Wall clock time and date at job start Fri Apr 10 2020 20:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50692 * 120.00057 * 2 1 4 4 C 1.53000 * 109.47494 * 125.00108 * 3 2 1 5 5 C 1.53000 * 109.46827 * 59.99831 * 4 3 2 6 6 C 1.53007 * 109.47105 * 300.00177 * 4 3 2 7 7 C 1.52993 * 109.47500 * 179.97438 * 4 3 2 8 8 N 1.46507 * 109.47251 * 179.97438 * 7 4 3 9 9 C 1.34778 * 119.99867 * 180.27339 * 8 7 4 10 10 O 1.21587 * 119.99971 * 354.71153 * 9 8 7 11 11 N 1.34769 * 119.99641 * 174.70687 * 9 8 7 12 12 C 1.46932 * 120.63196 * 4.75828 * 11 9 8 13 13 C 1.52768 * 109.00473 * 233.58119 * 12 11 9 14 14 C 1.53035 * 109.38171 * 305.58540 * 13 12 11 15 15 C 1.53041 * 109.54169 * 61.24372 * 14 13 12 16 16 H 1.09007 * 109.49233 * 58.58102 * 15 14 13 17 17 C 1.50699 * 109.50035 * 178.67953 * 15 14 13 18 18 H 1.08000 * 120.00022 * 5.24458 * 17 15 14 19 19 C 1.37876 * 119.99775 * 185.24394 * 17 15 14 20 20 N 1.31512 * 120.00033 * 355.12634 * 19 17 15 21 21 Si 1.86804 * 119.99725 * 175.12563 * 19 17 15 22 22 H 1.48500 * 109.47052 * 94.99917 * 21 19 17 23 23 H 1.48493 * 109.47123 * 214.99761 * 21 19 17 24 24 H 1.48498 * 109.46995 * 334.99963 * 21 19 17 25 25 C 1.46928 * 120.63266 * 185.03334 * 11 9 8 26 26 H 1.08001 * 119.99773 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00108 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99551 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47528 * 5.00265 * 3 2 1 30 30 H 1.08998 * 109.47064 * 245.00399 * 3 2 1 31 31 H 1.08995 * 109.47100 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47214 * 299.99895 * 5 4 3 33 33 H 1.08998 * 109.46923 * 60.00204 * 5 4 3 34 34 H 1.08997 * 109.46569 * 299.99780 * 6 4 3 35 35 H 1.09005 * 109.46629 * 59.99382 * 6 4 3 36 36 H 1.08995 * 109.47291 * 179.97438 * 6 4 3 37 37 H 1.09005 * 109.47418 * 60.00221 * 7 4 3 38 38 H 1.08998 * 109.47605 * 300.00051 * 7 4 3 39 39 H 0.96997 * 119.99402 * 0.02562 * 8 7 4 40 40 H 1.08996 * 109.58716 * 353.41079 * 12 11 9 41 41 H 1.08995 * 109.58875 * 113.84345 * 12 11 9 42 42 H 1.09003 * 109.55999 * 185.55113 * 13 12 11 43 43 H 1.08991 * 109.38577 * 65.51820 * 13 12 11 44 44 H 1.09004 * 109.46610 * 301.21987 * 14 13 12 45 45 H 1.09006 * 109.44588 * 181.25340 * 14 13 12 46 46 H 0.97000 * 119.99341 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.59016 * 246.16136 * 25 11 9 48 48 H 1.08997 * 109.58373 * 6.58083 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0246 0.1729 1.0558 6 6 2.2522 1.1962 2.4890 7 6 3.8005 2.6578 1.1812 8 7 4.7304 2.6848 2.3130 9 6 5.5116 3.7639 2.5177 10 8 5.5154 4.6735 1.7109 11 7 6.2885 3.8346 3.6167 12 6 6.3741 2.7007 4.5472 13 6 6.0530 3.1898 5.9583 14 6 6.9706 4.3629 6.3103 15 6 6.7282 5.5141 5.3315 16 1 5.6824 5.8179 5.3792 17 6 7.6089 6.6805 5.6986 18 1 8.3353 6.5802 6.4915 19 6 7.4872 7.8758 5.0223 20 7 6.6717 7.9700 3.9949 21 14 8.4809 9.3615 5.5653 22 1 9.7285 9.4423 4.7640 23 1 7.6798 10.5948 5.3598 24 1 8.8243 9.2283 7.0039 25 6 7.0612 5.0492 3.9103 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6212 1.4025 -0.9314 31 1 4.7164 0.1925 1.8978 32 1 3.4795 -0.7711 1.0559 33 1 4.5823 0.2704 0.1244 34 1 1.5473 2.0227 2.5785 35 1 1.7072 0.2522 2.4889 36 1 2.9443 1.2157 3.3308 37 1 3.0959 3.4846 1.2706 38 1 4.3584 2.7549 0.2498 39 1 4.7812 1.9276 2.9171 40 1 5.6565 1.9338 4.2557 41 1 7.3824 2.2871 4.5274 42 1 6.2096 2.3791 6.6700 43 1 5.0137 3.5154 6.0006 44 1 8.0106 4.0431 6.2443 45 1 6.7576 4.6984 7.3254 46 1 6.5865 8.8108 3.5189 47 1 8.1267 4.8311 3.8375 48 1 6.7969 5.8314 3.1987 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595638310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:00 Heat of formation + Delta-G solvation = -26.657381 kcal Electronic energy + Delta-G solvation = -24730.883588 eV Core-core repulsion = 21399.667381 eV Total energy + Delta-G solvation = -3331.216206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89385 -38.39806 -36.66148 -34.36615 -33.32695 -32.16325 -31.50203 -29.72327 -27.46310 -27.17252 -26.18845 -25.00429 -23.84914 -21.78571 -20.44330 -19.94223 -19.07883 -18.57173 -17.49846 -16.19023 -15.87773 -15.38389 -15.10837 -14.75324 -14.47505 -14.34186 -13.90054 -13.67806 -13.46304 -13.36982 -13.30100 -12.67444 -12.54420 -12.50673 -12.17757 -11.91110 -11.82162 -11.76706 -11.54639 -11.12992 -10.99640 -10.88462 -10.83195 -10.58999 -10.48879 -10.36093 -10.22041 -9.82581 -9.53336 -9.37367 -9.04484 -8.88738 -8.63518 -8.42131 -7.58308 -5.95832 -4.04044 2.05799 3.29402 3.35169 3.40972 3.43743 3.93379 4.40528 4.46369 4.51052 4.61389 4.71344 4.93692 5.00651 5.21893 5.31427 5.34562 5.40831 5.52981 5.55850 5.58139 5.63246 5.65878 5.68207 5.81779 5.87631 5.89148 5.98614 6.00279 6.14831 6.19149 6.19987 6.34442 6.41007 6.55652 6.62732 6.69484 6.84499 6.91837 7.01950 7.10799 7.38894 7.56621 7.77924 7.96514 8.09042 8.44600 8.65624 9.00287 9.33005 9.61410 11.09885 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.026723 B = 0.003339 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.553082 B = 8383.929244 C = 8936.856675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.084 4.084 4 C -0.071 4.071 5 C -0.142 4.142 6 C -0.140 4.140 7 C 0.150 3.850 8 N -0.754 5.754 9 C 0.700 3.300 10 O -0.586 6.586 11 N -0.623 5.623 12 C 0.117 3.883 13 C -0.134 4.134 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.131 3.869 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.389 0.611 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.263 0.737 47 H 0.038 0.962 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 -18.342 -4.365 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.162 4.162 3 C -0.121 4.121 4 C -0.072 4.072 5 C -0.199 4.199 6 C -0.198 4.198 7 C 0.025 3.975 8 N -0.415 5.415 9 C 0.402 3.598 10 O -0.463 6.463 11 N -0.360 5.360 12 C -0.007 4.007 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.011 3.989 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.227 0.773 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.817 -17.495 -5.100 20.244 hybrid contribution 0.505 0.382 0.616 0.883 sum -8.312 -17.113 -4.484 19.546 Atomic orbital electron populations 1.23842 0.95999 1.01706 1.02119 1.22920 0.95844 0.98464 0.98956 1.20764 0.97780 0.95669 0.97901 1.20760 0.95287 0.95201 0.95927 1.21913 0.98516 0.97380 1.02134 1.21878 0.99902 1.01957 0.96020 1.21112 0.91221 0.95868 0.89303 1.45355 1.43883 1.19869 1.32398 1.15954 0.79117 0.82332 0.82443 1.90912 1.70470 1.39055 1.45859 1.47782 1.48267 1.17752 1.22220 1.21383 1.00282 0.88535 0.90540 1.21877 1.00981 0.99106 0.95251 1.21616 0.97543 0.95427 1.00146 1.19000 0.97806 0.91552 0.89613 0.95177 1.21066 1.20622 0.95665 1.18669 0.92416 1.25060 0.95338 0.98842 0.94772 1.69931 1.36581 1.26107 1.18882 0.86599 0.80016 0.82561 0.78940 1.20743 1.21199 1.19915 1.22171 0.91661 0.83510 1.01590 0.88636 0.88776 0.87368 0.91036 0.90563 0.92671 0.92335 0.92307 0.92353 0.92336 0.92701 0.91976 0.91910 0.77341 0.92362 0.92236 0.92372 0.92225 0.93258 0.93047 0.92723 0.94325 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 14.32 29.01 0.42 -1.05 16 2 C -0.14 -1.10 7.65 -36.03 -0.28 -1.37 16 3 C -0.08 -0.71 4.73 -27.89 -0.13 -0.84 16 4 C -0.07 -0.68 0.55 -154.51 -0.09 -0.76 16 5 C -0.14 -1.21 8.04 37.16 0.30 -0.91 16 6 C -0.14 -1.31 8.06 37.16 0.30 -1.01 16 7 C 0.15 2.00 4.57 -4.04 -0.02 1.98 16 8 N -0.75 -11.52 4.87 -65.22 -0.32 -11.84 16 9 C 0.70 14.65 8.30 -86.92 -0.72 13.93 16 10 O -0.59 -15.05 15.79 5.29 0.08 -14.97 16 11 N -0.62 -12.81 2.98 -178.76 -0.53 -13.35 16 12 C 0.12 1.83 6.40 -3.93 -0.03 1.81 16 13 C -0.13 -2.16 6.06 -26.83 -0.16 -2.32 16 14 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 15 C 0.04 0.99 2.19 -91.65 -0.20 0.79 16 16 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 17 C -0.52 -14.27 8.49 -34.44 -0.29 -14.56 16 18 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 19 C 0.06 1.77 5.36 -17.82 -0.10 1.67 16 20 N -0.88 -26.02 11.61 55.43 0.64 -25.38 16 21 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 25 C 0.13 3.25 5.46 -3.71 -0.02 3.23 16 26 H 0.10 0.69 7.84 -52.49 -0.41 0.28 16 27 H 0.09 0.59 8.06 -52.48 -0.42 0.17 16 28 H 0.11 0.74 6.81 -52.49 -0.36 0.39 16 29 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.48 6.86 -51.93 -0.36 0.13 16 32 H 0.06 0.42 6.53 -51.93 -0.34 0.08 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.48 7.22 -51.93 -0.37 0.11 16 36 H 0.05 0.52 6.86 -51.93 -0.36 0.17 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.39 4.92 3.62 -40.82 -0.15 4.78 16 40 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.12 3.43 5.38 -51.93 -0.28 3.15 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -32.00 367.70 -9.11 -41.11 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.35 Total: 4.17 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.15 Total: -1.74 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.21 Total: -50.57 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.08 Total: -14.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.00 -9.11 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.450 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds