Wall clock time and date at job start Fri Apr 10 2020 20:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99980 * 2 1 4 4 C 1.53000 * 109.47059 * 125.00335 * 3 2 1 5 5 C 1.50700 * 109.47059 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99742 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99694 * 179.72480 * 5 4 3 8 8 C 1.46501 * 119.99585 * 180.27804 * 7 5 4 9 9 C 1.53005 * 109.47092 * 179.97438 * 8 7 5 10 10 H 1.09011 * 109.58187 * 60.07878 * 9 8 7 11 11 C 1.53185 * 109.58862 * 180.36110 * 9 8 7 12 12 C 1.53071 * 109.29756 * 174.27991 * 11 9 8 13 13 C 1.53039 * 109.66137 * 298.85178 * 12 11 9 14 14 C 1.53006 * 109.49392 * 301.34396 * 13 12 11 15 15 C 1.53001 * 109.52708 * 181.26503 * 13 12 11 16 16 C 1.53193 * 109.31447 * 61.29555 * 13 12 11 17 17 N 1.46918 * 109.58754 * 299.79863 * 9 8 7 18 18 C 1.36941 * 120.63037 * 6.62191 * 17 9 8 19 19 H 1.07997 * 120.00032 * 328.93533 * 18 17 9 20 20 C 1.38814 * 119.99771 * 148.93697 * 18 17 9 21 21 N 1.31619 * 120.00140 * 346.00394 * 20 18 17 22 22 Si 1.86801 * 119.99787 * 166.00810 * 20 18 17 23 23 H 1.48502 * 109.47140 * 89.99836 * 22 20 18 24 24 H 1.48493 * 109.47275 * 209.99773 * 22 20 18 25 25 H 1.48498 * 109.47341 * 329.99844 * 22 20 18 26 26 H 1.08007 * 120.00093 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00400 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00029 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47187 * 5.00068 * 3 2 1 30 30 H 1.09002 * 109.47164 * 245.00187 * 3 2 1 31 31 H 1.09000 * 109.47340 * 59.99826 * 4 3 2 32 32 H 1.09002 * 109.47012 * 299.99945 * 4 3 2 33 33 H 0.96996 * 120.00355 * 0.27426 * 7 5 4 34 34 H 1.09002 * 109.47330 * 299.99451 * 8 7 5 35 35 H 1.09005 * 109.47452 * 59.99761 * 8 7 5 36 36 H 1.09006 * 109.49779 * 294.37827 * 11 9 8 37 37 H 1.09003 * 109.49868 * 54.47257 * 11 9 8 38 38 H 1.08996 * 109.45607 * 178.75587 * 12 11 9 39 39 H 1.09012 * 109.34400 * 58.87246 * 12 11 9 40 40 H 1.09002 * 109.47047 * 179.83212 * 14 13 12 41 41 H 1.08998 * 109.47215 * 299.83790 * 14 13 12 42 42 H 1.09007 * 109.46636 * 59.83778 * 14 13 12 43 43 H 1.08999 * 109.46889 * 300.14252 * 15 13 12 44 44 H 1.08999 * 109.47183 * 60.14203 * 15 13 12 45 45 H 1.08998 * 109.47105 * 180.14544 * 15 13 12 46 46 H 1.08999 * 109.58882 * 185.58296 * 16 13 12 47 47 H 1.08997 * 109.70289 * 65.22314 * 16 13 12 48 48 H 0.96997 * 119.99563 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7881 2.6384 1.1819 6 8 3.5688 3.4651 0.3221 7 7 4.7008 2.8895 2.1413 8 6 5.4284 4.1610 2.1452 9 6 6.3957 4.1915 3.3303 10 1 7.1059 3.3691 3.2435 11 6 7.1516 5.5238 3.3421 12 6 8.0104 5.6070 4.6065 13 6 7.1120 5.5467 5.8440 14 6 6.1079 6.7005 5.8028 15 6 7.9705 5.6618 7.1053 16 6 6.3583 4.2131 5.8585 17 7 5.6419 4.0610 4.5847 18 6 4.2973 3.8021 4.5670 19 1 3.6878 4.1669 3.7535 20 6 3.7178 3.0708 5.5947 21 7 4.4772 2.3960 6.4316 22 14 1.8602 3.0442 5.7898 23 1 1.2960 1.9175 5.0041 24 1 1.5155 2.8694 7.2236 25 1 1.2923 4.3247 5.2969 26 1 -0.5401 -0.9354 0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 3.7400 0.5065 1.0920 32 1 2.4773 1.2355 2.1130 33 1 4.8758 2.2285 2.8292 34 1 5.9889 4.2618 1.2157 35 1 4.7201 4.9848 2.2334 36 1 7.7901 5.5877 2.4610 37 1 6.4375 6.3474 3.3349 38 1 8.5664 6.5445 4.6067 39 1 8.7092 4.7705 4.6240 40 1 5.4664 6.6554 6.6828 41 1 6.6447 7.6491 5.7925 42 1 5.4974 6.6187 4.9035 43 1 8.6864 4.8403 7.1336 44 1 8.5066 6.6107 7.0945 45 1 7.3301 5.6161 7.9861 46 1 5.6445 4.2057 6.6823 47 1 7.0654 3.3926 5.9803 48 1 4.0721 1.8847 7.1495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098949607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:11:58 Heat of formation + Delta-G solvation = -31.624754 kcal Electronic energy + Delta-G solvation = -25340.213842 eV Core-core repulsion = 22008.782234 eV Total energy + Delta-G solvation = -3331.431608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87102 -39.93219 -36.76886 -36.13809 -34.95266 -33.67078 -31.74080 -31.63198 -28.84352 -28.01308 -27.30640 -25.77489 -24.31821 -23.64889 -21.69097 -20.96335 -20.66204 -19.45557 -18.42964 -17.53705 -17.25175 -16.81493 -16.54166 -15.98350 -15.63128 -15.45983 -15.30330 -14.87553 -14.76521 -14.56333 -14.26938 -13.97450 -13.74195 -13.46063 -13.10571 -13.02775 -12.99525 -12.76387 -12.72291 -12.49699 -12.48858 -12.22254 -12.11288 -11.99151 -11.89778 -11.85756 -11.61682 -11.25705 -11.00808 -10.89188 -10.72122 -10.46395 -10.20669 -9.77506 -8.49203 -7.78916 -5.24534 1.38924 1.40485 1.47178 1.52386 1.79308 2.48842 2.55153 3.35861 3.61403 3.86595 3.99989 4.01879 4.05242 4.20820 4.22595 4.34112 4.38157 4.45013 4.47628 4.54460 4.66833 4.71201 4.80432 4.88002 4.93354 4.95302 4.97537 5.06221 5.07074 5.10936 5.14474 5.17550 5.22190 5.26641 5.40598 5.50388 5.55431 5.61078 5.69930 5.73614 5.76577 5.83418 5.90563 5.90909 6.48763 6.79140 7.24180 7.42151 7.93619 8.47044 9.25005 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.005094 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.677401 B = 5495.045449 C = 6653.901933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.073 4.073 4 C -0.130 4.130 5 C 0.502 3.498 6 O -0.598 6.598 7 N -0.697 5.697 8 C 0.140 3.860 9 C 0.161 3.839 10 H 0.030 0.970 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.092 4.092 14 C -0.117 4.117 15 C -0.128 4.128 16 C 0.197 3.803 17 N -0.595 5.595 18 C -0.228 4.228 19 H 0.059 0.941 20 C -0.031 4.031 21 N -0.923 5.923 22 Si 0.931 3.069 23 H -0.280 1.280 24 H -0.298 1.298 25 H -0.287 1.287 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.412 0.588 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.028 0.972 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.048 0.952 47 H -0.006 1.006 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.510 -0.172 -6.349 7.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.176 4.176 3 C -0.110 4.110 4 C -0.170 4.170 5 C 0.290 3.710 6 O -0.481 6.481 7 N -0.346 5.346 8 C 0.015 3.985 9 C 0.055 3.945 10 H 0.048 0.952 11 C -0.164 4.164 12 C -0.129 4.129 13 C -0.094 4.094 14 C -0.175 4.175 15 C -0.186 4.186 16 C 0.072 3.928 17 N -0.319 5.319 18 C -0.358 4.358 19 H 0.077 0.923 20 C -0.227 4.227 21 N -0.569 5.569 22 Si 0.761 3.239 23 H -0.207 1.207 24 H -0.225 1.225 25 H -0.214 1.214 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.145 0.855 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.249 0.751 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.012 0.988 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.315 0.307 -6.807 7.577 hybrid contribution -1.237 -0.441 0.977 1.637 sum 2.078 -0.134 -5.830 6.191 Atomic orbital electron populations 1.24040 0.96032 1.02477 1.00861 1.23045 0.96322 0.98176 1.00101 1.20414 0.97385 0.95703 0.97531 1.21601 0.99248 0.95071 1.01086 1.21126 0.79683 0.89603 0.80562 1.90602 1.67594 1.50043 1.39861 1.46098 1.39863 1.19748 1.28894 1.21212 0.93875 0.85885 0.97491 1.20856 0.92020 0.96094 0.85554 0.95234 1.21958 0.98796 0.97274 0.98374 1.21391 0.96682 1.01498 0.93292 1.21152 0.95768 0.96835 0.95621 1.21624 0.98214 0.97047 1.00586 1.21706 0.98909 1.01683 0.96324 1.20566 0.92856 0.91047 0.88369 1.44178 1.04782 1.82698 1.00216 1.19127 0.84248 1.25177 1.07295 0.92340 1.25418 0.99156 0.97773 1.00360 1.70106 1.34180 1.33221 1.19424 0.85841 0.84008 0.77628 0.76386 1.20690 1.22490 1.21353 0.86684 0.89137 0.85474 0.92794 0.90627 0.86604 0.89339 0.75128 0.91296 0.94038 0.90305 0.92302 0.90882 0.92753 0.95242 0.92199 0.93599 0.93026 0.91322 0.94009 0.93394 0.98775 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.18 14.32 67.79 0.97 -3.21 16 2 C -0.16 -3.55 9.52 25.65 0.24 -3.31 16 3 C -0.07 -1.98 4.95 29.85 0.15 -1.84 16 4 C -0.13 -3.81 5.68 29.85 0.17 -3.65 16 5 C 0.50 18.48 7.83 87.66 0.69 19.16 16 6 O -0.60 -25.44 15.98 -3.02 -0.05 -25.49 16 7 N -0.70 -25.99 3.84 -463.05 -1.78 -27.77 16 8 C 0.14 5.14 4.43 86.38 0.38 5.52 16 9 C 0.16 5.89 3.01 44.98 0.14 6.02 16 10 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 11 C -0.12 -3.79 5.04 30.68 0.15 -3.64 16 12 C -0.09 -2.66 4.71 30.63 0.14 -2.51 16 13 C -0.09 -3.13 0.77 -52.10 -0.04 -3.17 16 14 C -0.12 -4.02 7.99 71.98 0.58 -3.44 16 15 C -0.13 -3.76 8.48 71.98 0.61 -3.15 16 16 C 0.20 8.64 3.95 86.36 0.34 8.99 16 17 N -0.60 -26.17 2.41 -675.22 -1.63 -27.79 16 18 C -0.23 -11.14 6.97 84.03 0.59 -10.55 16 19 H 0.06 2.99 5.86 -2.91 -0.02 2.97 16 20 C -0.03 -1.58 4.97 84.86 0.42 -1.16 16 21 N -0.92 -50.11 11.23 21.65 0.24 -49.87 16 22 Si 0.93 43.34 29.58 68.60 2.03 45.37 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H 0.11 1.96 8.06 -2.91 -0.02 1.93 16 27 H 0.09 1.99 7.84 -2.91 -0.02 1.97 16 28 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.05 1.65 7.75 -2.39 -0.02 1.63 16 30 H 0.08 2.06 8.10 -2.39 -0.02 2.05 16 31 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.41 16.01 7.39 -92.71 -0.69 15.32 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.04 1.72 7.42 -2.38 -0.02 1.70 16 36 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.06 1.89 6.35 -2.39 -0.02 1.88 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.74 5.98 -2.38 -0.01 1.72 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.05 2.46 6.19 -2.39 -0.01 2.44 16 47 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 Total: -1.00 -58.99 370.11 4.57 -54.42 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.23 Total: 31.06 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 5.53 Total: 0.07 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.16 Total: -105.43 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -58.99 4.57 -54.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098949607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.796 kcal (2) G-P(sol) polarization free energy of solvation -58.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds