Wall clock time and date at job start Fri Apr 10 2020 20:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47054 * 2 1 4 4 C 1.52999 * 109.47418 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.55654 * 29.30434 * 4 3 2 6 6 C 1.53069 * 117.49416 * 243.60129 * 4 3 2 7 7 C 1.52991 * 59.98407 * 252.51202 * 6 4 3 8 8 H 1.09004 * 117.50125 * 107.50009 * 7 6 4 9 9 C 1.50696 * 117.50148 * 252.50078 * 7 6 4 10 10 O 1.21287 * 120.00051 * 68.74113 * 9 7 6 11 11 N 1.34783 * 120.00006 * 248.74901 * 9 7 6 12 12 C 1.46506 * 119.99811 * 179.97438 * 11 9 7 13 13 H 1.08993 * 109.47068 * 34.99431 * 12 11 9 14 14 C 1.52999 * 109.46691 * 155.00013 * 12 11 9 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47127 * 299.99539 * 15 14 12 17 17 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 18 18 N 1.46496 * 109.46953 * 179.97438 * 16 15 14 19 19 C 1.36941 * 119.99878 * 154.99866 * 18 16 15 20 20 H 1.08003 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99972 * 179.97438 * 19 18 16 22 22 N 1.31609 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46888 * 60.00507 * 23 21 19 25 25 H 1.48499 * 109.46966 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47488 * 300.00489 * 23 21 19 27 27 C 1.53002 * 109.46817 * 60.00361 * 16 15 14 28 28 C 1.52996 * 109.46972 * 299.99733 * 27 16 15 29 29 H 1.08999 * 109.47181 * 60.00357 * 1 2 3 30 30 H 1.08998 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47331 * 299.99778 * 1 2 3 32 32 H 1.09001 * 109.47349 * 239.99703 * 2 1 3 33 33 H 1.08999 * 109.47181 * 119.99643 * 2 1 3 34 34 H 1.09001 * 109.47285 * 59.99664 * 3 2 1 35 35 H 1.08999 * 109.46835 * 299.99855 * 3 2 1 36 36 H 1.08997 * 117.51530 * 145.03044 * 6 4 3 37 37 H 1.09013 * 117.51407 * 359.97438 * 6 4 3 38 38 H 0.97000 * 119.99910 * 359.97438 * 11 9 7 39 39 H 1.08993 * 109.47839 * 59.99891 * 14 12 11 40 40 H 1.09000 * 109.47160 * 299.99453 * 14 12 11 41 41 H 1.09001 * 109.46801 * 59.99811 * 15 14 12 42 42 H 1.09001 * 109.46998 * 179.97438 * 15 14 12 43 43 H 0.97001 * 120.00575 * 335.00735 * 18 16 15 44 44 H 0.97000 * 120.00093 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.47407 * 60.00219 * 27 16 15 46 46 H 1.09000 * 109.46986 * 179.97438 * 27 16 15 47 47 H 1.09001 * 109.46993 * 180.02562 * 28 27 16 48 48 H 1.09000 * 109.47380 * 299.99696 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5852 -0.4823 6 6 4.2771 2.0462 1.2154 7 6 4.2763 2.7946 -0.1190 8 1 3.6510 3.6840 -0.1969 9 6 5.5687 2.8390 -0.8927 10 8 6.0103 1.8269 -1.3944 11 7 6.2341 4.0035 -1.0271 12 6 7.4908 4.0465 -1.7788 13 1 7.4399 3.3458 -2.6121 14 6 7.7160 5.4616 -2.3152 15 6 9.0288 5.5067 -3.0997 16 6 10.1873 5.1203 -2.1780 17 1 10.2377 5.8211 -1.3446 18 7 11.4441 5.1629 -2.9293 19 6 12.6283 5.3652 -2.2719 20 1 12.6356 5.4929 -1.1995 21 6 13.8193 5.4050 -2.9838 22 7 13.8105 5.2489 -4.2906 23 14 15.4347 5.6802 -2.0869 24 1 15.6437 4.5917 -1.0986 25 1 16.5508 5.6810 -3.0664 26 1 15.3937 6.9869 -1.3828 27 6 9.9620 3.7052 -1.6416 28 6 8.6493 3.6602 -0.8571 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.2124 1.5859 1.5338 37 1 3.6523 2.4435 2.0154 38 1 5.8808 4.8130 -0.6261 39 1 7.7669 6.1623 -1.4818 40 1 6.8904 5.7370 -2.9715 41 1 8.9782 4.8059 -3.9331 42 1 9.1890 6.5147 -3.4822 43 1 11.4377 5.0480 -3.8925 44 1 14.6427 5.2771 -4.7881 45 1 9.9116 3.0045 -2.4749 46 1 10.7876 3.4298 -0.9853 47 1 8.4890 2.6521 -0.4746 48 1 8.6998 4.3608 -0.0236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034730147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:44 Heat of formation + Delta-G solvation = -58.649773 kcal Electronic energy + Delta-G solvation = -23361.956057 eV Core-core repulsion = 20029.352557 eV Total energy + Delta-G solvation = -3332.603501 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26625 -39.62071 -38.05222 -36.33578 -34.75765 -34.57355 -32.43924 -31.71079 -29.27521 -28.20374 -25.90083 -24.69800 -23.63850 -22.84735 -22.24742 -21.46487 -21.23884 -20.63253 -19.12575 -18.21060 -17.35130 -16.85748 -16.19164 -16.09954 -15.88319 -15.46421 -15.31914 -15.22934 -15.04686 -14.59371 -14.17019 -14.04973 -13.70327 -13.48344 -13.17267 -13.11717 -13.10274 -12.91323 -12.79981 -12.44899 -12.32658 -12.20439 -12.17104 -12.05472 -11.92951 -11.67095 -11.66323 -11.47497 -11.22274 -11.15620 -10.98400 -10.85725 -10.68888 -10.02667 -9.00055 -7.93515 -5.21853 1.46194 1.49382 1.50986 1.55339 2.12978 2.56528 2.88385 3.38951 3.59842 3.73185 3.78584 3.82718 3.89447 3.91328 4.19151 4.22974 4.28557 4.31116 4.35446 4.38760 4.40498 4.52726 4.58015 4.64100 4.66319 4.84233 4.87113 4.90092 4.96205 4.98643 5.01034 5.08878 5.10738 5.12730 5.22863 5.23582 5.26219 5.37861 5.42052 5.47468 5.52468 5.53722 5.55938 5.62447 6.28915 6.61803 7.30871 7.34299 8.11966 8.34481 9.29938 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.042665 B = 0.002253 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.111422 B =12422.280986 C =12592.204572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.082 4.082 4 C -0.127 4.127 5 H 0.087 0.913 6 C -0.137 4.137 7 C -0.189 4.189 8 H 0.155 0.845 9 C 0.533 3.467 10 O -0.592 6.592 11 N -0.706 5.706 12 C 0.152 3.848 13 H 0.060 0.940 14 C -0.104 4.104 15 C -0.114 4.114 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.739 5.739 19 C -0.239 4.239 20 H 0.075 0.925 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.275 1.275 27 C -0.123 4.123 28 C -0.110 4.110 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.418 0.582 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.044 0.956 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.859 -2.633 12.208 31.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.119 4.119 4 C -0.145 4.145 5 H 0.105 0.895 6 C -0.174 4.174 7 C -0.209 4.209 8 H 0.172 0.828 9 C 0.321 3.679 10 O -0.472 6.472 11 N -0.357 5.357 12 C 0.047 3.953 13 H 0.078 0.922 14 C -0.142 4.142 15 C -0.153 4.153 16 C 0.065 3.935 17 H 0.067 0.933 18 N -0.378 5.378 19 C -0.370 4.370 20 H 0.093 0.907 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.207 1.207 25 H -0.223 1.223 26 H -0.201 1.201 27 C -0.164 4.164 28 C -0.150 4.150 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.255 0.745 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.421 -3.276 11.988 31.019 hybrid contribution 1.563 -0.001 -0.300 1.592 sum -26.858 -3.277 11.688 29.474 Atomic orbital electron populations 1.21763 0.94929 1.01938 1.02215 1.21514 0.96437 0.96538 1.01785 1.21214 0.90097 0.97490 1.03095 1.22445 0.95937 0.94494 1.01663 0.89452 1.23193 1.02709 1.01066 0.90433 1.22367 0.96254 1.00157 1.02172 0.82755 1.20365 0.85439 0.82771 0.79277 1.90698 1.70282 1.35782 1.50486 1.45883 1.23471 1.11324 1.54993 1.20829 0.82705 0.98279 0.93519 0.92218 1.21642 0.97048 0.94656 1.00887 1.21647 0.93924 1.01597 0.98099 1.20485 0.85263 0.93867 0.93928 0.93290 1.42667 1.02151 1.86524 1.06497 1.19602 0.85921 1.39324 0.92195 0.90689 1.25563 1.01152 1.03985 0.96388 1.69813 1.26581 1.59074 1.06712 0.85232 0.79335 0.78236 0.77102 1.20725 1.22266 1.20127 1.22034 0.96115 0.99478 0.98774 1.21744 0.93783 1.00868 0.98577 0.92633 0.92646 0.91919 0.93076 0.91881 0.89753 0.91243 0.89902 0.84823 0.74469 0.89238 0.89331 0.93062 0.91306 0.79749 0.94137 0.94500 0.94117 0.93762 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.13 -1.45 5.89 30.60 0.18 -1.27 16 3 C -0.08 -0.89 5.50 30.60 0.17 -0.72 16 4 C -0.13 -2.02 5.25 -10.77 -0.06 -2.08 16 5 H 0.09 1.95 7.60 -2.39 -0.02 1.94 16 6 C -0.14 -1.81 9.88 30.61 0.30 -1.51 16 7 C -0.19 -2.87 5.91 -11.55 -0.07 -2.93 16 8 H 0.15 1.33 8.14 -2.38 -0.02 1.31 16 9 C 0.53 12.75 7.58 87.65 0.66 13.41 16 10 O -0.59 -20.44 15.92 -3.05 -0.05 -20.49 16 11 N -0.71 -13.94 5.08 -442.52 -2.25 -16.19 16 12 C 0.15 3.91 2.46 44.99 0.11 4.02 16 13 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 14 C -0.10 -2.32 5.39 30.60 0.16 -2.15 16 15 C -0.11 -3.58 5.39 30.60 0.16 -3.41 16 16 C 0.17 6.80 2.77 44.99 0.12 6.92 16 17 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 18 N -0.74 -38.02 5.12 -322.94 -1.65 -39.67 16 19 C -0.24 -13.45 9.93 84.03 0.83 -12.62 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 22 N -0.97 -60.61 13.06 21.65 0.28 -60.32 16 23 Si 0.97 46.90 29.55 68.60 2.03 48.92 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 C -0.12 -4.67 5.50 30.59 0.17 -4.50 16 28 C -0.11 -3.29 5.49 30.59 0.17 -3.12 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.62 7.88 -2.39 -0.02 0.60 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.13 0.98 8.03 -2.38 -0.02 0.96 16 38 H 0.42 5.02 8.60 -92.71 -0.80 4.22 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.37 20.60 7.80 -92.71 -0.72 19.87 16 44 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -72.84 384.38 1.87 -70.97 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.60 Total: 31.56 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.11 Total: -14.78 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -3.62 Total: -116.19 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -72.84 1.87 -70.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034730147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.322 kcal (2) G-P(sol) polarization free energy of solvation -72.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds