Wall clock time and date at job start Fri Apr 10 2020 20:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00204 * 2 1 4 4 C 1.50697 * 119.99884 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47466 * 94.99937 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47535 * 325.00618 * 9 8 6 11 11 C 1.53003 * 109.47218 * 85.00262 * 9 8 6 12 12 C 1.53008 * 109.46625 * 59.99600 * 11 9 8 13 13 C 1.52997 * 109.46939 * 60.00483 * 12 11 9 14 14 C 1.53003 * 109.47067 * 299.99246 * 13 12 11 15 15 C 1.52999 * 109.46630 * 60.00488 * 14 13 12 16 16 H 1.09001 * 109.47322 * 60.00456 * 15 14 13 17 17 C 1.53006 * 109.46979 * 179.97438 * 15 14 13 18 18 N 1.46497 * 109.46932 * 294.99849 * 17 15 14 19 19 C 1.36942 * 119.99954 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99882 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00081 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99843 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47080 * 90.00071 * 23 21 19 25 25 H 1.48500 * 109.47345 * 209.99590 * 23 21 19 26 26 H 1.48501 * 109.47500 * 329.99751 * 23 21 19 27 27 H 1.07998 * 120.00144 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47015 * 270.00523 * 3 2 1 30 30 H 1.09006 * 109.46747 * 29.99882 * 3 2 1 31 31 H 1.08998 * 109.47478 * 149.99514 * 3 2 1 32 32 H 1.09002 * 109.47120 * 334.99690 * 4 2 1 33 33 H 1.08998 * 109.46862 * 215.00492 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99773 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99964 * 5 4 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47614 * 179.97438 * 11 9 8 38 38 H 1.08998 * 109.47302 * 299.99899 * 11 9 8 39 39 H 1.09006 * 109.46593 * 179.97438 * 12 11 9 40 40 H 1.08988 * 109.47178 * 299.99811 * 12 11 9 41 41 H 1.09004 * 109.47419 * 59.99672 * 13 12 11 42 42 H 1.09006 * 109.47022 * 180.02562 * 13 12 11 43 43 H 1.09006 * 109.47034 * 180.02562 * 14 13 12 44 44 H 1.08996 * 109.47375 * 300.00143 * 14 13 12 45 45 H 1.08999 * 109.47033 * 55.00004 * 17 15 14 46 46 H 1.08995 * 109.47162 * 175.00190 * 17 15 14 47 47 H 0.97003 * 120.00659 * 0.02562 * 18 17 15 48 48 H 0.96996 * 120.00065 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 6 3.1814 -2.9882 -1.4382 7 8 3.4052 -3.5595 -0.3921 8 7 3.6061 -3.5206 -2.6012 9 6 4.3385 -4.7893 -2.6017 10 1 4.9654 -4.8473 -1.7119 11 6 3.3443 -5.9523 -2.6017 12 6 2.4643 -5.8708 -3.8507 13 6 3.3436 -5.9516 -5.1002 14 6 4.3379 -4.7887 -5.1002 15 6 5.2178 -4.8701 -3.8512 16 1 5.7629 -5.8140 -3.8516 17 6 6.2125 -3.7075 -3.8514 18 7 7.1316 -3.8515 -4.9831 19 6 8.1156 -2.9215 -5.1887 20 1 8.2143 -2.0822 -4.5163 21 6 8.9862 -3.0577 -6.2613 22 7 8.8662 -4.0809 -7.0804 23 14 10.3288 -1.7895 -6.5412 24 1 11.5564 -2.1994 -5.8131 25 1 10.6237 -1.6931 -7.9934 26 1 9.8738 -0.4679 -6.0397 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4744 2.0647 0.5139 31 1 3.0159 1.1748 0.5139 32 1 1.4385 -2.0856 0.4334 33 1 2.9741 -1.1991 0.5890 34 1 3.0523 -0.9028 -1.8717 35 1 1.5166 -1.7893 -2.0272 36 1 3.4267 -3.0638 -3.4379 37 1 3.8893 -6.8963 -2.6024 38 1 2.7179 -5.8948 -1.7115 39 1 1.7563 -6.6996 -3.8509 40 1 1.9194 -4.9270 -3.8503 41 1 3.8886 -6.8956 -5.1005 42 1 2.7168 -5.8931 -5.9900 43 1 4.9641 -4.8460 -5.9906 44 1 3.7929 -3.8447 -5.0998 45 1 5.6708 -2.7659 -3.9408 46 1 6.7790 -3.7138 -2.9203 47 1 7.0428 -4.6052 -5.5873 48 1 9.4743 -4.1759 -7.8301 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754345883.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:31 Heat of formation + Delta-G solvation = -61.878971 kcal Electronic energy + Delta-G solvation = -24277.317210 eV Core-core repulsion = 20944.573681 eV Total energy + Delta-G solvation = -3332.743529 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.40049 -39.46568 -37.25399 -36.44809 -34.64704 -33.71281 -32.34782 -31.23985 -30.53784 -28.08719 -27.00581 -25.55342 -24.68520 -23.28501 -22.10459 -21.58691 -20.01902 -19.29530 -19.24014 -18.00612 -16.94954 -16.67174 -16.61381 -16.17765 -15.76688 -15.40965 -15.22683 -15.13659 -14.85887 -14.83057 -14.58837 -14.17275 -13.94816 -13.56567 -13.36054 -13.10859 -13.02316 -12.92886 -12.81612 -12.71317 -12.57531 -12.51588 -12.12659 -11.94863 -11.92225 -11.85234 -11.79162 -11.41384 -11.17893 -11.03448 -10.85388 -10.82710 -9.94665 -9.89119 -8.99230 -7.95585 -5.23917 1.33141 1.46854 1.48369 1.56677 1.71679 2.32235 2.55345 3.37821 3.58149 3.75982 3.80334 3.85116 3.99459 4.08496 4.09710 4.23865 4.29642 4.37897 4.43689 4.48447 4.51388 4.59036 4.66486 4.70832 4.71541 4.77491 4.87345 4.92128 4.99875 5.02315 5.09253 5.11370 5.16270 5.18327 5.21308 5.27742 5.31280 5.36527 5.47351 5.49671 5.53522 5.64646 5.77536 6.01033 6.26837 6.62166 7.32091 7.33708 8.09201 8.33637 9.27720 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003835 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.456339 B = 7298.698551 C = 9008.827701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.128 4.128 6 C 0.510 3.490 7 O -0.586 6.586 8 N -0.710 5.710 9 C 0.162 3.838 10 H 0.063 0.937 11 C -0.122 4.122 12 C -0.107 4.107 13 C -0.114 4.114 14 C -0.104 4.104 15 C -0.088 4.088 16 H 0.074 0.926 17 C 0.162 3.838 18 N -0.740 5.740 19 C -0.246 4.246 20 H 0.071 0.929 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.971 3.029 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.270 1.270 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.409 0.591 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.026 0.974 46 H 0.002 0.998 47 H 0.376 0.624 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.949 3.832 9.727 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.134 4.134 3 C -0.179 4.179 4 C -0.104 4.104 5 C -0.167 4.167 6 C 0.298 3.702 7 O -0.467 6.467 8 N -0.362 5.362 9 C 0.056 3.944 10 H 0.081 0.919 11 C -0.160 4.160 12 C -0.145 4.145 13 C -0.152 4.152 14 C -0.142 4.142 15 C -0.107 4.107 16 H 0.092 0.908 17 C 0.036 3.964 18 N -0.384 5.384 19 C -0.378 4.378 20 H 0.089 0.911 21 C -0.264 4.264 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.195 1.195 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.020 0.980 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.693 3.589 10.499 22.604 hybrid contribution 1.215 0.333 -0.807 1.497 sum -18.478 3.921 9.691 21.231 Atomic orbital electron populations 1.23848 0.94995 1.02561 1.01580 1.21796 0.95724 0.95451 1.00434 1.20916 1.00093 0.94187 1.02728 1.20345 1.00057 0.94701 0.95326 1.21651 1.01857 0.93718 0.99505 1.21225 0.78685 0.87277 0.83009 1.90667 1.58770 1.64375 1.32850 1.46101 1.56819 1.23813 1.09475 1.20734 0.92530 0.84110 0.97023 0.91885 1.21836 0.97853 0.97559 0.98765 1.21443 0.97399 1.02549 0.93073 1.21536 0.97282 0.97888 0.98468 1.21447 0.97022 0.99306 0.96404 1.21449 0.95356 0.98822 0.95121 0.90785 1.20737 0.90264 0.96376 0.89060 1.42538 1.35352 1.29339 1.31132 1.19593 1.06885 1.03283 1.08073 0.91111 1.25517 1.02282 1.00457 0.98190 1.69802 1.41190 1.32425 1.18335 0.85178 0.79271 0.79024 0.76517 1.21661 1.21962 1.19456 0.88262 0.87296 0.90731 0.90988 0.92221 0.91650 0.92161 0.87546 0.86661 0.75360 0.90770 0.92255 0.90744 0.91511 0.92199 0.90825 0.93375 0.91481 0.95623 0.98045 0.79144 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 13.89 67.78 0.94 -1.75 16 2 C -0.13 -2.13 5.31 -16.49 -0.09 -2.22 16 3 C -0.12 -1.70 10.03 71.24 0.71 -0.99 16 4 C -0.07 -1.28 4.67 29.85 0.14 -1.14 16 5 C -0.13 -2.27 5.68 29.85 0.17 -2.10 16 6 C 0.51 12.80 7.79 87.66 0.68 13.48 16 7 O -0.59 -19.42 15.64 -3.03 -0.05 -19.47 16 8 N -0.71 -16.73 3.62 -442.54 -1.60 -18.33 16 9 C 0.16 4.36 2.23 44.99 0.10 4.46 16 10 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 11 C -0.12 -2.77 5.60 30.60 0.17 -2.60 16 12 C -0.11 -2.04 5.77 30.60 0.18 -1.86 16 13 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 14 C -0.10 -2.87 4.90 30.59 0.15 -2.72 16 15 C -0.09 -2.72 2.02 -10.79 -0.02 -2.74 16 16 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 17 C 0.16 6.44 5.42 86.38 0.47 6.91 16 18 N -0.74 -37.28 5.33 -343.45 -1.83 -39.11 16 19 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 23 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H 0.10 1.32 7.99 -2.91 -0.02 1.30 16 28 H 0.11 1.24 8.04 -2.91 -0.02 1.21 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.07 0.84 8.06 -2.38 -0.02 0.82 16 31 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.06 1.37 7.94 -2.39 -0.02 1.35 16 33 H 0.06 1.36 8.06 -2.39 -0.02 1.34 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 8.29 6.67 -92.71 -0.62 7.67 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.07 1.19 7.60 -2.39 -0.02 1.17 16 41 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.05 1.64 7.18 -2.38 -0.02 1.63 16 44 H 0.07 1.66 6.51 -2.39 -0.02 1.65 16 45 H 0.03 0.99 7.61 -2.39 -0.02 0.97 16 46 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.38 19.95 6.85 -92.71 -0.64 19.31 16 48 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -67.83 378.97 3.59 -64.23 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.33 Total: 35.20 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.09 Total: -12.19 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -3.15 Total: -115.87 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -67.83 3.59 -64.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345883.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.355 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds