Wall clock time and date at job start Fri Apr 10 2020 20:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47397 * 2 1 4 4 C 1.52998 * 109.47397 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47251 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47335 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99712 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99761 * 180.02562 * 6 5 4 9 9 C 1.47189 * 126.70879 * 0.02562 * 8 6 5 10 10 C 1.53742 * 106.43104 * 211.33634 * 9 8 6 11 11 H 1.08995 * 112.29120 * 104.36095 * 10 9 8 12 12 C 1.54454 * 109.01147 * 229.45528 * 10 9 8 13 13 N 1.48338 * 104.32346 * 137.92076 * 12 10 9 14 14 C 1.36938 * 128.19234 * 138.17120 * 13 12 10 15 15 H 1.08001 * 120.00431 * 338.75077 * 14 13 12 16 16 C 1.38810 * 119.99806 * 158.75916 * 14 13 12 17 17 N 1.31624 * 120.00078 * 336.53644 * 16 14 13 18 18 Si 1.86798 * 120.00473 * 156.26205 * 16 14 13 19 19 H 1.48505 * 109.46727 * 59.99912 * 18 16 14 20 20 H 1.48497 * 109.47650 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47221 * 300.00214 * 18 16 14 22 22 C 1.48328 * 103.60426 * 318.43532 * 13 12 10 23 23 C 1.54066 * 104.51900 * 41.53115 * 22 13 12 24 24 C 1.52997 * 112.57948 * 97.43599 * 23 22 13 25 25 C 1.47202 * 126.69790 * 179.97438 * 8 6 5 26 26 H 1.08996 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46832 * 299.99625 * 1 2 3 28 28 H 1.08997 * 109.46849 * 59.99951 * 1 2 3 29 29 H 1.09007 * 109.47109 * 240.00063 * 2 1 3 30 30 H 1.09002 * 109.47153 * 120.00412 * 2 1 3 31 31 H 1.09000 * 109.46824 * 60.00369 * 3 2 1 32 32 H 1.08999 * 109.46869 * 300.00576 * 3 2 1 33 33 H 1.09007 * 109.47109 * 60.00063 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00412 * 4 3 2 35 35 H 1.09007 * 109.47094 * 59.99955 * 5 4 3 36 36 H 1.09002 * 109.47298 * 300.00225 * 5 4 3 37 37 H 1.09000 * 110.06641 * 92.09370 * 9 8 6 38 38 H 1.09004 * 110.06550 * 330.57557 * 9 8 6 39 39 H 1.08997 * 110.46249 * 19.21741 * 12 10 9 40 40 H 1.08994 * 110.57456 * 256.68532 * 12 10 9 41 41 H 0.97001 * 119.99695 * 353.98332 * 17 16 14 42 42 H 1.09008 * 110.46104 * 160.27837 * 22 13 12 43 43 H 1.08998 * 110.46007 * 282.85137 * 22 13 12 44 44 H 1.09004 * 109.47411 * 302.11404 * 24 23 22 45 45 H 1.09004 * 109.46951 * 62.10952 * 24 23 22 46 46 H 1.08997 * 109.47497 * 182.11154 * 24 23 22 47 47 H 1.09006 * 110.05976 * 267.90460 * 25 8 6 48 48 H 1.08997 * 110.07024 * 29.36505 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.5871 2.8849 -0.0013 7 8 6.1934 1.8346 -0.0021 8 7 6.2609 4.0521 -0.0004 9 6 5.6788 5.4041 0.0022 10 6 6.6627 6.3027 -0.7647 11 1 6.3093 6.5410 -1.7678 12 6 6.9454 7.5690 0.0733 13 7 8.4071 7.7813 -0.0643 14 6 9.0773 8.9603 -0.2538 15 1 8.5585 9.8178 -0.6564 16 6 10.4236 9.0534 0.0713 17 7 10.9459 8.2288 0.9543 18 14 11.4959 10.3437 -0.7500 19 1 10.9602 11.6960 -0.4506 20 1 12.8838 10.2360 -0.2332 21 1 11.4958 10.1254 -2.2189 22 6 8.9702 6.4134 0.0456 23 6 8.0113 5.5336 -0.7791 24 6 8.5223 5.2784 -2.1985 25 6 7.7228 4.2239 -0.0009 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 3.7171 3.3983 0.8905 36 1 3.7163 3.3993 -0.8895 37 1 5.5665 5.7609 1.0260 38 1 4.7112 5.3956 -0.4996 39 1 6.6814 7.4018 1.1175 40 1 6.3973 8.4225 -0.3256 41 1 10.3746 7.6149 1.4419 42 1 9.9746 6.3798 -0.3766 43 1 8.9821 6.0887 1.0860 44 1 8.6725 6.2306 -2.7073 45 1 9.4677 4.7379 -2.1525 46 1 7.7907 4.6849 -2.7468 47 1 8.0903 4.3037 1.0222 48 1 8.1982 3.3819 -0.5040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101127708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:03 Heat of formation + Delta-G solvation = -53.665388 kcal Electronic energy + Delta-G solvation = -24346.226629 eV Core-core repulsion = 21013.839268 eV Total energy + Delta-G solvation = -3332.387361 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65235 -39.92133 -36.97343 -36.66671 -34.46943 -33.29812 -32.75993 -31.09330 -28.88327 -27.99922 -26.76092 -26.65506 -24.19265 -22.99702 -22.27390 -21.81548 -20.39985 -19.79706 -19.27677 -17.99479 -17.26785 -16.66812 -16.44590 -16.26602 -15.91016 -15.53382 -15.36143 -15.20499 -14.64792 -14.48644 -14.16737 -14.05956 -14.00324 -13.74133 -13.32353 -13.20201 -12.89064 -12.75256 -12.65545 -12.56722 -12.49933 -12.23427 -11.92227 -11.89383 -11.82242 -11.75098 -11.68487 -11.60747 -11.51283 -11.42254 -11.35710 -10.83940 -10.57554 -9.77088 -9.03934 -8.33389 -5.36823 1.57553 1.58910 1.65818 1.83936 1.94656 2.63913 3.18790 3.27135 3.37738 3.63980 3.81640 3.84690 3.87219 4.03122 4.08601 4.17471 4.23404 4.29558 4.32379 4.40737 4.45189 4.55357 4.64320 4.67675 4.71406 4.75565 4.82628 4.85386 4.87829 4.90557 4.95759 4.98922 5.04530 5.07203 5.12482 5.17531 5.22601 5.25211 5.32012 5.38630 5.40143 5.46429 5.54522 5.66953 6.28739 6.54554 6.83718 7.10550 7.66556 8.36216 9.02124 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.041484 B = 0.002799 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.795466 B = 9999.529743 C =10253.896907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.101 4.101 5 C -0.126 4.126 6 C 0.522 3.478 7 O -0.592 6.592 8 N -0.615 5.615 9 C 0.113 3.887 10 C -0.097 4.097 11 H 0.103 0.897 12 C 0.128 3.872 13 N -0.624 5.624 14 C -0.329 4.329 15 H 0.064 0.936 16 C -0.083 4.083 17 N -0.951 5.951 18 Si 1.118 2.882 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.279 1.279 22 C 0.157 3.843 23 C -0.079 4.079 24 C -0.112 4.112 25 C 0.120 3.880 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.028 0.972 40 H 0.058 0.942 41 H 0.252 0.748 42 H 0.030 0.970 43 H 0.009 0.991 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.415 -10.677 -4.205 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.166 4.166 6 C 0.314 3.686 7 O -0.473 6.473 8 N -0.347 5.347 9 C -0.009 4.009 10 C -0.118 4.118 11 H 0.121 0.879 12 C 0.003 3.997 13 N -0.349 5.349 14 C -0.458 4.458 15 H 0.082 0.918 16 C -0.278 4.278 17 N -0.593 5.593 18 Si 0.942 3.058 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.205 1.205 22 C 0.030 3.970 23 C -0.081 4.081 24 C -0.170 4.170 25 C -0.004 4.004 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.563 -10.584 -4.349 21.807 hybrid contribution -0.745 -0.531 0.630 1.111 sum -19.309 -11.116 -3.719 22.588 Atomic orbital electron populations 1.21765 0.95055 1.01861 1.02165 1.21549 0.96480 0.96907 1.01728 1.21589 0.93187 0.97162 1.03093 1.21320 0.96186 0.94447 1.02010 1.21741 0.87818 1.00474 1.06542 1.21278 0.91736 0.81096 0.74539 1.90674 1.71837 1.32108 1.52632 1.48720 1.06897 1.06736 1.72372 1.22333 0.97776 0.79665 1.01156 1.22990 0.93601 0.94860 1.00314 0.87885 1.22054 0.85195 0.96040 0.96426 1.45405 1.02621 1.01730 1.85122 1.19996 0.95939 0.90475 1.39370 0.91804 1.27221 0.98018 1.04684 0.97898 1.70895 1.39222 1.25865 1.23361 0.82817 0.74232 0.73452 0.75321 1.19794 1.22127 1.20542 1.21572 0.95522 0.85014 0.94855 1.22387 0.96317 0.93308 0.96131 1.21488 1.00566 1.01131 0.93770 1.22157 0.81959 0.96968 0.99276 0.92656 0.92402 0.92307 0.92467 0.92585 0.90935 0.90763 0.92813 0.93038 0.86718 0.86347 0.90510 0.86573 0.95378 0.92359 0.93758 0.95181 0.97335 0.93156 0.93093 0.91239 0.92658 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.13 -1.66 5.93 30.59 0.18 -1.48 16 3 C -0.11 -1.38 5.21 30.59 0.16 -1.22 16 4 C -0.10 -1.79 4.50 30.59 0.14 -1.65 16 5 C -0.13 -2.09 4.68 29.85 0.14 -1.96 16 6 C 0.52 14.13 7.88 87.66 0.69 14.82 16 7 O -0.59 -21.21 16.21 -3.04 -0.05 -21.26 16 8 N -0.61 -16.73 3.32 -812.78 -2.70 -19.43 16 9 C 0.11 2.52 6.38 86.50 0.55 3.07 16 10 C -0.10 -2.85 3.71 -9.28 -0.03 -2.89 16 11 H 0.10 2.74 7.93 -2.39 -0.02 2.72 16 12 C 0.13 4.78 6.76 86.52 0.58 5.36 16 13 N -0.62 -30.66 3.22 -687.68 -2.21 -32.87 16 14 C -0.33 -18.21 10.22 84.03 0.86 -17.35 16 15 H 0.06 3.46 7.93 -2.91 -0.02 3.43 16 16 C -0.08 -4.73 5.14 84.86 0.44 -4.29 16 17 N -0.95 -58.75 12.77 21.65 0.28 -58.48 16 18 Si 1.12 50.80 29.98 68.60 2.06 52.86 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.16 7.21 4.33 86.39 0.37 7.58 16 23 C -0.08 -2.74 1.10 -50.35 -0.06 -2.79 16 24 C -0.11 -3.65 8.64 71.98 0.62 -3.03 16 25 C 0.12 3.95 6.26 86.95 0.54 4.49 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 34 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.12 1.39 7.86 -2.39 -0.02 1.37 16 37 H 0.08 1.70 7.11 -2.39 -0.02 1.68 16 38 H 0.12 1.66 7.31 -2.38 -0.02 1.64 16 39 H 0.03 1.04 7.18 -2.39 -0.02 1.03 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.25 15.87 6.44 -92.71 -0.60 15.28 16 42 H 0.03 1.58 7.15 -2.38 -0.02 1.56 16 43 H 0.01 0.43 6.82 -2.39 -0.02 0.42 16 44 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 1.96 7.15 -2.38 -0.02 1.94 16 48 H 0.07 2.32 7.65 -2.39 -0.02 2.30 16 Total: -1.00 -71.79 371.91 4.35 -67.44 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.07 Total: 13.93 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.91 Total: -2.20 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -4.63 Total: -110.77 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.06 Total: 52.86 kcal Total: -71.79 4.35 -67.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101127708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.779 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds