Wall clock time and date at job start Fri Apr 10 2020 20:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 C 1.53002 * 109.47025 * 119.99394 * 2 1 3 5 5 C 1.53002 * 109.46829 * 175.00498 * 4 2 1 6 6 H 1.08994 * 115.56776 * 29.31341 * 5 4 2 7 7 C 1.53007 * 117.49690 * 243.62121 * 5 4 2 8 8 C 1.53001 * 60.00098 * 252.51425 * 7 5 4 9 9 H 1.08997 * 117.49580 * 107.51305 * 8 7 5 10 10 C 1.50698 * 117.49739 * 252.51290 * 8 7 5 11 11 O 1.21274 * 120.00423 * 68.60416 * 10 8 7 12 12 N 1.34783 * 119.99922 * 248.61034 * 10 8 7 13 13 C 1.46928 * 120.62874 * 0.02562 * 12 10 8 14 14 C 1.53191 * 108.77343 * 126.37163 * 13 12 10 15 15 C 1.53039 * 109.31416 * 54.63452 * 14 13 12 16 16 C 1.53070 * 109.65812 * 298.69913 * 15 14 13 17 17 H 1.08997 * 109.38860 * 301.27396 * 16 15 14 18 18 N 1.46498 * 109.62217 * 181.16721 * 16 15 14 19 19 C 1.36936 * 119.99993 * 85.10793 * 18 16 15 20 20 H 1.07997 * 119.99979 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00011 * 180.02562 * 19 18 16 22 22 N 1.31615 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46882 * 89.99662 * 23 21 19 25 25 H 1.48492 * 109.47245 * 210.00037 * 23 21 19 26 26 H 1.48500 * 109.47169 * 330.00130 * 23 21 19 27 27 C 1.46919 * 120.63144 * 179.97438 * 12 10 8 28 28 H 1.08994 * 109.47355 * 300.00482 * 1 2 3 29 29 H 1.09006 * 109.46887 * 60.00694 * 1 2 3 30 30 H 1.09003 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47453 * 240.00021 * 2 1 3 32 32 H 1.09004 * 109.47207 * 299.99659 * 3 2 1 33 33 H 1.08994 * 109.47494 * 59.99603 * 3 2 1 34 34 H 1.09002 * 109.47227 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46834 * 55.00991 * 4 2 1 36 36 H 1.08992 * 109.47099 * 295.00283 * 4 2 1 37 37 H 1.08992 * 117.49804 * 145.01988 * 7 5 4 38 38 H 1.09004 * 117.51624 * 359.97438 * 7 5 4 39 39 H 1.08998 * 109.58787 * 246.16207 * 13 12 10 40 40 H 1.09007 * 109.58600 * 6.44520 * 13 12 10 41 41 H 1.09002 * 109.49529 * 174.58688 * 14 13 12 42 42 H 1.09001 * 109.49774 * 294.68244 * 14 13 12 43 43 H 1.09007 * 109.45640 * 58.65727 * 15 14 13 44 44 H 1.09000 * 109.45893 * 178.62518 * 15 14 13 45 45 H 0.97005 * 120.00342 * 265.10679 * 18 16 15 46 46 H 0.97004 * 119.99948 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.58751 * 353.41659 * 27 12 10 48 48 H 1.08996 * 109.58750 * 113.69843 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8308 1.1881 6 1 4.0721 -0.0354 0.6423 7 6 4.1698 -2.2343 1.1156 8 6 4.2802 -1.4194 2.4058 9 1 3.6648 -1.7287 3.2506 10 6 5.6322 -0.8548 2.7587 11 8 6.1132 0.0323 2.0862 12 7 6.3068 -1.3360 3.8216 13 6 5.7375 -2.4111 4.6455 14 6 6.7557 -3.5518 4.7399 15 6 8.0864 -3.0010 5.2574 16 6 8.6246 -1.9527 4.2803 17 1 8.7566 -2.4073 3.2985 18 7 9.9120 -1.4461 4.7623 19 6 11.0671 -2.1192 4.4656 20 1 11.0290 -3.0236 3.8767 21 6 12.2868 -1.6394 4.9227 22 7 12.3332 -0.5374 5.6409 23 14 13.8625 -2.5579 4.5186 24 1 14.4208 -2.0449 3.2417 25 1 14.8493 -2.3515 5.6088 26 1 13.5697 -4.0075 4.3839 27 6 7.6260 -0.7962 4.1778 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6055 -1.7197 1.2952 36 1 1.7516 -0.1582 2.1369 37 1 5.0749 -2.3621 0.5220 38 1 3.4817 -3.0797 1.1120 39 1 5.5211 -2.0309 5.6438 40 1 4.8186 -2.7758 4.1863 41 1 6.3858 -4.3137 5.4260 42 1 6.9027 -3.9907 3.7530 43 1 7.9337 -2.5402 6.2334 44 1 8.8055 -3.8150 5.3486 45 1 9.9462 -0.6339 5.2916 46 1 13.1856 -0.2020 5.9600 47 1 7.9546 -0.0971 3.4088 48 1 7.5636 -0.2818 5.1367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000239708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:51 Heat of formation + Delta-G solvation = -22.289789 kcal Electronic energy + Delta-G solvation = -24000.944218 eV Core-core repulsion = 20669.917405 eV Total energy + Delta-G solvation = -3331.026813 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26574 -38.24963 -36.99686 -35.14524 -34.44178 -32.14561 -31.23435 -28.65321 -27.73864 -27.38000 -25.54556 -24.20379 -22.90951 -22.03280 -21.50619 -20.07174 -19.86335 -18.58367 -17.30488 -17.17442 -15.88792 -15.48227 -15.10465 -14.80645 -14.44059 -14.32508 -14.02570 -13.93835 -13.50124 -13.42439 -13.12427 -12.95353 -12.79790 -12.56188 -12.38340 -12.26726 -12.13736 -11.86394 -11.28761 -11.14963 -11.01849 -10.92858 -10.90323 -10.81721 -10.65043 -10.40184 -10.36507 -10.32054 -10.07994 -10.07603 -9.73262 -9.51825 -8.90952 -8.36386 -6.98632 -5.77511 -3.07085 2.61772 3.09359 3.43698 3.48754 3.50164 3.74013 4.29441 4.53950 4.58648 4.60454 4.71450 4.80943 4.86375 4.97907 5.07783 5.18156 5.18810 5.30620 5.36390 5.45036 5.50794 5.51911 5.53969 5.58528 5.59166 5.64797 5.72887 5.75927 5.77203 5.81405 5.86622 5.92101 6.01397 6.06793 6.14136 6.17421 6.24876 6.27878 6.40655 6.56293 6.73747 6.89505 7.05465 7.62833 7.69415 8.36735 8.41112 9.51593 10.07067 10.42213 11.45007 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.002794 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.379801 B =10020.150679 C =10419.659071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.084 4.084 5 C -0.120 4.120 6 H 0.120 0.880 7 C -0.149 4.149 8 C -0.188 4.188 9 H 0.122 0.878 10 C 0.541 3.459 11 O -0.543 6.543 12 N -0.602 5.602 13 C 0.108 3.892 14 C -0.132 4.132 15 C -0.138 4.138 16 C 0.169 3.831 17 H 0.049 0.951 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.106 3.894 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.092 0.908 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.744 -3.331 -6.705 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.122 4.122 5 C -0.139 4.139 6 H 0.138 0.862 7 C -0.186 4.186 8 C -0.209 4.209 9 H 0.140 0.860 10 C 0.329 3.671 11 O -0.421 6.421 12 N -0.334 5.334 13 C -0.015 4.015 14 C -0.171 4.171 15 C -0.178 4.178 16 C 0.058 3.942 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.017 4.017 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.110 0.890 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.317 -2.950 -7.103 25.504 hybrid contribution 1.025 -0.367 0.289 1.126 sum -23.292 -3.318 -6.814 24.494 Atomic orbital electron populations 1.21846 0.95340 1.01555 1.01741 1.21070 0.95342 0.96568 0.98285 1.21916 1.01780 0.95672 1.01503 1.21275 0.92090 1.00577 0.98230 1.22518 0.94919 0.97465 0.98977 0.86190 1.23089 1.03383 0.94819 0.97318 1.22310 0.96797 1.07536 0.94285 0.86046 1.19624 0.85541 0.82111 0.79831 1.90684 1.69435 1.30902 1.51091 1.48018 1.19482 1.37320 1.28598 1.21777 0.96609 0.87906 0.95166 1.21922 0.96514 0.96947 1.01743 1.22287 0.94868 1.00521 1.00153 1.20451 0.85998 0.91820 0.95905 0.93308 1.42310 1.00214 1.30317 1.63366 1.19202 0.84769 1.05541 1.27433 0.91177 1.24754 0.97688 0.97813 1.00630 1.69662 1.24895 1.22787 1.40647 0.86183 0.83548 0.78990 0.77421 1.21668 1.21761 1.20773 1.21978 0.80963 0.97466 1.01266 0.92730 0.92748 0.92808 0.91032 0.92945 0.92748 0.91976 0.91681 0.91414 0.88287 0.87971 0.91576 0.90109 0.91394 0.91855 0.92509 0.91592 0.78194 0.93460 0.88999 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.09 -0.70 2.92 -90.62 -0.26 -0.96 16 3 C -0.15 -1.23 9.01 37.16 0.33 -0.90 16 4 C -0.08 -0.65 4.96 -26.73 -0.13 -0.79 16 5 C -0.12 -1.22 5.04 -90.61 -0.46 -1.67 16 6 H 0.12 1.46 5.91 -51.93 -0.31 1.16 16 7 C -0.15 -1.43 9.88 -26.73 -0.26 -1.69 16 8 C -0.19 -2.08 4.69 -91.77 -0.43 -2.51 16 9 H 0.12 1.07 6.81 -51.93 -0.35 0.72 16 10 C 0.54 8.44 7.48 -10.98 -0.08 8.36 16 11 O -0.54 -10.63 15.67 5.56 0.09 -10.55 16 12 N -0.60 -9.15 2.98 -172.80 -0.51 -9.66 16 13 C 0.11 1.27 6.30 -3.71 -0.02 1.25 16 14 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 15 C -0.14 -2.37 5.47 -26.67 -0.15 -2.52 16 16 C 0.17 3.43 2.92 -67.82 -0.20 3.23 16 17 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 18 N -0.72 -18.22 5.13 -53.32 -0.27 -18.49 16 19 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.11 1.94 5.90 -3.74 -0.02 1.92 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.59 6.41 -51.93 -0.33 0.25 16 35 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 0.74 8.03 -51.93 -0.42 0.33 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.73 5.67 -51.92 -0.29 0.44 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.09 1.91 7.01 -51.93 -0.36 1.55 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -31.94 376.69 -9.75 -41.69 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.68 Total: 7.35 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.75 Total: -5.98 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.06 Total: -55.72 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.94 -9.75 -41.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000239708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.402 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds