Wall clock time and date at job start Fri Apr 10 2020 20:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99980 * 2 1 4 4 C 1.53000 * 109.47059 * 125.00335 * 3 2 1 5 5 C 1.50700 * 109.47059 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99742 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99694 * 179.72480 * 5 4 3 8 8 C 1.46501 * 119.99585 * 180.27804 * 7 5 4 9 9 C 1.53005 * 109.47092 * 179.97438 * 8 7 5 10 10 H 1.09011 * 109.58187 * 60.07878 * 9 8 7 11 11 C 1.53185 * 109.58862 * 180.36110 * 9 8 7 12 12 C 1.53071 * 109.29756 * 174.27991 * 11 9 8 13 13 C 1.53039 * 109.66137 * 298.85178 * 12 11 9 14 14 C 1.53006 * 109.49392 * 301.34396 * 13 12 11 15 15 C 1.53001 * 109.52708 * 181.26503 * 13 12 11 16 16 C 1.53193 * 109.31447 * 61.29555 * 13 12 11 17 17 N 1.46918 * 109.58754 * 299.79863 * 9 8 7 18 18 C 1.36941 * 120.63037 * 6.62191 * 17 9 8 19 19 H 1.07997 * 120.00032 * 328.93533 * 18 17 9 20 20 C 1.38814 * 119.99771 * 148.93697 * 18 17 9 21 21 N 1.31619 * 120.00140 * 346.00394 * 20 18 17 22 22 Si 1.86801 * 119.99787 * 166.00810 * 20 18 17 23 23 H 1.48502 * 109.47140 * 89.99836 * 22 20 18 24 24 H 1.48493 * 109.47275 * 209.99773 * 22 20 18 25 25 H 1.48498 * 109.47341 * 329.99844 * 22 20 18 26 26 H 1.08007 * 120.00093 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00400 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00029 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47187 * 5.00068 * 3 2 1 30 30 H 1.09002 * 109.47164 * 245.00187 * 3 2 1 31 31 H 1.09000 * 109.47340 * 59.99826 * 4 3 2 32 32 H 1.09002 * 109.47012 * 299.99945 * 4 3 2 33 33 H 0.96996 * 120.00355 * 0.27426 * 7 5 4 34 34 H 1.09002 * 109.47330 * 299.99451 * 8 7 5 35 35 H 1.09005 * 109.47452 * 59.99761 * 8 7 5 36 36 H 1.09006 * 109.49779 * 294.37827 * 11 9 8 37 37 H 1.09003 * 109.49868 * 54.47257 * 11 9 8 38 38 H 1.08996 * 109.45607 * 178.75587 * 12 11 9 39 39 H 1.09012 * 109.34400 * 58.87246 * 12 11 9 40 40 H 1.09002 * 109.47047 * 179.83212 * 14 13 12 41 41 H 1.08998 * 109.47215 * 299.83790 * 14 13 12 42 42 H 1.09007 * 109.46636 * 59.83778 * 14 13 12 43 43 H 1.08999 * 109.46889 * 300.14252 * 15 13 12 44 44 H 1.08999 * 109.47183 * 60.14203 * 15 13 12 45 45 H 1.08998 * 109.47105 * 180.14544 * 15 13 12 46 46 H 1.08999 * 109.58882 * 185.58296 * 16 13 12 47 47 H 1.08997 * 109.70289 * 65.22314 * 16 13 12 48 48 H 0.96997 * 119.99563 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7881 2.6384 1.1819 6 8 3.5688 3.4651 0.3221 7 7 4.7008 2.8895 2.1413 8 6 5.4284 4.1610 2.1452 9 6 6.3957 4.1915 3.3303 10 1 7.1059 3.3691 3.2435 11 6 7.1516 5.5238 3.3421 12 6 8.0104 5.6070 4.6065 13 6 7.1120 5.5467 5.8440 14 6 6.1079 6.7005 5.8028 15 6 7.9705 5.6618 7.1053 16 6 6.3583 4.2131 5.8585 17 7 5.6419 4.0610 4.5847 18 6 4.2973 3.8021 4.5670 19 1 3.6878 4.1669 3.7535 20 6 3.7178 3.0708 5.5947 21 7 4.4772 2.3960 6.4316 22 14 1.8602 3.0442 5.7898 23 1 1.2960 1.9175 5.0041 24 1 1.5155 2.8694 7.2236 25 1 1.2923 4.3247 5.2969 26 1 -0.5401 -0.9354 0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 3.7400 0.5065 1.0920 32 1 2.4773 1.2355 2.1130 33 1 4.8758 2.2285 2.8292 34 1 5.9889 4.2618 1.2157 35 1 4.7201 4.9848 2.2334 36 1 7.7901 5.5877 2.4610 37 1 6.4375 6.3474 3.3349 38 1 8.5664 6.5445 4.6067 39 1 8.7092 4.7705 4.6240 40 1 5.4664 6.6554 6.6828 41 1 6.6447 7.6491 5.7925 42 1 5.4974 6.6187 4.9035 43 1 8.6864 4.8403 7.1336 44 1 8.5066 6.6107 7.0945 45 1 7.3301 5.6161 7.9861 46 1 5.6445 4.2057 6.6823 47 1 7.0654 3.3926 5.9803 48 1 4.0721 1.8847 7.1495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098949607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:59 Heat of formation + Delta-G solvation = -18.472904 kcal Electronic energy + Delta-G solvation = -25339.643535 eV Core-core repulsion = 22008.782234 eV Total energy + Delta-G solvation = -3330.861301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.34432 -38.42450 -35.45606 -34.83302 -33.17598 -32.15302 -30.48458 -30.00105 -27.43575 -26.60995 -25.49276 -24.47623 -22.78639 -22.18545 -20.09757 -19.70309 -19.47243 -17.90724 -16.79753 -16.00559 -15.66484 -15.43143 -15.10326 -14.47726 -14.15574 -13.92673 -13.81946 -13.41593 -13.34838 -13.15556 -12.79817 -12.60995 -12.23697 -12.15252 -11.83315 -11.62119 -11.37979 -11.28240 -11.14874 -10.94572 -10.89680 -10.81500 -10.75342 -10.59218 -10.42297 -10.11748 -10.07997 -9.80023 -9.48397 -9.40400 -9.30180 -9.07038 -8.57501 -8.17289 -6.64876 -5.85238 -3.30876 2.31912 3.26730 3.31452 3.39672 3.43570 3.95298 4.41841 4.98468 5.12472 5.19746 5.29215 5.37256 5.44792 5.46039 5.50583 5.57916 5.63413 5.76455 5.84365 5.90206 5.94657 6.03268 6.12413 6.16832 6.18493 6.24614 6.33594 6.34392 6.37996 6.46096 6.47751 6.48468 6.53347 6.65713 6.67013 6.83674 6.90599 6.94675 7.02884 7.12142 7.24390 7.37932 7.65626 7.78775 8.32469 8.40187 8.93686 9.15581 9.77181 10.35436 11.21457 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.005094 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.677401 B = 5495.045449 C = 6653.901933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.077 4.077 4 C -0.137 4.137 5 C 0.506 3.494 6 O -0.569 6.569 7 N -0.694 5.694 8 C 0.135 3.865 9 C 0.160 3.840 10 H 0.030 0.970 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.095 4.095 14 C -0.124 4.124 15 C -0.133 4.133 16 C 0.188 3.812 17 N -0.585 5.585 18 C -0.248 4.248 19 H 0.069 0.931 20 C 0.009 3.991 21 N -0.899 5.899 22 Si 0.890 3.110 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.415 0.585 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.041 0.959 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.017 0.983 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 -0.414 -5.441 5.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.115 4.115 4 C -0.177 4.177 5 C 0.293 3.707 6 O -0.450 6.450 7 N -0.345 5.345 8 C 0.010 3.990 9 C 0.053 3.947 10 H 0.048 0.952 11 C -0.170 4.170 12 C -0.133 4.133 13 C -0.097 4.097 14 C -0.182 4.182 15 C -0.191 4.191 16 C 0.062 3.938 17 N -0.308 5.308 18 C -0.377 4.377 19 H 0.087 0.913 20 C -0.190 4.190 21 N -0.543 5.543 22 Si 0.720 3.280 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.205 1.205 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.253 0.747 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.035 0.965 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.205 0.058 -5.885 6.284 hybrid contribution -0.896 -0.408 0.739 1.231 sum 1.310 -0.350 -5.145 5.321 Atomic orbital electron populations 1.23837 0.96041 1.01667 1.02082 1.23028 0.96090 0.98571 0.99075 1.20484 0.97880 0.94999 0.98126 1.21582 0.98945 0.96232 1.00923 1.20528 0.80093 0.88765 0.81354 1.90622 1.66787 1.48792 1.38778 1.46039 1.39639 1.19878 1.28949 1.21257 0.94330 0.86575 0.96790 1.20723 0.92235 0.94549 0.87151 0.95226 1.22010 0.98746 0.99456 0.96766 1.21412 0.97105 0.99938 0.94862 1.21239 0.95503 0.99581 0.93330 1.21703 0.98434 0.95635 1.02383 1.21757 0.99261 1.00113 0.97995 1.20793 0.94051 0.89313 0.89624 1.44033 1.05179 1.82718 0.98887 1.19166 0.83132 1.27046 1.08402 0.91299 1.25044 0.97160 0.97006 0.99825 1.70000 1.33579 1.31866 1.18826 0.86492 0.86360 0.78059 0.77120 1.21287 1.21650 1.20542 0.88747 0.88602 0.87449 0.90894 0.90479 0.89308 0.88737 0.74737 0.92924 0.91792 0.93140 0.91680 0.93672 0.92982 0.93657 0.95058 0.91600 0.93346 0.93971 0.93050 0.89697 0.96509 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 14.32 29.02 0.42 -1.87 16 2 C -0.15 -1.81 9.52 -36.02 -0.34 -2.15 16 3 C -0.08 -1.08 4.95 -27.88 -0.14 -1.22 16 4 C -0.14 -2.06 5.68 -27.88 -0.16 -2.22 16 5 C 0.51 9.36 7.83 -10.99 -0.09 9.28 16 6 O -0.57 -12.08 15.98 5.56 0.09 -11.99 16 7 N -0.69 -13.01 3.84 -60.29 -0.23 -13.24 16 8 C 0.13 2.51 4.43 -4.04 -0.02 2.49 16 9 C 0.16 3.01 3.01 -67.60 -0.20 2.81 16 10 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 11 C -0.13 -2.14 5.04 -26.60 -0.13 -2.27 16 12 C -0.10 -1.54 4.71 -26.67 -0.13 -1.66 16 13 C -0.09 -1.68 0.77 -154.39 -0.12 -1.80 16 14 C -0.12 -2.21 7.99 37.16 0.30 -1.91 16 15 C -0.13 -2.09 8.48 37.16 0.32 -1.77 16 16 C 0.19 4.07 3.95 -3.71 -0.01 4.06 16 17 N -0.58 -12.78 2.41 -164.77 -0.40 -13.17 16 18 C -0.25 -5.96 6.97 -15.06 -0.10 -6.06 16 19 H 0.07 1.73 5.86 -52.49 -0.31 1.42 16 20 C 0.01 0.22 4.97 -17.43 -0.09 0.14 16 21 N -0.90 -23.75 11.23 55.49 0.62 -23.13 16 22 Si 0.89 20.71 29.58 -169.99 -5.03 15.68 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.09 0.92 8.06 -52.48 -0.42 0.50 16 27 H 0.10 1.10 7.84 -52.49 -0.41 0.69 16 28 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.07 1.11 7.75 -51.93 -0.40 0.71 16 30 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.41 8.07 7.39 -40.82 -0.30 7.77 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.32 7.42 -51.93 -0.39 0.93 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.12 6.35 -51.93 -0.33 0.79 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 1.28 5.98 -51.93 -0.31 0.97 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 2.11 6.19 -51.93 -0.32 1.79 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -26.93 370.11 -8.54 -35.47 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.67 Total: 8.97 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.50 Total: -4.17 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.01 Total: -49.54 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.93 -8.54 -35.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098949607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.999 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds