Wall clock time and date at job start Fri Apr 10 2020 20:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 110.91612 * 2 1 4 4 C 1.54908 * 111.00301 * 236.10145 * 2 1 3 5 5 N 1.47420 * 104.83442 * 278.93533 * 4 2 1 6 6 C 1.36940 * 125.65126 * 155.90164 * 5 4 2 7 7 H 1.07998 * 119.99982 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99987 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00364 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00169 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46782 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47116 * 120.00152 * 10 8 6 13 13 H 1.48494 * 109.47382 * 240.00262 * 10 8 6 14 14 C 1.47023 * 108.70487 * 335.87250 * 5 4 2 15 15 C 1.54330 * 107.26602 * 1.06017 * 14 5 4 16 16 H 1.08998 * 110.87010 * 140.63110 * 15 14 5 17 17 N 1.46500 * 110.71703 * 263.82996 * 15 14 5 18 18 C 1.34787 * 120.00124 * 268.52536 * 17 15 14 19 19 O 1.21280 * 119.99549 * 359.97438 * 18 17 15 20 20 C 1.50699 * 120.00196 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47078 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.46817 * 180.02562 * 21 20 18 23 23 C 1.53000 * 109.47233 * 60.00194 * 22 21 20 24 24 C 1.52997 * 109.47060 * 299.99657 * 23 22 21 25 25 C 1.52999 * 109.47317 * 59.99960 * 24 23 22 26 26 H 1.09006 * 109.47134 * 296.09780 * 1 2 3 27 27 H 1.09002 * 109.47238 * 56.09177 * 1 2 3 28 28 H 1.09000 * 109.47689 * 176.09720 * 1 2 3 29 29 H 1.08997 * 109.47171 * 183.90082 * 3 2 1 30 30 H 1.08998 * 109.47656 * 303.90447 * 3 2 1 31 31 H 1.09001 * 109.47083 * 63.90680 * 3 2 1 32 32 H 1.09004 * 110.36867 * 37.77131 * 4 2 1 33 33 H 1.08998 * 110.36672 * 160.09606 * 4 2 1 34 34 H 0.96998 * 120.00727 * 180.02562 * 9 8 6 35 35 H 1.08992 * 109.88622 * 241.64502 * 14 5 4 36 36 H 1.09000 * 109.88543 * 120.47007 * 14 5 4 37 37 H 0.96998 * 120.00098 * 88.52430 * 17 15 14 38 38 H 1.09002 * 109.46959 * 299.99768 * 20 18 17 39 39 H 1.08993 * 109.47194 * 59.99505 * 21 20 18 40 40 H 1.09002 * 109.46695 * 299.99519 * 21 20 18 41 41 H 1.08992 * 109.47063 * 299.99823 * 22 21 20 42 42 H 1.09004 * 109.46733 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47398 * 59.99826 * 23 22 21 44 44 H 1.09001 * 109.47194 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.47853 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.47153 * 300.00319 * 24 23 22 47 47 H 1.09000 * 109.47486 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.46716 * 60.00091 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 2.0138 -2.2158 -0.7735 6 6 1.9458 -3.2999 -1.6074 7 1 1.9418 -3.1582 -2.6781 8 6 1.8831 -4.5810 -1.0767 9 7 1.8885 -4.7538 0.2281 10 14 1.7911 -6.0599 -2.2142 11 1 1.8005 -5.5996 -3.6261 12 1 2.9607 -6.9427 -1.9740 13 1 0.5394 -6.8129 -1.9469 14 6 2.0285 -2.2647 0.6958 15 6 2.0861 -0.8080 1.2021 16 1 1.4541 -0.6769 2.0804 17 7 3.4666 -0.4157 1.4961 18 6 3.9655 -0.5843 2.7368 19 8 3.2713 -1.0603 3.6099 20 6 5.3855 -0.1802 3.0393 21 6 5.6975 -0.4745 4.5079 22 6 7.1390 -0.0637 4.8152 23 6 7.3109 1.4328 4.5473 24 6 6.9988 1.7272 3.0787 25 6 5.5575 1.3163 2.7713 26 1 -0.3634 0.4521 0.9229 27 1 -0.3634 0.5733 -0.8529 28 1 -0.3634 -1.0252 -0.0699 29 1 3.1636 1.4025 -0.0699 30 1 1.6705 1.9732 -0.8529 31 1 1.7837 1.9299 0.9229 32 1 1.4671 -0.6460 -2.0837 33 1 3.1181 -0.5233 -1.4025 34 1 1.8450 -5.6490 0.5991 35 1 2.9062 -2.8117 1.0398 36 1 1.1218 -2.7480 1.0597 37 1 4.0217 -0.0346 0.7978 38 1 6.0672 -0.7441 2.4026 39 1 5.5745 -1.5405 4.6989 40 1 5.0158 0.0897 5.1443 41 1 7.8210 -0.6274 4.1788 42 1 7.3612 -0.2730 5.8616 43 1 6.6289 1.9967 5.1837 44 1 8.3380 1.7254 4.7657 45 1 7.1217 2.7932 2.8876 46 1 7.6809 1.1633 2.4422 47 1 5.3352 1.5256 1.7249 48 1 4.8754 1.8801 3.4077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972764780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:11 Heat of formation + Delta-G solvation = -42.139891 kcal Electronic energy + Delta-G solvation = -25395.620020 eV Core-core repulsion = 22063.732442 eV Total energy + Delta-G solvation = -3331.887578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09060 -38.54618 -37.08892 -33.84360 -32.99345 -31.11172 -30.76563 -30.64770 -27.96623 -26.76785 -25.61352 -24.02963 -22.92477 -22.52113 -20.54428 -19.92433 -19.54973 -18.62781 -16.87880 -16.63697 -15.79360 -15.27364 -14.84883 -14.43755 -14.20870 -14.15488 -13.89879 -13.77278 -13.61620 -13.16290 -12.71760 -12.48057 -12.39711 -12.25528 -11.98611 -11.92990 -11.64108 -11.37193 -11.27808 -11.20802 -11.03942 -10.95624 -10.78460 -10.69288 -10.46880 -10.35849 -10.20032 -10.16564 -9.97394 -9.84062 -9.62084 -9.23164 -8.60971 -8.34980 -6.80358 -5.67101 -3.02021 3.10529 3.41142 3.46245 3.49237 3.63918 4.51609 4.60402 4.65169 4.68276 4.98224 5.13295 5.14022 5.25861 5.30978 5.33910 5.34776 5.41059 5.46019 5.53043 5.55887 5.66101 5.75370 5.84630 5.91133 5.94678 5.98551 6.01214 6.05677 6.07770 6.13630 6.18787 6.24042 6.27932 6.30941 6.40828 6.43040 6.61166 6.63758 6.70386 6.81607 7.00964 7.58957 7.68649 7.86116 8.03570 8.28185 8.73140 9.24302 9.85075 10.50680 11.43499 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.004480 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.694025 B = 6249.118699 C = 7155.999857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.129 4.129 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.176 3.824 15 C 0.123 3.877 16 H 0.087 0.913 17 N -0.709 5.709 18 C 0.515 3.485 19 O -0.543 6.543 20 C -0.106 4.106 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.109 4.109 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.014 0.986 34 H 0.252 0.748 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.394 0.606 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.080 15.365 5.036 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.050 3.950 15 C 0.018 3.982 16 H 0.105 0.895 17 N -0.360 5.360 18 C 0.301 3.699 19 O -0.421 6.421 20 C -0.128 4.128 21 C -0.136 4.136 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.146 4.146 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.229 0.771 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.550 14.769 5.675 17.531 hybrid contribution 0.256 -0.795 -0.994 1.299 sum 7.806 13.974 4.681 16.677 Atomic orbital electron populations 1.21595 0.93391 1.02892 1.00440 1.22012 0.96294 0.94137 0.96740 1.21659 1.00202 0.95607 1.01221 1.21621 0.96467 0.85795 0.94332 1.44453 1.86888 0.99711 1.01879 1.19073 1.43768 0.84011 0.88925 0.90452 1.24805 1.02252 0.97360 0.95925 1.69978 1.56742 1.20674 1.09163 0.86079 0.77249 0.83053 0.79576 1.20562 1.21847 1.21775 1.21511 1.01510 0.88683 0.83285 1.22456 0.81440 0.97356 0.96913 0.89455 1.46018 1.14677 1.64079 1.11214 1.20506 0.88955 0.78082 0.82374 1.90680 1.60733 1.44380 1.46274 1.21343 0.94438 0.97644 0.99365 1.21316 0.95902 1.02357 0.94022 1.21568 0.96955 0.95934 1.01300 1.21557 1.01072 0.96615 0.96564 1.21528 0.96317 1.00943 0.96734 1.21512 0.97392 0.94056 1.01687 0.93393 0.92956 0.91233 0.93099 0.92769 0.92931 0.94175 0.96796 0.93762 0.93477 0.92975 0.77117 0.88784 0.91136 0.91354 0.91961 0.91875 0.92001 0.92212 0.91873 0.91769 0.91571 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.57 37.16 0.32 -1.71 16 2 C -0.09 -1.51 0.83 -152.37 -0.13 -1.63 16 3 C -0.13 -1.67 8.22 37.16 0.31 -1.37 16 4 C 0.14 2.86 6.12 -2.53 -0.02 2.84 16 5 N -0.60 -15.11 3.38 -170.08 -0.57 -15.69 16 6 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -27.60 10.31 55.49 0.57 -27.03 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 14 C 0.18 4.36 4.79 -3.06 -0.01 4.34 16 15 C 0.12 2.38 2.59 -66.10 -0.17 2.21 16 16 H 0.09 1.78 7.45 -51.93 -0.39 1.39 16 17 N -0.71 -11.83 4.35 -52.03 -0.23 -12.06 16 18 C 0.52 8.83 7.15 -10.98 -0.08 8.75 16 19 O -0.54 -11.54 15.63 5.56 0.09 -11.46 16 20 C -0.11 -1.36 2.53 -91.77 -0.23 -1.60 16 21 C -0.10 -1.23 4.49 -26.73 -0.12 -1.35 16 22 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 23 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 24 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 25 C -0.11 -1.10 5.10 -26.73 -0.14 -1.23 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 29 H 0.05 0.60 6.48 -51.93 -0.34 0.27 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 33 H 0.01 0.28 7.98 -51.93 -0.41 -0.14 16 34 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.05 1.34 7.41 -51.93 -0.38 0.96 16 36 H 0.05 1.47 7.38 -51.93 -0.38 1.09 16 37 H 0.39 5.73 6.53 -40.82 -0.27 5.46 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.62 7.56 -51.93 -0.39 0.22 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -32.00 365.27 -9.51 -41.52 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.85 Total: 3.11 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.00 Total: -1.20 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.23 Total: -54.78 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.00 -9.51 -41.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972764780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.625 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds