Wall clock time and date at job start Fri Apr 10 2020 20:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.53001 * 109.47198 * 239.99847 * 2 1 3 5 5 C 1.53007 * 109.46819 * 120.00076 * 2 1 3 6 6 C 1.50695 * 109.47315 * 60.00123 * 5 2 1 7 7 O 1.21287 * 120.00132 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00210 * 179.97438 * 6 5 2 9 9 C 1.46892 * 120.47131 * 179.97438 * 8 6 5 10 10 C 1.53338 * 108.75749 * 124.42926 * 9 8 6 11 11 C 1.52671 * 109.11612 * 52.41277 * 10 9 8 12 12 C 1.53506 * 113.56917 * 73.83948 * 11 10 9 13 13 N 1.47663 * 85.98278 * 91.01150 * 12 11 10 14 14 C 1.36932 * 134.45859 * 204.29890 * 13 12 11 15 15 H 1.08002 * 119.99876 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00272 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00023 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47312 * 90.00102 * 18 16 14 20 20 H 1.48503 * 109.47542 * 210.00032 * 18 16 14 21 21 H 1.48497 * 109.47608 * 330.00305 * 18 16 14 22 22 C 1.47666 * 91.08413 * 24.31134 * 13 12 11 23 23 C 1.52672 * 113.18779 * 302.42319 * 11 10 9 24 24 C 1.46879 * 120.46877 * 359.97438 * 8 6 5 25 25 H 1.09002 * 109.47589 * 299.99927 * 1 2 3 26 26 H 1.09005 * 109.46951 * 60.00279 * 1 2 3 27 27 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47256 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47312 * 299.99956 * 3 2 1 30 30 H 1.09005 * 109.47090 * 60.00000 * 3 2 1 31 31 H 1.09001 * 109.47475 * 300.00146 * 4 2 1 32 32 H 1.08994 * 109.46899 * 60.00303 * 4 2 1 33 33 H 1.08999 * 109.46798 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.46972 * 299.99587 * 5 2 1 35 35 H 1.09003 * 109.46706 * 180.02562 * 5 2 1 36 36 H 1.09001 * 109.58900 * 4.64303 * 9 8 6 37 37 H 1.08996 * 109.58981 * 244.20987 * 9 8 6 38 38 H 1.08997 * 109.52746 * 292.52773 * 10 9 8 39 39 H 1.08998 * 109.52699 * 172.30487 * 10 9 8 40 40 H 1.09002 * 113.79034 * 205.27539 * 12 11 10 41 41 H 1.09003 * 113.79222 * 336.73782 * 12 11 10 42 42 H 0.96999 * 120.00072 * 180.02562 * 17 16 14 43 43 H 1.08997 * 113.79047 * 221.41593 * 22 13 12 44 44 H 1.09001 * 113.78628 * 89.95328 * 22 13 12 45 45 H 1.08995 * 109.52934 * 177.46603 * 23 11 10 46 46 H 1.08997 * 109.52609 * 297.68306 * 23 11 10 47 47 H 1.09003 * 109.59384 * 355.35571 * 24 8 6 48 48 H 1.09006 * 109.58865 * 115.78983 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.5376 -2.1421 1.2493 7 8 0.8400 -2.5387 0.3399 8 7 1.8636 -2.9721 2.2598 9 6 1.3792 -4.3588 2.2705 10 6 2.5835 -5.3010 2.3853 11 6 3.4374 -4.8778 3.5781 12 6 2.8149 -5.2332 4.9355 13 7 3.5617 -6.5025 4.8287 14 6 3.4031 -7.7559 5.3567 15 1 2.5716 -7.9638 6.0139 16 6 4.3108 -8.7594 5.0473 17 7 5.3244 -8.5061 4.2468 18 14 4.0948 -10.4691 5.7682 19 1 3.2567 -11.2886 4.8563 20 1 5.4245 -11.1105 5.9284 21 1 3.4314 -10.3677 7.0928 22 6 4.5484 -5.8784 3.9246 23 6 3.9219 -3.4328 3.4880 24 6 2.7082 -2.5029 3.3661 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2493 32 1 1.6767 -0.2074 -2.1391 33 1 3.1300 -0.7216 -1.2489 34 1 1.6766 -0.2074 2.1392 35 1 3.1300 -0.7209 1.2495 36 1 0.8407 -4.5650 1.3455 37 1 0.7162 -4.5078 3.1227 38 1 3.1781 -5.2450 1.4735 39 1 2.2340 -6.3229 2.5317 40 1 3.1486 -4.5941 5.7531 41 1 1.7323 -5.3559 4.9041 42 1 5.9585 -9.2074 4.0303 43 1 4.8437 -6.5141 3.0898 44 1 5.3974 -5.4312 4.4417 45 1 4.4851 -3.1807 4.3865 46 1 4.5599 -3.3163 2.6120 47 1 3.0453 -1.4864 3.1629 48 1 2.1380 -2.5222 4.2949 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035652113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:12:34 Heat of formation + Delta-G solvation = 5.701863 kcal Electronic energy + Delta-G solvation = -25077.990989 eV Core-core repulsion = 21748.177985 eV Total energy + Delta-G solvation = -3329.813004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54312 -39.06957 -36.77310 -35.52588 -32.51379 -31.23358 -30.53580 -28.31649 -27.30767 -27.22507 -26.64870 -25.01517 -23.55024 -23.03200 -21.29825 -19.90127 -18.66114 -17.62773 -16.76434 -16.66836 -15.71111 -15.46858 -14.87640 -14.63924 -14.54730 -14.38727 -14.14758 -13.77325 -13.67819 -13.34481 -12.83943 -12.45570 -12.33683 -12.30432 -12.21797 -12.07363 -11.84274 -11.65658 -11.30415 -11.16559 -11.06930 -11.00537 -10.86306 -10.83937 -10.76018 -10.73418 -10.34685 -10.11717 -9.69582 -9.58926 -9.36365 -9.27879 -8.77518 -8.36177 -6.84483 -5.74917 -3.06589 2.71676 3.12750 3.39507 3.44474 3.46210 4.46800 4.50370 4.56039 4.71765 4.91959 5.02915 5.05854 5.23387 5.31268 5.34527 5.37278 5.40045 5.43594 5.49860 5.51932 5.57309 5.66593 5.71584 5.77729 5.81686 5.89192 5.92960 5.97749 6.01665 6.03154 6.13123 6.21380 6.29333 6.32445 6.42043 6.43610 6.53640 6.64822 6.67278 6.82587 6.90626 7.25122 7.39325 7.56502 7.60267 8.00767 8.31554 9.06929 9.73118 10.63452 11.42025 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.038621 B = 0.003201 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.828741 B = 8746.080883 C = 8872.639002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.153 4.153 5 C -0.132 4.132 6 C 0.514 3.486 7 O -0.540 6.540 8 N -0.606 5.606 9 C 0.113 3.887 10 C -0.096 4.096 11 C -0.108 4.108 12 C 0.126 3.874 13 N -0.609 5.609 14 C -0.221 4.221 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.909 3.091 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.173 3.827 23 C -0.119 4.119 24 C 0.109 3.891 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 19.003 -6.128 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.210 4.210 5 C -0.172 4.172 6 C 0.303 3.697 7 O -0.419 6.419 8 N -0.339 5.339 9 C -0.009 4.009 10 C -0.134 4.134 11 C -0.110 4.110 12 C 0.000 4.000 13 N -0.335 5.335 14 C -0.349 4.349 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.048 3.952 23 C -0.158 4.158 24 C -0.014 4.014 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.835 18.432 -6.531 20.407 hybrid contribution 0.251 -0.911 0.750 1.207 sum -5.583 17.520 -5.782 19.276 Atomic orbital electron populations 1.22102 0.94191 1.04160 1.00517 1.20272 0.96334 0.94337 0.94246 1.21899 1.00854 0.95455 1.01703 1.22103 0.99971 1.02985 0.95974 1.21808 1.02277 0.93001 1.00089 1.20620 0.80167 0.87643 0.81260 1.90544 1.38698 1.77284 1.35368 1.48188 1.50589 1.12369 1.22742 1.21675 0.96805 0.79768 1.02657 1.21475 0.95384 0.99496 0.97013 1.22383 0.99581 0.93418 0.95577 1.22587 0.95790 0.88290 0.93299 1.45946 1.27924 1.04221 1.55394 1.19005 1.08347 0.84312 1.23251 0.90441 1.24755 0.97272 0.98107 1.00310 1.69816 1.15569 1.32270 1.39173 0.86162 0.76842 0.84406 0.78591 1.21568 1.21707 1.20783 1.22233 0.90046 0.89530 0.93437 1.21835 0.96483 0.95252 1.02188 1.21794 0.92192 0.97849 0.89593 0.93718 0.93303 0.89656 0.92715 0.92522 0.92796 0.89631 0.93304 0.93596 0.89224 0.89045 0.89412 0.91653 0.92211 0.89591 0.95208 0.94209 0.93726 0.91027 0.95805 0.90744 0.91817 0.90296 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.18 37.16 0.30 -1.29 16 2 C -0.05 -0.50 0.77 -154.51 -0.12 -0.62 16 3 C -0.14 -1.09 8.47 37.16 0.31 -0.78 16 4 C -0.15 -1.66 8.18 37.16 0.30 -1.36 16 5 C -0.13 -1.27 3.10 -27.88 -0.09 -1.36 16 6 C 0.51 6.66 7.11 -10.99 -0.08 6.59 16 7 O -0.54 -8.42 10.74 5.55 0.06 -8.36 16 8 N -0.61 -7.89 2.94 -172.63 -0.51 -8.40 16 9 C 0.11 1.66 6.30 -3.65 -0.02 1.64 16 10 C -0.10 -1.63 5.21 -26.72 -0.14 -1.77 16 11 C -0.11 -1.89 0.77 -154.43 -0.12 -2.01 16 12 C 0.13 2.46 7.72 -3.15 -0.02 2.44 16 13 N -0.61 -15.22 3.53 -179.77 -0.64 -15.86 16 14 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 17 N -0.92 -27.18 11.39 55.49 0.63 -26.55 16 18 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.17 3.95 6.64 -3.16 -0.02 3.93 16 23 C -0.12 -1.60 5.26 -26.70 -0.14 -1.74 16 24 C 0.11 1.21 6.23 -3.64 -0.02 1.18 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.10 5.51 -51.93 -0.29 0.82 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 1.15 5.51 -51.93 -0.29 0.86 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 35 H 0.09 0.79 7.72 -51.93 -0.40 0.39 16 36 H 0.09 1.35 6.98 -51.93 -0.36 0.99 16 37 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.69 8.01 -51.93 -0.42 1.28 16 40 H 0.03 0.56 8.07 -51.93 -0.42 0.15 16 41 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 44 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.67 5.89 -51.93 -0.31 0.36 16 48 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 LS Contribution 360.93 15.07 5.44 5.44 Total: -1.00 -30.99 360.93 -8.79 -39.77 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.64 Total: -1.40 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.11 Total: -1.78 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.51 Total: -50.80 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.06 Total: -8.36 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.99 -8.79 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035652113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.476 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds