Wall clock time and date at job start Fri Apr 10 2020 20:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47397 * 2 1 4 4 C 1.52998 * 109.47397 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47251 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47335 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99712 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99761 * 180.02562 * 6 5 4 9 9 C 1.47189 * 126.70879 * 0.02562 * 8 6 5 10 10 C 1.53742 * 106.43104 * 211.33634 * 9 8 6 11 11 H 1.08995 * 112.29120 * 104.36095 * 10 9 8 12 12 C 1.54454 * 109.01147 * 229.45528 * 10 9 8 13 13 N 1.48338 * 104.32346 * 137.92076 * 12 10 9 14 14 C 1.36938 * 128.19234 * 138.17120 * 13 12 10 15 15 H 1.08001 * 120.00431 * 338.75077 * 14 13 12 16 16 C 1.38810 * 119.99806 * 158.75916 * 14 13 12 17 17 N 1.31624 * 120.00078 * 336.53644 * 16 14 13 18 18 Si 1.86798 * 120.00473 * 156.26205 * 16 14 13 19 19 H 1.48505 * 109.46727 * 59.99912 * 18 16 14 20 20 H 1.48497 * 109.47650 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47221 * 300.00214 * 18 16 14 22 22 C 1.48328 * 103.60426 * 318.43532 * 13 12 10 23 23 C 1.54066 * 104.51900 * 41.53115 * 22 13 12 24 24 C 1.52997 * 112.57948 * 97.43599 * 23 22 13 25 25 C 1.47202 * 126.69790 * 179.97438 * 8 6 5 26 26 H 1.08996 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46832 * 299.99625 * 1 2 3 28 28 H 1.08997 * 109.46849 * 59.99951 * 1 2 3 29 29 H 1.09007 * 109.47109 * 240.00063 * 2 1 3 30 30 H 1.09002 * 109.47153 * 120.00412 * 2 1 3 31 31 H 1.09000 * 109.46824 * 60.00369 * 3 2 1 32 32 H 1.08999 * 109.46869 * 300.00576 * 3 2 1 33 33 H 1.09007 * 109.47109 * 60.00063 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00412 * 4 3 2 35 35 H 1.09007 * 109.47094 * 59.99955 * 5 4 3 36 36 H 1.09002 * 109.47298 * 300.00225 * 5 4 3 37 37 H 1.09000 * 110.06641 * 92.09370 * 9 8 6 38 38 H 1.09004 * 110.06550 * 330.57557 * 9 8 6 39 39 H 1.08997 * 110.46249 * 19.21741 * 12 10 9 40 40 H 1.08994 * 110.57456 * 256.68532 * 12 10 9 41 41 H 0.97001 * 119.99695 * 353.98332 * 17 16 14 42 42 H 1.09008 * 110.46104 * 160.27837 * 22 13 12 43 43 H 1.08998 * 110.46007 * 282.85137 * 22 13 12 44 44 H 1.09004 * 109.47411 * 302.11404 * 24 23 22 45 45 H 1.09004 * 109.46951 * 62.10952 * 24 23 22 46 46 H 1.08997 * 109.47497 * 182.11154 * 24 23 22 47 47 H 1.09006 * 110.05976 * 267.90460 * 25 8 6 48 48 H 1.08997 * 110.07024 * 29.36505 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.5871 2.8849 -0.0013 7 8 6.1934 1.8346 -0.0021 8 7 6.2609 4.0521 -0.0004 9 6 5.6788 5.4041 0.0022 10 6 6.6627 6.3027 -0.7647 11 1 6.3093 6.5410 -1.7678 12 6 6.9454 7.5690 0.0733 13 7 8.4071 7.7813 -0.0643 14 6 9.0773 8.9603 -0.2538 15 1 8.5585 9.8178 -0.6564 16 6 10.4236 9.0534 0.0713 17 7 10.9459 8.2288 0.9543 18 14 11.4959 10.3437 -0.7500 19 1 10.9602 11.6960 -0.4506 20 1 12.8838 10.2360 -0.2332 21 1 11.4958 10.1254 -2.2189 22 6 8.9702 6.4134 0.0456 23 6 8.0113 5.5336 -0.7791 24 6 8.5223 5.2784 -2.1985 25 6 7.7228 4.2239 -0.0009 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 3.7171 3.3983 0.8905 36 1 3.7163 3.3993 -0.8895 37 1 5.5665 5.7609 1.0260 38 1 4.7112 5.3956 -0.4996 39 1 6.6814 7.4018 1.1175 40 1 6.3973 8.4225 -0.3256 41 1 10.3746 7.6149 1.4419 42 1 9.9746 6.3798 -0.3766 43 1 8.9821 6.0887 1.0860 44 1 8.6725 6.2306 -2.7073 45 1 9.4677 4.7379 -2.1525 46 1 7.7907 4.6849 -2.7468 47 1 8.0903 4.3037 1.0222 48 1 8.1982 3.3819 -0.5040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101127708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:04 Heat of formation + Delta-G solvation = -36.045734 kcal Electronic energy + Delta-G solvation = -24345.462584 eV Core-core repulsion = 21013.839268 eV Total energy + Delta-G solvation = -3331.623316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.34787 -38.60514 -36.18581 -35.17368 -32.85619 -32.29026 -31.38354 -29.49779 -27.95425 -26.39758 -25.43413 -25.14310 -22.87363 -22.01888 -21.20117 -20.60055 -19.12135 -18.43967 -17.37631 -16.80666 -16.34921 -15.57937 -15.37784 -14.71086 -14.42950 -14.17150 -13.90752 -13.64771 -13.52584 -13.40899 -13.39337 -12.88729 -12.66919 -12.40330 -12.19943 -11.99834 -11.81268 -11.75514 -11.24379 -11.21865 -11.15359 -11.08488 -11.04405 -10.74476 -10.73943 -10.48967 -10.25385 -10.17812 -10.10457 -9.97598 -9.70028 -9.41500 -8.58133 -8.49452 -7.03214 -6.15622 -3.23232 2.70670 3.08871 3.46626 3.50222 3.68244 4.38720 4.52307 4.56960 4.65134 4.77492 4.78824 4.93590 4.95825 5.08398 5.12503 5.30072 5.32666 5.34907 5.40419 5.48071 5.49510 5.52178 5.54613 5.62275 5.66815 5.75181 5.79061 5.81748 5.89601 5.95174 5.98873 6.07399 6.12381 6.14623 6.17555 6.22820 6.37151 6.52240 6.52864 6.60654 6.78797 6.86944 6.99645 7.68012 7.68902 8.24656 8.39850 8.92586 9.73875 10.37586 11.19765 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.041484 B = 0.002799 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.795466 B = 9999.529743 C =10253.896907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.104 4.104 5 C -0.136 4.136 6 C 0.527 3.473 7 O -0.549 6.549 8 N -0.615 5.615 9 C 0.107 3.893 10 C -0.109 4.109 11 H 0.085 0.915 12 C 0.131 3.869 13 N -0.597 5.597 14 C -0.328 4.328 15 H 0.064 0.936 16 C -0.026 4.026 17 N -0.918 5.918 18 Si 1.068 2.932 19 H -0.293 1.293 20 H -0.285 1.285 21 H -0.293 1.293 22 C 0.148 3.852 23 C -0.086 4.086 24 C -0.119 4.119 25 C 0.115 3.885 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.050 0.950 41 H 0.268 0.732 42 H 0.068 0.932 43 H 0.027 0.973 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.069 0.931 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.332 -11.042 -3.010 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.142 4.142 5 C -0.175 4.175 6 C 0.316 3.684 7 O -0.427 6.427 8 N -0.348 5.348 9 C -0.016 4.016 10 C -0.130 4.130 11 H 0.104 0.896 12 C 0.005 3.995 13 N -0.321 5.321 14 C -0.456 4.456 15 H 0.082 0.918 16 C -0.228 4.228 17 N -0.558 5.558 18 Si 0.898 3.102 19 H -0.220 1.220 20 H -0.210 1.210 21 H -0.220 1.220 22 C 0.022 3.978 23 C -0.089 4.089 24 C -0.176 4.176 25 C -0.008 4.008 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.415 -10.954 -3.145 19.170 hybrid contribution -1.674 -0.383 0.220 1.731 sum -17.089 -11.338 -2.926 20.716 Atomic orbital electron populations 1.21780 0.95987 1.01503 1.01749 1.21527 0.95663 0.96932 1.02204 1.21641 0.95178 0.96919 1.02054 1.21359 0.94552 0.94737 1.03574 1.21666 0.91774 0.99902 1.04207 1.20380 0.89954 0.82109 0.75970 1.90686 1.70597 1.30601 1.50831 1.48666 1.08004 1.05721 1.72443 1.22273 0.97053 0.81575 1.00711 1.23074 0.93971 0.96348 0.99620 0.89635 1.21853 0.88147 0.94002 0.95544 1.45131 1.00267 1.01878 1.84831 1.19714 0.95543 0.89386 1.40934 0.91793 1.25858 0.96126 1.03123 0.97664 1.70776 1.39397 1.24302 1.21341 0.83469 0.76385 0.74686 0.75671 1.21967 1.21013 1.22017 1.21736 0.96217 0.84551 0.95312 1.22550 0.96498 0.93458 0.96376 1.21551 0.99938 1.01633 0.94465 1.22420 0.80061 0.97960 1.00369 0.92883 0.92794 0.92795 0.91978 0.91970 0.91948 0.91970 0.91263 0.91254 0.89078 0.89103 0.91047 0.91035 0.95685 0.93098 0.92110 0.91382 0.95525 0.91665 0.92755 0.93642 0.91272 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -0.92 5.21 -26.73 -0.14 -1.06 16 4 C -0.10 -1.03 4.50 -26.74 -0.12 -1.15 16 5 C -0.14 -1.39 4.68 -27.89 -0.13 -1.52 16 6 C 0.53 7.73 7.88 -10.99 -0.09 7.64 16 7 O -0.55 -10.01 16.21 5.56 0.09 -9.92 16 8 N -0.62 -9.12 3.32 -170.83 -0.57 -9.69 16 9 C 0.11 1.41 6.38 -3.28 -0.02 1.39 16 10 C -0.11 -1.75 3.71 -88.28 -0.33 -2.08 16 11 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 12 C 0.13 2.54 6.76 -2.27 -0.02 2.52 16 13 N -0.60 -14.50 3.22 -168.71 -0.54 -15.05 16 14 C -0.33 -8.98 10.22 -15.06 -0.15 -9.13 16 15 H 0.06 1.74 7.93 -52.49 -0.42 1.32 16 16 C -0.03 -0.73 5.14 -17.43 -0.09 -0.82 16 17 N -0.92 -27.31 12.77 55.49 0.71 -26.60 16 18 Si 1.07 24.91 29.98 -169.99 -5.10 19.82 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.29 4.33 -2.48 -0.01 3.28 16 23 C -0.09 -1.52 1.10 -151.68 -0.17 -1.68 16 24 C -0.12 -1.97 8.64 37.16 0.32 -1.65 16 25 C 0.11 1.90 6.26 -2.57 -0.02 1.89 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.79 7.86 -51.93 -0.41 0.38 16 37 H 0.07 0.93 7.11 -51.93 -0.37 0.56 16 38 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 39 H 0.03 0.49 7.18 -51.93 -0.37 0.11 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.27 7.99 6.44 -40.82 -0.26 7.73 16 42 H 0.07 1.69 7.15 -51.92 -0.37 1.32 16 43 H 0.03 0.62 6.82 -51.93 -0.35 0.26 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 1.19 7.15 -51.93 -0.37 0.82 16 48 H 0.07 1.27 7.65 -51.93 -0.40 0.88 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -31.64 371.91 -9.37 -41.02 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.82 Total: -1.13 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.75 Total: -4.05 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.40 Total: -51.34 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.10 Total: 19.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.64 -9.37 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101127708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.972 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds