Wall clock time and date at job start Fri Apr 10 2020 20:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47054 * 2 1 4 4 C 1.52999 * 109.47418 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.55654 * 29.30434 * 4 3 2 6 6 C 1.53069 * 117.49416 * 243.60129 * 4 3 2 7 7 C 1.52991 * 59.98407 * 252.51202 * 6 4 3 8 8 H 1.09004 * 117.50125 * 107.50009 * 7 6 4 9 9 C 1.50696 * 117.50148 * 252.50078 * 7 6 4 10 10 O 1.21287 * 120.00051 * 68.74113 * 9 7 6 11 11 N 1.34783 * 120.00006 * 248.74901 * 9 7 6 12 12 C 1.46506 * 119.99811 * 179.97438 * 11 9 7 13 13 H 1.08993 * 109.47068 * 34.99431 * 12 11 9 14 14 C 1.52999 * 109.46691 * 155.00013 * 12 11 9 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47127 * 299.99539 * 15 14 12 17 17 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 18 18 N 1.46496 * 109.46953 * 179.97438 * 16 15 14 19 19 C 1.36941 * 119.99878 * 154.99866 * 18 16 15 20 20 H 1.08003 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99972 * 179.97438 * 19 18 16 22 22 N 1.31609 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46888 * 60.00507 * 23 21 19 25 25 H 1.48499 * 109.46966 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47488 * 300.00489 * 23 21 19 27 27 C 1.53002 * 109.46817 * 60.00361 * 16 15 14 28 28 C 1.52996 * 109.46972 * 299.99733 * 27 16 15 29 29 H 1.08999 * 109.47181 * 60.00357 * 1 2 3 30 30 H 1.08998 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47331 * 299.99778 * 1 2 3 32 32 H 1.09001 * 109.47349 * 239.99703 * 2 1 3 33 33 H 1.08999 * 109.47181 * 119.99643 * 2 1 3 34 34 H 1.09001 * 109.47285 * 59.99664 * 3 2 1 35 35 H 1.08999 * 109.46835 * 299.99855 * 3 2 1 36 36 H 1.08997 * 117.51530 * 145.03044 * 6 4 3 37 37 H 1.09013 * 117.51407 * 359.97438 * 6 4 3 38 38 H 0.97000 * 119.99910 * 359.97438 * 11 9 7 39 39 H 1.08993 * 109.47839 * 59.99891 * 14 12 11 40 40 H 1.09000 * 109.47160 * 299.99453 * 14 12 11 41 41 H 1.09001 * 109.46801 * 59.99811 * 15 14 12 42 42 H 1.09001 * 109.46998 * 179.97438 * 15 14 12 43 43 H 0.97001 * 120.00575 * 335.00735 * 18 16 15 44 44 H 0.97000 * 120.00093 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.47407 * 60.00219 * 27 16 15 46 46 H 1.09000 * 109.46986 * 179.97438 * 27 16 15 47 47 H 1.09001 * 109.46993 * 180.02562 * 28 27 16 48 48 H 1.09000 * 109.47380 * 299.99696 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5852 -0.4823 6 6 4.2771 2.0462 1.2154 7 6 4.2763 2.7946 -0.1190 8 1 3.6510 3.6840 -0.1969 9 6 5.5687 2.8390 -0.8927 10 8 6.0103 1.8269 -1.3944 11 7 6.2341 4.0035 -1.0271 12 6 7.4908 4.0465 -1.7788 13 1 7.4399 3.3458 -2.6121 14 6 7.7160 5.4616 -2.3152 15 6 9.0288 5.5067 -3.0997 16 6 10.1873 5.1203 -2.1780 17 1 10.2377 5.8211 -1.3446 18 7 11.4441 5.1629 -2.9293 19 6 12.6283 5.3652 -2.2719 20 1 12.6356 5.4929 -1.1995 21 6 13.8193 5.4050 -2.9838 22 7 13.8105 5.2489 -4.2906 23 14 15.4347 5.6802 -2.0869 24 1 15.6437 4.5917 -1.0986 25 1 16.5508 5.6810 -3.0664 26 1 15.3937 6.9869 -1.3828 27 6 9.9620 3.7052 -1.6416 28 6 8.6493 3.6602 -0.8571 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.2124 1.5859 1.5338 37 1 3.6523 2.4435 2.0154 38 1 5.8808 4.8130 -0.6261 39 1 7.7669 6.1623 -1.4818 40 1 6.8904 5.7370 -2.9715 41 1 8.9782 4.8059 -3.9331 42 1 9.1890 6.5147 -3.4822 43 1 11.4377 5.0480 -3.8925 44 1 14.6427 5.2771 -4.7881 45 1 9.9116 3.0045 -2.4749 46 1 10.7876 3.4298 -0.9853 47 1 8.4890 2.6521 -0.4746 48 1 8.6998 4.3608 -0.0236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034730147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:44 Heat of formation + Delta-G solvation = -39.043736 kcal Electronic energy + Delta-G solvation = -23361.105876 eV Core-core repulsion = 20029.352557 eV Total energy + Delta-G solvation = -3331.753319 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26914 -38.45065 -37.12783 -34.81186 -34.17188 -32.97415 -30.64811 -30.38238 -28.09099 -27.27928 -24.47523 -23.24227 -22.37872 -22.22300 -21.07880 -20.67808 -20.17401 -19.35004 -17.46928 -16.91805 -16.24685 -15.59171 -15.19758 -15.15807 -14.63674 -14.45632 -13.97958 -13.72733 -13.64350 -13.50812 -13.10581 -13.01164 -12.54787 -12.54527 -12.35947 -12.00119 -11.79392 -11.65604 -11.45032 -11.36255 -11.17569 -11.01988 -10.78979 -10.74150 -10.65651 -10.51613 -10.30403 -10.19273 -10.08333 -9.81065 -9.73535 -9.54052 -8.93895 -8.81983 -6.91759 -5.73165 -3.01572 2.43891 3.05697 3.45821 3.50188 3.51209 3.58558 4.26741 4.46214 4.51986 4.61677 4.72813 4.79835 4.85512 4.93208 4.98048 5.07566 5.17553 5.30935 5.36235 5.40331 5.44796 5.50633 5.54412 5.63810 5.66582 5.70218 5.70958 5.75962 5.86967 5.88353 5.90275 5.91108 6.05335 6.07708 6.26404 6.30532 6.33354 6.51031 6.59657 6.68897 6.75265 7.01543 7.17761 7.50645 7.72610 8.22904 8.45748 9.56504 10.15423 10.50000 11.49553 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.042665 B = 0.002253 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.111422 B =12422.280986 C =12592.204572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.191 4.191 8 H 0.121 0.879 9 C 0.540 3.460 10 O -0.540 6.540 11 N -0.722 5.722 12 C 0.145 3.855 13 H 0.087 0.913 14 C -0.118 4.118 15 C -0.121 4.121 16 C 0.177 3.823 17 H 0.046 0.954 18 N -0.725 5.725 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.132 4.132 28 C -0.123 4.123 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.398 0.602 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.499 -4.281 10.041 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.127 4.127 4 C -0.137 4.137 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.212 4.212 8 H 0.139 0.861 9 C 0.326 3.674 10 O -0.417 6.417 11 N -0.372 5.372 12 C 0.041 3.959 13 H 0.105 0.895 14 C -0.157 4.157 15 C -0.159 4.159 16 C 0.067 3.933 17 H 0.064 0.936 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.173 4.173 28 C -0.162 4.162 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.005 -4.959 9.764 28.217 hybrid contribution 0.861 0.576 0.358 1.096 sum -25.144 -4.383 10.122 27.457 Atomic orbital electron populations 1.21780 0.95874 1.01667 1.01736 1.21508 0.95637 0.96488 1.02432 1.21243 0.91928 0.97406 1.02130 1.22464 0.94618 0.95529 1.01107 0.86395 1.23108 1.03153 1.02126 0.90254 1.22320 0.97940 0.98797 1.02153 0.86090 1.19647 0.84475 0.83418 0.79842 1.90711 1.68760 1.33906 1.48290 1.46101 1.24713 1.10639 1.55708 1.21115 0.82174 0.98127 0.94472 0.89532 1.21745 0.98591 0.95180 1.00166 1.21755 0.93411 1.02090 0.98687 1.20234 0.86011 0.93481 0.93530 0.93624 1.42422 1.00838 1.86520 1.06783 1.19203 0.84792 1.41091 0.91787 0.91295 1.24737 0.97709 1.03023 0.95585 1.69647 1.26246 1.57091 1.05221 0.86283 0.83680 0.77949 0.78373 1.21326 1.21727 1.21336 1.22225 0.94792 1.00740 0.99560 1.21885 0.95064 1.00956 0.98295 0.92740 0.92729 0.92821 0.91729 0.91789 0.91675 0.91421 0.88258 0.87892 0.76865 0.91589 0.91922 0.91983 0.91367 0.78307 0.93516 0.92520 0.91832 0.92493 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.78 5.89 -26.73 -0.16 -0.94 16 3 C -0.09 -0.59 5.50 -26.73 -0.15 -0.73 16 4 C -0.12 -1.02 5.25 -90.59 -0.48 -1.50 16 5 H 0.12 1.26 7.60 -51.93 -0.39 0.87 16 6 C -0.15 -1.17 9.88 -26.70 -0.26 -1.43 16 7 C -0.19 -1.69 5.91 -91.78 -0.54 -2.23 16 8 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 9 C 0.54 6.78 7.58 -10.98 -0.08 6.70 16 10 O -0.54 -9.11 15.92 5.55 0.09 -9.03 16 11 N -0.72 -8.02 5.08 -53.81 -0.27 -8.29 16 12 C 0.14 1.97 2.46 -67.93 -0.17 1.80 16 13 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 14 C -0.12 -1.49 5.39 -26.73 -0.14 -1.63 16 15 C -0.12 -1.95 5.39 -26.73 -0.14 -2.10 16 16 C 0.18 3.50 2.77 -67.93 -0.19 3.32 16 17 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 18 N -0.73 -18.31 5.12 -53.43 -0.27 -18.58 16 19 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 23 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C -0.13 -2.46 5.50 -26.73 -0.15 -2.60 16 28 C -0.12 -1.87 5.49 -26.73 -0.15 -2.02 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.36 7.88 -51.93 -0.41 -0.05 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 0.60 8.03 -51.92 -0.42 0.18 16 38 H 0.40 3.21 8.60 -40.82 -0.35 2.86 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -32.34 384.38 -10.46 -42.80 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -9.01 Total: 8.60 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.48 Total: -11.13 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.18 Total: -54.63 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.34 -10.46 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034730147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.756 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds