Wall clock time and date at job start Fri Apr 10 2020 20:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 C 1.53002 * 109.47025 * 119.99394 * 2 1 3 5 5 C 1.53002 * 109.46829 * 175.00498 * 4 2 1 6 6 H 1.08994 * 115.56776 * 29.31341 * 5 4 2 7 7 C 1.53007 * 117.49690 * 243.62121 * 5 4 2 8 8 C 1.53001 * 60.00098 * 252.51425 * 7 5 4 9 9 H 1.08997 * 117.49580 * 107.51305 * 8 7 5 10 10 C 1.50698 * 117.49739 * 252.51290 * 8 7 5 11 11 O 1.21274 * 120.00423 * 68.60416 * 10 8 7 12 12 N 1.34783 * 119.99922 * 248.61034 * 10 8 7 13 13 C 1.46928 * 120.62874 * 0.02562 * 12 10 8 14 14 C 1.53191 * 108.77343 * 126.37163 * 13 12 10 15 15 C 1.53039 * 109.31416 * 54.63452 * 14 13 12 16 16 C 1.53070 * 109.65812 * 298.69913 * 15 14 13 17 17 H 1.08997 * 109.38860 * 301.27396 * 16 15 14 18 18 N 1.46498 * 109.62217 * 181.16721 * 16 15 14 19 19 C 1.36936 * 119.99993 * 85.10793 * 18 16 15 20 20 H 1.07997 * 119.99979 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00011 * 180.02562 * 19 18 16 22 22 N 1.31615 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46882 * 89.99662 * 23 21 19 25 25 H 1.48492 * 109.47245 * 210.00037 * 23 21 19 26 26 H 1.48500 * 109.47169 * 330.00130 * 23 21 19 27 27 C 1.46919 * 120.63144 * 179.97438 * 12 10 8 28 28 H 1.08994 * 109.47355 * 300.00482 * 1 2 3 29 29 H 1.09006 * 109.46887 * 60.00694 * 1 2 3 30 30 H 1.09003 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47453 * 240.00021 * 2 1 3 32 32 H 1.09004 * 109.47207 * 299.99659 * 3 2 1 33 33 H 1.08994 * 109.47494 * 59.99603 * 3 2 1 34 34 H 1.09002 * 109.47227 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46834 * 55.00991 * 4 2 1 36 36 H 1.08992 * 109.47099 * 295.00283 * 4 2 1 37 37 H 1.08992 * 117.49804 * 145.01988 * 7 5 4 38 38 H 1.09004 * 117.51624 * 359.97438 * 7 5 4 39 39 H 1.08998 * 109.58787 * 246.16207 * 13 12 10 40 40 H 1.09007 * 109.58600 * 6.44520 * 13 12 10 41 41 H 1.09002 * 109.49529 * 174.58688 * 14 13 12 42 42 H 1.09001 * 109.49774 * 294.68244 * 14 13 12 43 43 H 1.09007 * 109.45640 * 58.65727 * 15 14 13 44 44 H 1.09000 * 109.45893 * 178.62518 * 15 14 13 45 45 H 0.97005 * 120.00342 * 265.10679 * 18 16 15 46 46 H 0.97004 * 119.99948 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.58751 * 353.41659 * 27 12 10 48 48 H 1.08996 * 109.58750 * 113.69843 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8308 1.1881 6 1 4.0721 -0.0354 0.6423 7 6 4.1698 -2.2343 1.1156 8 6 4.2802 -1.4194 2.4058 9 1 3.6648 -1.7287 3.2506 10 6 5.6322 -0.8548 2.7587 11 8 6.1132 0.0323 2.0862 12 7 6.3068 -1.3360 3.8216 13 6 5.7375 -2.4111 4.6455 14 6 6.7557 -3.5518 4.7399 15 6 8.0864 -3.0010 5.2574 16 6 8.6246 -1.9527 4.2803 17 1 8.7566 -2.4073 3.2985 18 7 9.9120 -1.4461 4.7623 19 6 11.0671 -2.1192 4.4656 20 1 11.0290 -3.0236 3.8767 21 6 12.2868 -1.6394 4.9227 22 7 12.3332 -0.5374 5.6409 23 14 13.8625 -2.5579 4.5186 24 1 14.4208 -2.0449 3.2417 25 1 14.8493 -2.3515 5.6088 26 1 13.5697 -4.0075 4.3839 27 6 7.6260 -0.7962 4.1778 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6055 -1.7197 1.2952 36 1 1.7516 -0.1582 2.1369 37 1 5.0749 -2.3621 0.5220 38 1 3.4817 -3.0797 1.1120 39 1 5.5211 -2.0309 5.6438 40 1 4.8186 -2.7758 4.1863 41 1 6.3858 -4.3137 5.4260 42 1 6.9027 -3.9907 3.7530 43 1 7.9337 -2.5402 6.2334 44 1 8.8055 -3.8150 5.3486 45 1 9.9462 -0.6339 5.2916 46 1 13.1856 -0.2020 5.9600 47 1 7.9546 -0.0971 3.4088 48 1 7.5636 -0.2818 5.1367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000239708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:50 Heat of formation + Delta-G solvation = -40.954294 kcal Electronic energy + Delta-G solvation = -24001.753572 eV Core-core repulsion = 20669.917405 eV Total energy + Delta-G solvation = -3331.836167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44262 -39.31213 -38.15419 -36.22691 -35.86557 -33.82326 -32.77241 -30.33006 -28.49364 -27.98572 -26.73061 -26.01274 -24.16109 -23.39677 -22.28680 -21.29158 -20.69748 -19.82612 -19.14077 -18.41211 -17.09245 -16.78364 -16.25804 -16.13673 -15.64850 -15.51189 -15.28552 -15.08091 -14.84871 -14.72229 -14.48004 -14.00041 -13.91256 -13.59996 -13.42387 -13.06995 -12.94960 -12.91712 -12.88673 -12.50008 -12.35317 -12.21960 -12.13338 -11.97041 -11.85825 -11.73899 -11.68756 -11.60530 -11.44653 -11.10959 -10.95024 -10.85292 -10.73624 -9.68955 -9.06190 -7.98238 -5.28214 1.43925 1.46571 1.47058 1.54737 1.90760 2.53876 2.88165 3.34284 3.43431 3.72244 3.79330 3.86006 3.97053 4.02015 4.11169 4.13692 4.16553 4.21575 4.28975 4.33874 4.34964 4.51059 4.60023 4.75266 4.79903 4.81682 4.85509 4.86857 4.87416 4.95432 4.98716 5.03121 5.07134 5.13162 5.16476 5.19347 5.30671 5.38480 5.41200 5.44209 5.50726 5.54958 5.57298 5.58192 6.23243 6.44329 7.15463 7.28901 8.01355 8.26057 9.25110 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.002794 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.379801 B =10020.150679 C =10419.659071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.076 4.076 5 C -0.122 4.122 6 H 0.089 0.911 7 C -0.134 4.134 8 C -0.189 4.189 9 H 0.158 0.842 10 C 0.531 3.469 11 O -0.596 6.596 12 N -0.601 5.601 13 C 0.105 3.895 14 C -0.123 4.123 15 C -0.129 4.129 16 C 0.169 3.831 17 H 0.029 0.971 18 N -0.736 5.736 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.118 3.882 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.373 0.627 46 H 0.252 0.748 47 H 0.056 0.944 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.756 -5.913 -6.517 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.210 4.210 4 C -0.114 4.114 5 C -0.141 4.141 6 H 0.107 0.893 7 C -0.172 4.172 8 C -0.210 4.210 9 H 0.175 0.825 10 C 0.321 3.679 11 O -0.478 6.478 12 N -0.333 5.333 13 C -0.016 4.016 14 C -0.161 4.161 15 C -0.169 4.169 16 C 0.059 3.941 17 H 0.047 0.953 18 N -0.376 5.376 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.192 1.192 27 C -0.006 4.006 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.205 0.795 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.389 -5.590 -6.920 28.797 hybrid contribution 1.931 0.477 0.170 1.996 sum -25.458 -5.113 -6.750 26.830 Atomic orbital electron populations 1.21812 0.94033 1.02340 1.01939 1.21071 0.96338 0.95588 0.98257 1.21922 1.00425 0.96863 1.01760 1.21265 0.89927 1.01914 0.98250 1.22516 0.96375 0.97152 0.98073 0.89266 1.23201 1.03090 0.95568 0.95316 1.22344 0.94233 1.08424 0.95978 0.82505 1.20558 0.87010 0.81369 0.78921 1.90662 1.71033 1.33351 1.52736 1.48126 1.17997 1.38050 1.29108 1.22118 0.97399 0.86239 0.95872 1.21880 0.93991 0.97994 1.02251 1.22083 0.97058 0.98585 0.99150 1.20598 0.84734 0.93164 0.95557 0.95323 1.42496 1.01602 1.30027 1.63485 1.19540 0.85855 1.05377 1.26389 0.90904 1.25589 1.00929 0.98975 1.01279 1.69820 1.25270 1.24518 1.42301 0.85130 0.79387 0.78425 0.76767 1.21666 1.21910 1.19225 1.21538 0.82722 0.96176 1.00175 0.92548 0.92615 0.91696 0.91266 0.92436 0.92774 0.94072 0.89354 0.91218 0.90335 0.84263 0.89915 0.86064 0.87768 0.92042 0.92537 0.93529 0.79515 0.93936 0.92507 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.09 -1.22 2.92 -10.79 -0.03 -1.25 16 3 C -0.15 -2.45 9.01 71.98 0.65 -1.80 16 4 C -0.08 -0.96 4.96 30.60 0.15 -0.80 16 5 C -0.12 -2.29 5.04 -10.79 -0.05 -2.34 16 6 H 0.09 2.27 5.91 -2.39 -0.01 2.25 16 7 C -0.13 -2.20 9.88 30.60 0.30 -1.90 16 8 C -0.19 -3.67 4.69 -11.54 -0.05 -3.73 16 9 H 0.16 1.93 6.81 -2.39 -0.02 1.92 16 10 C 0.53 16.39 7.48 87.66 0.66 17.05 16 11 O -0.60 -24.54 15.67 -3.01 -0.05 -24.59 16 12 N -0.60 -17.74 2.98 -819.01 -2.44 -20.17 16 13 C 0.10 2.06 6.30 86.36 0.54 2.60 16 14 C -0.12 -2.74 6.08 30.67 0.19 -2.55 16 15 C -0.13 -4.32 5.47 30.63 0.17 -4.15 16 16 C 0.17 7.02 2.92 45.06 0.13 7.15 16 17 H 0.03 1.29 8.08 -2.39 -0.02 1.28 16 18 N -0.74 -38.60 5.13 -322.61 -1.65 -40.25 16 19 C -0.24 -13.71 9.93 84.03 0.83 -12.87 16 20 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 22 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 23 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.12 4.48 5.90 86.35 0.51 4.99 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.04 0.82 6.41 -2.39 -0.02 0.81 16 35 H 0.09 0.74 7.88 -2.39 -0.02 0.72 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.14 1.29 8.03 -2.38 -0.02 1.27 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.49 5.67 -2.38 -0.01 1.47 16 41 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.37 20.92 7.80 -92.70 -0.72 20.19 16 46 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.06 2.54 7.01 -2.39 -0.02 2.52 16 48 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -73.96 376.69 3.49 -70.47 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.20 Total: 29.99 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 5.12 Total: -4.33 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -3.81 Total: -120.65 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.96 3.49 -70.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000239708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.511 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds