Wall clock time and date at job start Fri Apr 10 2020 20:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00204 * 2 1 4 4 C 1.50697 * 119.99884 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47466 * 94.99937 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47535 * 325.00618 * 9 8 6 11 11 C 1.53003 * 109.47218 * 85.00262 * 9 8 6 12 12 C 1.53008 * 109.46625 * 59.99600 * 11 9 8 13 13 C 1.52997 * 109.46939 * 60.00483 * 12 11 9 14 14 C 1.53003 * 109.47067 * 299.99246 * 13 12 11 15 15 C 1.52999 * 109.46630 * 60.00488 * 14 13 12 16 16 H 1.09001 * 109.47322 * 60.00456 * 15 14 13 17 17 C 1.53006 * 109.46979 * 179.97438 * 15 14 13 18 18 N 1.46497 * 109.46932 * 294.99849 * 17 15 14 19 19 C 1.36942 * 119.99954 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99882 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00081 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99843 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47080 * 90.00071 * 23 21 19 25 25 H 1.48500 * 109.47345 * 209.99590 * 23 21 19 26 26 H 1.48501 * 109.47500 * 329.99751 * 23 21 19 27 27 H 1.07998 * 120.00144 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47015 * 270.00523 * 3 2 1 30 30 H 1.09006 * 109.46747 * 29.99882 * 3 2 1 31 31 H 1.08998 * 109.47478 * 149.99514 * 3 2 1 32 32 H 1.09002 * 109.47120 * 334.99690 * 4 2 1 33 33 H 1.08998 * 109.46862 * 215.00492 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99773 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99964 * 5 4 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47614 * 179.97438 * 11 9 8 38 38 H 1.08998 * 109.47302 * 299.99899 * 11 9 8 39 39 H 1.09006 * 109.46593 * 179.97438 * 12 11 9 40 40 H 1.08988 * 109.47178 * 299.99811 * 12 11 9 41 41 H 1.09004 * 109.47419 * 59.99672 * 13 12 11 42 42 H 1.09006 * 109.47022 * 180.02562 * 13 12 11 43 43 H 1.09006 * 109.47034 * 180.02562 * 14 13 12 44 44 H 1.08996 * 109.47375 * 300.00143 * 14 13 12 45 45 H 1.08999 * 109.47033 * 55.00004 * 17 15 14 46 46 H 1.08995 * 109.47162 * 175.00190 * 17 15 14 47 47 H 0.97003 * 120.00659 * 0.02562 * 18 17 15 48 48 H 0.96996 * 120.00065 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 6 3.1814 -2.9882 -1.4382 7 8 3.4052 -3.5595 -0.3921 8 7 3.6061 -3.5206 -2.6012 9 6 4.3385 -4.7893 -2.6017 10 1 4.9654 -4.8473 -1.7119 11 6 3.3443 -5.9523 -2.6017 12 6 2.4643 -5.8708 -3.8507 13 6 3.3436 -5.9516 -5.1002 14 6 4.3379 -4.7887 -5.1002 15 6 5.2178 -4.8701 -3.8512 16 1 5.7629 -5.8140 -3.8516 17 6 6.2125 -3.7075 -3.8514 18 7 7.1316 -3.8515 -4.9831 19 6 8.1156 -2.9215 -5.1887 20 1 8.2143 -2.0822 -4.5163 21 6 8.9862 -3.0577 -6.2613 22 7 8.8662 -4.0809 -7.0804 23 14 10.3288 -1.7895 -6.5412 24 1 11.5564 -2.1994 -5.8131 25 1 10.6237 -1.6931 -7.9934 26 1 9.8738 -0.4679 -6.0397 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4744 2.0647 0.5139 31 1 3.0159 1.1748 0.5139 32 1 1.4385 -2.0856 0.4334 33 1 2.9741 -1.1991 0.5890 34 1 3.0523 -0.9028 -1.8717 35 1 1.5166 -1.7893 -2.0272 36 1 3.4267 -3.0638 -3.4379 37 1 3.8893 -6.8963 -2.6024 38 1 2.7179 -5.8948 -1.7115 39 1 1.7563 -6.6996 -3.8509 40 1 1.9194 -4.9270 -3.8503 41 1 3.8886 -6.8956 -5.1005 42 1 2.7168 -5.8931 -5.9900 43 1 4.9641 -4.8460 -5.9906 44 1 3.7929 -3.8447 -5.0998 45 1 5.6708 -2.7659 -3.9408 46 1 6.7790 -3.7138 -2.9203 47 1 7.0428 -4.6052 -5.5873 48 1 9.4743 -4.1759 -7.8301 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345883.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:38 Heat of formation + Delta-G solvation = -44.082679 kcal Electronic energy + Delta-G solvation = -24276.545505 eV Core-core repulsion = 20944.573681 eV Total energy + Delta-G solvation = -3331.971824 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 6.74 seconds Orbital eigenvalues (eV) -40.28924 -38.34697 -36.49602 -34.64865 -33.57052 -31.93101 -31.49287 -29.78182 -29.30578 -27.48469 -25.38590 -24.59123 -22.98381 -22.15434 -20.92151 -20.36172 -18.93716 -18.57594 -17.39071 -16.82958 -15.89220 -15.61642 -15.11594 -14.95983 -14.54258 -14.43670 -14.04839 -13.94181 -13.65623 -13.42506 -13.24298 -13.07039 -12.72504 -12.66242 -12.25018 -12.04051 -11.94858 -11.88566 -11.65017 -11.40088 -11.21793 -11.04700 -10.89858 -10.88421 -10.72206 -10.34684 -10.19830 -9.97585 -9.84889 -9.77038 -9.61556 -9.22545 -8.90570 -8.80207 -6.91878 -5.77321 -3.05511 1.97911 2.74878 3.33237 3.43040 3.48348 3.49677 4.54181 4.57963 4.68944 4.83295 4.88826 4.91317 4.93109 5.05627 5.12410 5.27488 5.32227 5.35186 5.41025 5.49796 5.57205 5.62502 5.65269 5.67222 5.71365 5.74008 5.76746 5.80244 5.84478 5.99718 6.07135 6.16057 6.17217 6.24437 6.29033 6.39439 6.41403 6.49408 6.64390 6.66047 6.68646 6.81664 6.89080 7.63802 7.69764 8.34388 8.41943 9.53154 10.11164 10.45931 11.45596 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003835 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.456339 B = 7298.698551 C = 9008.827701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.136 4.136 6 C 0.512 3.488 7 O -0.547 6.547 8 N -0.716 5.716 9 C 0.154 3.846 10 H 0.086 0.914 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.110 4.110 15 C -0.102 4.102 16 H 0.084 0.916 17 C 0.161 3.839 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.200 2.775 9.836 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.122 4.122 3 C -0.179 4.179 4 C -0.108 4.108 5 C -0.176 4.176 6 C 0.299 3.701 7 O -0.425 6.425 8 N -0.368 5.368 9 C 0.049 3.951 10 H 0.104 0.896 11 C -0.166 4.166 12 C -0.153 4.153 13 C -0.158 4.158 14 C -0.147 4.147 15 C -0.121 4.121 16 H 0.103 0.897 17 C 0.033 3.967 18 N -0.376 5.376 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.236 0.764 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.918 2.509 10.595 20.966 hybrid contribution 0.690 0.668 -0.909 1.322 sum -17.228 3.177 9.685 20.017 Atomic orbital electron populations 1.23690 0.95236 1.01764 1.02992 1.21819 0.95435 0.95829 0.99153 1.20902 1.00295 0.94422 1.02302 1.20423 1.00824 0.94066 0.95436 1.21638 1.01188 0.95578 0.99195 1.20642 0.79170 0.86601 0.83732 1.90681 1.57216 1.63106 1.31519 1.46153 1.57349 1.24249 1.09026 1.20936 0.92372 0.82494 0.99256 0.89557 1.21897 0.98251 0.98400 0.98084 1.21487 0.97708 1.01300 0.94763 1.21588 0.97703 0.99363 0.97181 1.21526 0.97089 0.97334 0.98800 1.21624 0.95885 1.01253 0.93332 0.89748 1.20632 0.90322 0.94184 0.91566 1.42372 1.34973 1.30127 1.30078 1.19224 1.06437 1.02953 1.08346 0.91320 1.24723 0.99825 0.98361 0.98064 1.69653 1.40193 1.30615 1.17796 0.86201 0.82208 0.80861 0.76996 1.21738 1.21787 1.20805 0.88523 0.88599 0.91272 0.91967 0.91643 0.90664 0.90417 0.88731 0.89066 0.76366 0.91126 0.91834 0.92562 0.92333 0.91923 0.92302 0.90313 0.92712 0.96449 0.96516 0.78218 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 13.89 29.01 0.40 -1.21 16 2 C -0.12 -1.07 5.31 -101.07 -0.54 -1.61 16 3 C -0.12 -0.95 10.03 36.01 0.36 -0.59 16 4 C -0.07 -0.70 4.67 -27.89 -0.13 -0.83 16 5 C -0.14 -1.32 5.68 -27.88 -0.16 -1.48 16 6 C 0.51 6.65 7.79 -10.98 -0.09 6.56 16 7 O -0.55 -9.02 15.64 5.56 0.09 -8.94 16 8 N -0.72 -8.85 3.62 -53.81 -0.19 -9.05 16 9 C 0.15 2.11 2.23 -67.93 -0.15 1.96 16 10 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 11 C -0.13 -1.54 5.60 -26.73 -0.15 -1.69 16 12 C -0.11 -1.25 5.77 -26.73 -0.15 -1.40 16 13 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 14 C -0.11 -1.56 4.90 -26.73 -0.13 -1.69 16 15 C -0.10 -1.57 2.02 -90.62 -0.18 -1.75 16 16 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.16 3.16 5.42 -4.04 -0.02 3.14 16 18 N -0.73 -18.12 5.33 -59.91 -0.32 -18.44 16 19 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.10 0.74 7.99 -52.49 -0.42 0.33 16 28 H 0.10 0.67 8.04 -52.48 -0.42 0.25 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.42 8.06 -51.93 -0.42 0.01 16 31 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 33 H 0.08 0.86 8.06 -51.93 -0.42 0.45 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 4.46 6.67 -40.82 -0.27 4.19 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.62 7.60 -51.94 -0.39 0.23 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 44 H 0.05 0.73 6.51 -51.93 -0.34 0.39 16 45 H 0.02 0.34 7.61 -51.93 -0.40 -0.05 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 48 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -31.43 378.97 -9.09 -40.51 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -8.73 Total: 9.58 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.34 Total: -9.48 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.21 Total: -54.74 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.43 -9.09 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345883.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.568 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.74 seconds