15611 -18.08190 -17.85584 -17.42419 -16.44390 -16.10110 -15.66965 -15.05815 -14.85036 -14.29470 -14.07272 -13.80869 -13.74321 -13.46944 -13.18924 -12.91098 -12.82816 -12.45264 -12.35802 -12.19643 -12.06005 -11.98310 -11.87194 -11.81538 -11.65440 -11.53274 -11.32296 -11.24266 -10.91071 -10.60401 -10.51212 -10.40230 -9.75989 -9.44766 -9.27230 -9.14556 -9.09755 -8.93713 -8.09235 -7.19710 -6.35415 -3.28271 2.81421 3.23248 3.29455 3.37762 3.58033 3.60174 4.44879 4.50983 4.53160 4.57611 4.70757 4.93462 4.99219 5.03983 5.18630 5.36157 5.38728 5.48414 5.57224 5.63020 5.64377 5.68736 5.70728 5.73360 5.78849 5.82910 5.85877 5.90181 5.91086 5.96340 6.04836 6.11904 6.15098 6.17877 6.18738 6.19615 6.23019 6.32173 6.36904 6.45098 6.61156 6.68508 7.03192 7.07486 7.85001 8.18421 8.51908 8.92511 9.44080 10.30712 11.16204 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.005451 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.867196 B = 5135.669039 C = 5449.212809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.575 5.575 3 C 0.554 3.446 4 O -0.547 6.547 5 C -0.141 4.141 6 C -0.115 4.115 7 C -0.102 4.102 8 C -0.131 4.131 9 C -0.123 4.123 10 C -0.086 4.086 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.098 3.902 14 C 0.111 3.889 15 N -0.625 5.625 16 C -0.298 4.298 17 H 0.082 0.918 18 C -0.024 4.024 19 N -0.935 5.935 20 Si 1.068 2.932 21 H -0.296 1.296 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.086 3.914 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.261 0.739 47 H 0.055 0.945 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 17.937 -2.160 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.305 5.305 3 C 0.342 3.658 4 O -0.425 6.425 5 C -0.144 4.144 6 C -0.172 4.172 7 C -0.102 4.102 8 C -0.187 4.187 9 C -0.180 4.180 10 C -0.086 4.086 11 C -0.177 4.177 12 C -0.178 4.178 13 C -0.007 4.007 14 C -0.017 4.017 15 N -0.354 5.354 16 C -0.424 4.424 17 H 0.099 0.901 18 C -0.222 4.222 19 N -0.578 5.578 20 Si 0.902 3.098 21 H -0.223 1.223 22 H -0.219 1.219 23 H -0.217 1.217 24 C -0.040 4.040 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.660 17.583 -3.686 19.160 hybrid contribution 0.441 -0.187 1.751 1.816 sum 7.101 17.397 -1.935 18.890 Atomic orbital electron populations 1.22068 0.78489 1.03878 1.02014 1.47307 1.07443 1.04383 1.71358 1.19476 0.86940 0.83827 0.75545 1.90604 1.14010 1.87135 1.50756 1.21658 1.03642 0.93269 0.95863 1.21370 0.99666 1.02589 0.93610 1.21831 0.94571 1.00687 0.93126 1.21573 1.02766 0.99520 0.94878 1.21507 0.94481 0.99811 1.02162 1.21719 0.94585 0.92221 1.00079 1.21482 1.02077 0.93940 1.00167 1.21544 0.95174 1.00758 1.00286 1.22491 0.95806 0.83237 0.99184 1.22768 0.90466 0.93286 0.95180 1.46206 1.15152 1.72750 1.01273 1.20133 0.89393 1.37765 0.95116 0.90075 1.25605 0.94302 0.98383 1.03944 1.70906 1.21793 1.44467 1.20620 0.83786 0.74531 0.75272 0.76201 1.22335 1.21941 1.21724 1.23207 0.94262 0.94022 0.92529 0.92838 0.92118 0.88332 0.92109 0.91322 0.91216 0.91583 0.91825 0.91444 0.91420 0.91939 0.91750 0.92087 0.92094 0.91534 0.91906 0.93200 0.90266 0.87678 0.93434 0.93482 0.92866 0.92772 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 8.18 59.85 0.49 1.88 16 2 N -0.57 -10.18 3.12 -173.55 -0.54 -10.72 16 3 C 0.55 9.28 5.47 -10.98 -0.06 9.22 16 4 O -0.55 -10.26 13.64 5.56 0.08 -10.19 16 5 C -0.14 -1.91 1.43 -155.66 -0.22 -2.13 16 6 C -0.12 -1.38 8.58 37.16 0.32 -1.06 16 7 C -0.10 -1.21 1.73 -154.47 -0.27 -1.48 16 8 C -0.13 -1.65 8.48 37.16 0.32 -1.33 16 9 C -0.12 -1.20 8.56 37.16 0.32 -0.88 16 10 C -0.09 -1.02 2.70 -154.48 -0.42 -1.43 16 11 C -0.12 -1.12 8.63 37.16 0.32 -0.80 16 12 C -0.12 -1.53 8.16 37.15 0.30 -1.22 16 13 C 0.10 1.82 4.70 -67.67 -0.32 1.51 16 14 C 0.11 2.20 8.31 -8.50 -0.07 2.13 16 15 N -0.62 -14.68 2.40 -184.60 -0.44 -15.12 16 16 C -0.30 -8.17 10.63 -15.06 -0.16 -8.33 16 17 H 0.08 2.38 8.05 -52.49 -0.42 1.96 16 18 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 19 N -0.94 -28.61 13.70 55.49 0.76 -27.85 16 20 Si 1.07 25.96 23.96 -169.99 -4.07 21.89 16 21 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.29 -6.46 5.81 56.52 0.33 -6.13 16 23 H -0.29 -6.73 6.47 56.52 0.37 -6.36 16 24 C 0.09 1.79 5.00 -8.36 -0.04 1.75 16 25 H 0.05 0.96 6.99 -51.93 -0.36 0.60 16 26 H 0.06 0.95 4.85 -51.93 -0.25 0.69 16 27 H 0.10 2.10 3.23 -51.93 -0.17 1.93 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.67 5.26 -51.93 -0.27 0.40 16 30 H 0.07 0.89 5.88 -51.93 -0.31 0.58 16 31 H 0.07 0.92 6.81 -51.93 -0.35 0.56 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.93 5.04 -51.93 -0.26 0.66 16 34 H 0.07 0.58 4.38 -51.93 -0.23 0.35 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.07 0.55 4.46 -51.92 -0.23 0.32 16 40 H 0.06 0.84 5.16 -51.93 -0.27 0.57 16 41 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 42 H 0.08 1.15 6.64 -51.93 -0.34 0.81 16 43 H 0.11 1.86 7.26 -51.93 -0.38 1.49 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.26 7.92 8.73 -40.82 -0.36 7.56 16 47 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 48 H 0.05 1.16 3.43 -51.93 -0.18 0.98 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -30.74 339.57 -6.19 -36.93 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.50 Total: 2.89 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 0.41 Total: -2.95 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.22 Total: -53.69 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -4.07 Total: 21.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.74 -6.19 -36.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044376421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.972 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds