Wall clock time and date at job start Fri Apr 10 2020 20:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46991 * 2 1 4 4 C 1.53001 * 109.47267 * 64.99839 * 3 2 1 5 5 C 1.53005 * 109.47107 * 185.46543 * 4 3 2 6 6 C 1.50697 * 109.47154 * 184.99827 * 3 2 1 7 7 O 1.21282 * 120.00315 * 274.65391 * 6 3 2 8 8 N 1.34780 * 120.00177 * 94.65057 * 6 3 2 9 9 C 1.49627 * 126.06902 * 355.08355 * 8 6 3 10 10 C 1.51519 * 102.49457 * 154.35145 * 9 8 6 11 11 H 1.08999 * 111.13206 * 287.40877 * 10 9 8 12 12 C 1.51568 * 123.33622 * 151.62709 * 10 9 8 13 13 C 1.56336 * 101.85093 * 207.24480 * 12 10 9 14 14 C 1.56103 * 105.72036 * 25.44065 * 13 12 10 15 15 H 1.09000 * 110.63693 * 125.64568 * 14 13 12 16 16 N 1.46501 * 110.52318 * 248.33213 * 14 13 12 17 17 C 1.36935 * 119.99718 * 269.57852 * 16 14 13 18 18 H 1.08001 * 120.00241 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00213 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00592 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99496 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47605 * 89.99524 * 21 19 17 23 23 H 1.48500 * 109.46995 * 209.99681 * 21 19 17 24 24 H 1.48504 * 109.47368 * 329.99131 * 21 19 17 25 25 C 1.49699 * 103.99614 * 6.95996 * 14 13 12 26 26 H 1.09003 * 107.87449 * 77.71897 * 25 14 13 27 27 C 1.49277 * 126.07659 * 175.08545 * 8 6 3 28 28 H 1.08999 * 109.47411 * 300.00311 * 1 2 3 29 29 H 1.09004 * 109.47328 * 60.00149 * 1 2 3 30 30 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47639 * 240.00061 * 2 1 3 32 32 H 1.09007 * 109.46869 * 119.99682 * 2 1 3 33 33 H 1.08995 * 109.47161 * 304.99995 * 3 2 1 34 34 H 1.08999 * 109.47182 * 305.46647 * 4 3 2 35 35 H 1.08997 * 109.46875 * 65.46325 * 4 3 2 36 36 H 1.09004 * 109.46924 * 294.79547 * 5 4 3 37 37 H 1.08998 * 109.46945 * 54.79528 * 5 4 3 38 38 H 1.09003 * 109.46927 * 174.80167 * 5 4 3 39 39 H 1.09003 * 110.80206 * 36.10005 * 9 8 6 40 40 H 1.08997 * 110.96988 * 272.67897 * 9 8 6 41 41 H 1.08997 * 110.96041 * 325.39343 * 12 10 9 42 42 H 1.08998 * 110.95755 * 89.09558 * 12 10 9 43 43 H 1.08992 * 110.19060 * 144.53216 * 13 12 10 44 44 H 1.09007 * 110.18431 * 266.38372 * 13 12 10 45 45 H 0.96996 * 120.00214 * 89.57627 * 16 14 13 46 46 H 0.96991 * 120.00301 * 180.02562 * 20 19 17 47 47 H 1.09003 * 110.39709 * 292.41502 * 27 8 6 48 48 H 1.09004 * 110.39872 * 54.69506 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0248 3.6052 1.2512 6 6 3.5418 1.4444 -0.1238 7 8 4.2321 1.3295 0.8668 8 7 4.1180 1.5736 -1.3353 9 6 3.4046 1.6200 -2.6497 10 6 4.3721 2.3952 -3.5207 11 1 4.3858 3.4509 -3.2496 12 6 4.4682 2.2158 -5.0227 13 6 5.9537 2.6168 -5.2995 14 6 6.7197 2.3489 -3.9660 15 1 7.5754 1.6962 -4.1390 16 7 7.1518 3.6105 -3.3595 17 6 8.3789 4.1338 -3.6687 18 1 9.0279 3.6167 -4.3599 19 6 8.7882 5.3295 -3.0944 20 7 9.9678 5.8323 -3.3912 21 14 7.6653 6.2241 -1.8994 22 1 7.9382 5.7543 -0.5174 23 1 7.9162 7.6854 -1.9840 24 1 6.2489 5.9442 -2.2469 25 6 5.7078 1.6685 -3.0976 26 1 5.6344 0.6299 -3.4201 27 6 5.5813 1.6957 -1.6043 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6053 1.9815 -0.8418 34 1 0.5573 2.0399 1.4442 35 1 2.1470 1.6473 2.1418 36 1 3.1104 3.6933 1.2073 37 1 1.5870 4.0628 0.3642 38 1 1.6548 4.1125 2.1422 39 1 2.4567 2.1503 -2.5572 40 1 3.2477 0.6161 -3.0441 41 1 4.2854 1.1787 -5.3039 42 1 3.7808 2.8850 -5.5400 43 1 6.3658 2.0034 -6.1007 44 1 6.0153 3.6727 -5.5634 45 1 6.5688 4.0751 -2.7390 46 1 10.2539 6.6675 -2.9896 47 1 5.9601 2.6435 -1.2217 48 1 6.1212 0.8625 -1.1544 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026201713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:28 Heat of formation + Delta-G solvation = -24.528427 kcal Electronic energy + Delta-G solvation = -25220.074003 eV Core-core repulsion = 21888.950114 eV Total energy + Delta-G solvation = -3331.123888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71797 -39.14221 -35.93268 -35.32957 -33.37449 -31.92645 -31.13780 -29.91641 -28.78736 -27.26834 -25.69005 -23.53395 -22.98808 -22.75430 -21.24547 -20.15330 -19.03664 -18.80496 -17.87389 -17.04734 -16.27385 -15.41206 -15.03914 -14.84244 -14.66421 -14.41724 -14.15711 -14.01619 -13.85999 -13.27142 -12.95955 -12.78158 -12.58628 -12.57319 -12.24937 -12.12243 -12.02856 -11.75498 -11.71002 -11.44944 -11.15636 -11.03631 -10.94319 -10.85328 -10.77892 -10.69129 -10.46641 -10.34279 -10.13489 -9.82961 -9.58528 -9.52675 -8.94916 -8.59102 -7.29489 -5.78730 -3.14344 2.70438 2.89624 3.35989 3.40037 3.45526 4.06198 4.38074 4.49521 4.57703 4.66014 4.80741 4.91959 5.00560 5.07845 5.13295 5.16938 5.24444 5.28080 5.36601 5.43296 5.46948 5.51064 5.53018 5.57518 5.61052 5.67146 5.69243 5.80751 5.84327 5.87198 5.88678 5.99031 6.04002 6.09129 6.12133 6.17479 6.20384 6.26089 6.32357 6.39524 6.49289 6.67706 6.92010 7.56950 7.97690 8.24029 8.40682 9.18510 9.91234 10.10459 11.39646 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017155 B = 0.004742 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.773555 B = 5903.736654 C = 6892.446949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.104 4.104 4 C -0.110 4.110 5 C -0.156 4.156 6 C 0.533 3.467 7 O -0.542 6.542 8 N -0.625 5.625 9 C 0.117 3.883 10 C -0.128 4.128 11 H 0.088 0.912 12 C -0.099 4.099 13 C -0.144 4.144 14 C 0.203 3.797 15 H 0.066 0.934 16 N -0.742 5.742 17 C -0.244 4.244 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.933 5.933 21 Si 0.879 3.121 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.279 1.279 25 C -0.123 4.123 26 H 0.072 0.928 27 C 0.130 3.870 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.361 0.639 46 H 0.260 0.740 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.198 -11.245 2.123 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.125 4.125 4 C -0.147 4.147 5 C -0.214 4.214 6 C 0.322 3.678 7 O -0.419 6.419 8 N -0.360 5.360 9 C -0.004 4.004 10 C -0.147 4.147 11 H 0.106 0.894 12 C -0.137 4.137 13 C -0.185 4.185 14 C 0.092 3.908 15 H 0.084 0.916 16 N -0.385 5.385 17 C -0.374 4.374 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.580 5.580 21 Si 0.709 3.291 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.143 4.143 26 H 0.090 0.910 27 C 0.009 3.991 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.194 0.806 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.603 -11.271 2.671 23.636 hybrid contribution -0.683 0.865 0.715 1.313 sum -21.286 -10.407 3.386 23.935 Atomic orbital electron populations 1.21819 0.94974 1.01880 1.02158 1.21419 0.96363 0.94292 1.02864 1.21440 0.91907 0.98498 1.00697 1.21488 1.01068 0.95812 0.96353 1.21818 1.02249 0.95780 1.01535 1.20290 0.90223 0.75800 0.81534 1.90694 1.65035 1.49903 1.36234 1.49899 1.07903 1.72518 1.05661 1.21776 0.95447 1.00109 0.83115 1.22632 0.95527 1.00410 0.96099 0.89357 1.21839 0.98093 1.00805 0.92991 1.23831 0.92994 1.02417 0.99273 1.20026 0.93345 0.87738 0.89689 0.91585 1.42796 1.18662 1.23632 1.53395 1.19090 0.91787 1.03900 1.22633 0.89048 1.24642 0.96497 0.97769 0.99915 1.69686 1.19370 1.21625 1.47354 0.86648 0.80587 0.79654 0.82203 1.20954 1.21686 1.20508 1.22104 0.97711 1.00438 0.94077 0.90987 1.20919 0.80055 1.02705 0.95389 0.92189 0.92543 0.92448 0.91661 0.91144 0.89358 0.91021 0.90640 0.92371 0.92905 0.92468 0.90673 0.90968 0.91755 0.91967 0.92335 0.90467 0.80589 0.93035 0.90914 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.11 -0.99 5.38 -26.73 -0.14 -1.13 16 3 C -0.10 -1.10 1.84 -91.77 -0.17 -1.27 16 4 C -0.11 -1.14 5.04 -26.73 -0.13 -1.27 16 5 C -0.16 -1.77 9.65 37.16 0.36 -1.41 16 6 C 0.53 7.86 6.02 -10.99 -0.07 7.79 16 7 O -0.54 -10.12 16.33 5.56 0.09 -10.03 16 8 N -0.62 -8.84 3.43 -171.47 -0.59 -9.43 16 9 C 0.12 1.29 6.55 -3.05 -0.02 1.27 16 10 C -0.13 -1.66 3.04 -89.45 -0.27 -1.93 16 11 H 0.09 1.36 7.87 -51.93 -0.41 0.95 16 12 C -0.10 -1.18 6.61 -25.66 -0.17 -1.35 16 13 C -0.14 -2.22 6.74 -23.28 -0.16 -2.38 16 14 C 0.20 3.62 3.47 -67.90 -0.24 3.38 16 15 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 16 N -0.74 -16.83 4.67 -53.40 -0.25 -17.07 16 17 C -0.24 -6.71 10.44 -15.06 -0.16 -6.87 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 21 Si 0.88 22.34 27.74 -169.99 -4.71 17.62 16 22 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 25 C -0.12 -1.83 2.26 -91.15 -0.21 -2.04 16 26 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 27 C 0.13 2.12 6.70 -4.04 -0.03 2.09 16 28 H 0.06 0.38 6.45 -51.93 -0.34 0.05 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.09 0.82 6.45 -51.93 -0.34 0.48 16 34 H 0.07 0.58 6.33 -51.93 -0.33 0.25 16 35 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 36 H 0.06 0.82 7.41 -51.93 -0.38 0.44 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.69 6.70 -51.93 -0.35 0.34 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 45 H 0.36 8.25 4.63 -40.82 -0.19 8.06 16 46 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 47 H 0.07 1.38 7.26 -51.93 -0.38 1.01 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -32.30 366.54 -8.89 -41.19 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -8.60 Total: 6.21 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.14 Total: -5.62 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.06 Total: -54.89 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.30 -8.89 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026201713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.663 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds