Wall clock time and date at job start Fri Apr 10 2020 20:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53009 * 115.54968 * 2 1 4 4 C 1.50702 * 109.46770 * 279.79320 * 3 2 1 5 5 O 1.21281 * 120.00006 * 351.80513 * 4 3 2 6 6 N 1.34774 * 119.99749 * 171.80758 * 4 3 2 7 7 C 1.46971 * 120.36473 * 355.85182 * 6 4 3 8 8 C 1.52333 * 109.10394 * 68.33960 * 7 6 4 9 9 C 1.53800 * 109.15852 * 72.70415 * 8 7 6 10 10 C 1.52442 * 109.40517 * 282.15811 * 9 8 7 11 11 C 1.53965 * 110.73053 * 113.73015 * 10 9 8 12 12 C 1.52876 * 109.72347 * 315.63331 * 11 10 9 13 13 H 1.08998 * 109.49819 * 47.09295 * 12 11 10 14 14 N 1.46503 * 109.47738 * 167.13052 * 12 11 10 15 15 C 1.36939 * 119.99509 * 205.19606 * 14 12 11 16 16 H 1.08001 * 120.00151 * 359.72003 * 15 14 12 17 17 C 1.38812 * 120.00129 * 179.72714 * 15 14 12 18 18 N 1.31629 * 119.99714 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00558 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46930 * 59.99582 * 19 17 15 21 21 H 1.48498 * 109.47508 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47040 * 300.00083 * 19 17 15 23 23 C 1.45334 * 120.36481 * 175.83222 * 6 4 3 24 24 C 1.52997 * 117.51883 * 145.69574 * 2 1 3 25 25 C 1.52997 * 117.50233 * 214.32734 * 2 1 3 26 26 H 1.08998 * 109.47401 * 64.94335 * 1 2 3 27 27 H 1.09000 * 109.47667 * 184.94516 * 1 2 3 28 28 H 1.09005 * 109.47287 * 304.94368 * 1 2 3 29 29 H 1.09003 * 109.46892 * 159.79463 * 3 2 1 30 30 H 1.08997 * 109.46912 * 39.79034 * 3 2 1 31 31 H 1.09002 * 109.53054 * 188.22642 * 7 6 4 32 32 H 1.09001 * 109.53127 * 308.37422 * 7 6 4 33 33 H 1.09007 * 109.51999 * 192.59981 * 8 7 6 34 34 H 1.08994 * 109.52655 * 312.72672 * 8 7 6 35 35 H 1.09004 * 109.48175 * 42.13808 * 9 8 7 36 36 H 1.09004 * 109.48542 * 162.16415 * 9 8 7 37 37 H 1.08997 * 109.22697 * 234.04974 * 10 9 8 38 38 H 1.08994 * 109.22750 * 353.44815 * 10 9 8 39 39 H 1.08995 * 109.42251 * 195.55426 * 11 10 9 40 40 H 1.08998 * 109.42358 * 75.71452 * 11 10 9 41 41 H 0.96996 * 120.00682 * 24.92055 * 14 12 11 42 42 H 0.97003 * 119.99667 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.67729 * 103.63647 * 23 6 4 44 44 H 1.08989 * 109.67818 * 343.09051 * 23 6 4 45 45 H 1.08999 * 117.50530 * 214.97242 * 24 2 1 46 46 H 1.09002 * 117.49972 * 0.02562 * 24 2 1 47 47 H 1.09001 * 117.49195 * 359.97438 * 25 2 1 48 48 H 1.08996 * 117.49893 * 144.99415 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 2.1884 1.9378 -1.4002 5 8 1.8450 1.2396 -2.3305 6 7 2.5688 3.2122 -1.6185 7 6 2.8992 4.0928 -0.4891 8 6 4.1845 3.6030 0.1655 9 6 5.3745 3.9288 -0.7528 10 6 5.4271 2.9170 -1.8918 11 6 5.1392 3.6001 -3.2413 12 6 3.9494 4.5490 -3.0958 13 1 4.0787 5.1603 -2.2027 14 7 3.8691 5.4159 -4.2740 15 6 3.2639 6.6410 -4.1826 16 1 2.8420 6.9661 -3.2431 17 6 3.1927 7.4649 -5.2975 18 7 3.7073 7.0688 -6.4424 19 14 2.3667 9.1357 -5.1731 20 1 3.0716 9.9622 -4.1606 21 1 2.4229 9.8152 -6.4923 22 1 0.9492 8.9581 -4.7672 23 6 2.6571 3.7307 -2.9733 24 6 2.2368 -1.1209 0.7647 25 6 2.2364 -1.1207 -0.7653 26 1 -0.3634 0.4352 -0.9309 27 1 -0.3634 -1.0238 0.0886 28 1 -0.3634 0.5886 0.8424 29 1 3.2167 1.2923 0.3550 30 1 1.6341 2.0488 0.6577 31 1 3.0394 5.1116 -0.8503 32 1 2.0877 4.0725 0.2383 33 1 4.3177 4.1025 1.1252 34 1 4.1269 2.5257 0.3204 35 1 5.2536 4.9316 -1.1626 36 1 6.3003 3.8795 -0.1795 37 1 6.4176 2.4632 -1.9234 38 1 4.6822 2.1407 -1.7171 39 1 4.9089 2.8418 -3.9895 40 1 6.0168 4.1645 -3.5564 41 1 4.2480 5.1240 -5.1178 42 1 3.6579 7.6447 -7.2214 43 1 1.7977 4.3690 -3.1788 44 1 2.6782 2.9032 -3.6823 45 1 3.1720 -0.8750 1.2678 46 1 1.6119 -1.8588 1.2677 47 1 1.6111 -1.8583 -1.2684 48 1 3.1712 -0.8746 -1.2688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088349421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:30 Heat of formation + Delta-G solvation = 2.237282 kcal Electronic energy + Delta-G solvation = -25584.953672 eV Core-core repulsion = 22254.990432 eV Total energy + Delta-G solvation = -3329.963240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47347 -38.36194 -36.94835 -34.89789 -33.72742 -32.33972 -30.00906 -29.75905 -28.32022 -26.78960 -25.96903 -23.79997 -22.52210 -22.44963 -21.53105 -20.00075 -18.75844 -18.54207 -17.20247 -16.65204 -16.06689 -15.66312 -15.37826 -14.78384 -14.47493 -14.21147 -13.99703 -13.75726 -13.58173 -13.27036 -13.05060 -12.80652 -12.57470 -12.34658 -12.30627 -11.98014 -11.68225 -11.52335 -11.45486 -11.34114 -11.01828 -10.84384 -10.72768 -10.69664 -10.45695 -10.30422 -10.28370 -10.19404 -9.82943 -9.76378 -9.61613 -9.32347 -8.94211 -8.14709 -6.99209 -5.79642 -3.09334 2.93236 3.26628 3.41729 3.46214 3.47334 3.81434 4.56153 4.57623 4.66993 4.68092 4.79791 4.90721 4.98982 5.00909 5.18684 5.34818 5.39069 5.42316 5.48468 5.54221 5.56238 5.59867 5.69409 5.74954 5.79125 5.81698 5.89296 5.91624 5.95216 5.97763 6.06857 6.08408 6.12298 6.13775 6.24076 6.32866 6.36375 6.47221 6.56479 6.68635 6.82733 6.84963 7.12944 7.64531 7.78428 8.38287 8.54176 9.49546 10.06630 10.41169 11.42592 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.004107 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.857779 B = 6815.781602 C = 7170.273874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.112 4.112 3 C -0.108 4.108 4 C 0.510 3.490 5 O -0.538 6.538 6 N -0.599 5.599 7 C 0.104 3.896 8 C -0.147 4.147 9 C -0.127 4.127 10 C -0.113 4.113 11 C -0.123 4.123 12 C 0.158 3.842 13 H 0.065 0.935 14 N -0.720 5.720 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.090 3.910 24 C -0.182 4.182 25 C -0.150 4.150 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.197 -12.361 17.404 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.113 4.113 3 C -0.148 4.148 4 C 0.298 3.702 5 O -0.415 6.415 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.185 4.185 9 C -0.164 4.164 10 C -0.151 4.151 11 C -0.161 4.161 12 C 0.048 3.952 13 H 0.082 0.918 14 N -0.361 5.361 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.035 4.035 24 C -0.219 4.219 25 C -0.187 4.187 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.462 -12.536 16.897 21.045 hybrid contribution -0.336 0.946 -0.295 1.047 sum -0.799 -11.590 16.602 20.263 Atomic orbital electron populations 1.21282 0.92035 1.01554 1.02061 1.21066 0.94784 0.89787 1.05635 1.21505 1.02250 0.95587 0.95456 1.20450 0.77224 0.81559 0.91007 1.90678 1.47353 1.58411 1.45024 1.47916 1.66338 1.11040 1.07958 1.21657 0.96121 0.95845 0.88350 1.22358 0.95463 1.01959 0.98747 1.21823 0.97150 1.01021 0.96397 1.21637 1.00477 0.98097 0.94903 1.22009 0.99185 0.98640 0.96311 1.20915 0.90975 0.90804 0.92532 0.91772 1.42409 1.69106 1.16354 1.08196 1.19152 1.29881 0.92753 0.95668 0.91300 1.24747 1.01375 0.98786 0.95718 1.69658 1.50153 1.37511 1.00453 0.86294 0.79291 0.84102 0.76632 1.21243 1.21676 1.21249 1.22550 1.00980 0.98560 0.81372 1.23168 1.02110 1.01282 0.95347 1.22825 1.02410 1.00538 0.92914 0.91695 0.92668 0.92600 0.88418 0.89052 0.88711 0.91665 0.91072 0.91076 0.90202 0.92539 0.93084 0.92343 0.92503 0.91791 0.78137 0.93381 0.91723 0.90397 0.89074 0.88980 0.89038 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.71 37.15 0.36 -0.83 16 2 C -0.11 -1.24 1.66 -154.51 -0.26 -1.49 16 3 C -0.11 -1.19 4.10 -27.88 -0.11 -1.30 16 4 C 0.51 7.65 6.19 -10.99 -0.07 7.58 16 5 O -0.54 -10.04 14.69 5.56 0.08 -9.96 16 6 N -0.60 -8.95 1.68 -174.36 -0.29 -9.25 16 7 C 0.10 1.23 5.04 -4.13 -0.02 1.21 16 8 C -0.15 -1.48 5.43 -26.66 -0.14 -1.62 16 9 C -0.13 -1.52 5.49 -26.60 -0.15 -1.67 16 10 C -0.11 -1.55 5.40 -26.51 -0.14 -1.69 16 11 C -0.12 -2.09 5.22 -26.29 -0.14 -2.23 16 12 C 0.16 3.02 2.29 -67.76 -0.16 2.87 16 13 H 0.06 1.19 3.29 -51.93 -0.17 1.02 16 14 N -0.72 -17.60 5.12 -53.26 -0.27 -17.87 16 15 C -0.24 -6.54 9.89 -15.06 -0.15 -6.69 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 19 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.09 1.70 5.58 -4.44 -0.02 1.67 16 24 C -0.18 -1.67 9.87 -26.73 -0.26 -1.93 16 25 C -0.15 -1.72 8.86 -26.73 -0.24 -1.96 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.94 5.45 -51.93 -0.28 0.66 16 30 H 0.09 0.86 7.25 -51.93 -0.38 0.48 16 31 H 0.09 1.26 6.07 -51.93 -0.31 0.94 16 32 H 0.07 0.64 7.33 -51.93 -0.38 0.26 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.68 4.20 -51.93 -0.22 0.46 16 35 H 0.08 1.11 5.47 -51.93 -0.28 0.82 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.83 5.38 -51.93 -0.28 0.55 16 39 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 44 H 0.08 1.61 6.84 -51.94 -0.36 1.25 16 45 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -30.67 356.29 -9.01 -39.68 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.00 Total: 10.57 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.60 Total: -8.46 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.16 Total: -54.19 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.67 -9.01 -39.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088349421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.919 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds